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The map label for this gene is ybfL [H]

Identifier: 119945718

GI number: 119945718

Start: 2488481

End: 2489173

Strand: Reverse

Name: ybfL [H]

Synonym: Ping_2042

Alternate gene names: 119945718

Gene position: 2489173-2488481 (Counterclockwise)

Preceding gene: 119945719

Following gene: 119945717

Centisome position: 54.59

GC content: 36.65

Gene sequence:

>693_bases
ATGTCCCAAATAACCTTGATAAACCAGCTCTCAATCATCCGTGATACCCGACAACCGAGGAAAGTGCATCACAATTTAGT
TGATGTTTTATTTTTGGCAATTACAGCCGTCATATCGGGCTGTGAGGGTTGGGAAGAAATACAAGATTTCGGCAACGATA
AGTTAGATTGGCTGAGAAAGTATTTACCATTTTCAGGCGGAATACCTACGGACGACACAATTTCTCGTATTTTTCAGTTG
ATTGACCCAAAAGAATTTCAAAAGTGCTTTGCTACTTGGATGAAAAGTTGCTGTGAAATGAGTCATGGAGATGTCATTGT
TATTGATGGAAAAACATTAAGAGGTTCATTTAATAAGAAAGATAAATCAGATACTATTCATATGGTTAGTGCTTTTGCAG
CCGCTAATTCGGTTGTGTTAGGGCAAGTTAAGACAAATGCTAAGTCTAATGAAATTACAGCGATTCCTAAGTTATTAGAT
TTATTGGATGTACGTGGATGCCTCGTAACTATTGATGCAATGGGATGCCAAACTAAAATAGCTAAAAAAATCGTAGATAA
AGGTGGTGATTATCTTTTTCCTGTTAAAGGTAACCAAGAACGATTACAAACAGCATTAGACGGTATATTTTCAATTGGCC
GATTAGAGTTACCAGAAACAGAAGTCTATACGACTAAAAAAAAGGCAGGGTAA

Upstream 100 bases:

>100_bases
GTTAGCTGTATCTATATATCTGAATTTACAAAAGGATCACGTTGTAGATCAGTTTTGGTTATGATCATATACTTCTTTTT
ATCTTAAATAGAAACTAGAT

Downstream 100 bases:

>100_bases
GGTGCTTCATGATTTCGCCCTGGCCCTTCCCACTGCTACAAGCTGCTCTCATTTCATTCAAAAGTTGTAAAATTAGATGT
TAGATAGAACAATCATTAAA

Product: transposase, IS4 family protein

Products: NA

Alternate protein names: H repeat-associated protein in rhsC-phrB intergenic region; ORF-H2 [H]

Number of amino acids: Translated: 230; Mature: 229

Protein sequence:

>230_residues
MSQITLINQLSIIRDTRQPRKVHHNLVDVLFLAITAVISGCEGWEEIQDFGNDKLDWLRKYLPFSGGIPTDDTISRIFQL
IDPKEFQKCFATWMKSCCEMSHGDVIVIDGKTLRGSFNKKDKSDTIHMVSAFAAANSVVLGQVKTNAKSNEITAIPKLLD
LLDVRGCLVTIDAMGCQTKIAKKIVDKGGDYLFPVKGNQERLQTALDGIFSIGRLELPETEVYTTKKKAG

Sequences:

>Translated_230_residues
MSQITLINQLSIIRDTRQPRKVHHNLVDVLFLAITAVISGCEGWEEIQDFGNDKLDWLRKYLPFSGGIPTDDTISRIFQL
IDPKEFQKCFATWMKSCCEMSHGDVIVIDGKTLRGSFNKKDKSDTIHMVSAFAAANSVVLGQVKTNAKSNEITAIPKLLD
LLDVRGCLVTIDAMGCQTKIAKKIVDKGGDYLFPVKGNQERLQTALDGIFSIGRLELPETEVYTTKKKAG
>Mature_229_residues
SQITLINQLSIIRDTRQPRKVHHNLVDVLFLAITAVISGCEGWEEIQDFGNDKLDWLRKYLPFSGGIPTDDTISRIFQLI
DPKEFQKCFATWMKSCCEMSHGDVIVIDGKTLRGSFNKKDKSDTIHMVSAFAAANSVVLGQVKTNAKSNEITAIPKLLDL
LDVRGCLVTIDAMGCQTKIAKKIVDKGGDYLFPVKGNQERLQTALDGIFSIGRLELPETEVYTTKKKAG

Specific function: Unknown

COG id: COG5433

COG function: function code L; Transposase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the transposase 11 family [H]

Homologues:

Organism=Escherichia coli, GI1789896, Length=224, Percent_Identity=51.3392857142857, Blast_Score=243, Evalue=7e-66,
Organism=Escherichia coli, GI1787733, Length=224, Percent_Identity=50.4464285714286, Blast_Score=240, Evalue=7e-65,
Organism=Escherichia coli, GI1786924, Length=224, Percent_Identity=48.6607142857143, Blast_Score=223, Evalue=7e-60,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002559 [H]

Pfam domain/function: PF01609 Transposase_11 [H]

EC number: NA

Molecular weight: Translated: 25579; Mature: 25448

Theoretical pI: Translated: 8.12; Mature: 8.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQITLINQLSIIRDTRQPRKVHHNLVDVLFLAITAVISGCEGWEEIQDFGNDKLDWLRK
CCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCHHHHHHH
YLPFSGGIPTDDTISRIFQLIDPKEFQKCFATWMKSCCEMSHGDVIVIDGKTLRGSFNKK
HCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCEEEECCCEECCCCCCC
DKSDTIHMVSAFAAANSVVLGQVKTNAKSNEITAIPKLLDLLDVRGCLVTIDAMGCQTKI
CCCHHHHHHHHHHHHCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCHHHHH
AKKIVDKGGDYLFPVKGNQERLQTALDGIFSIGRLELPETEVYTTKKKAG
HHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCCCHHCCCCCCCC
>Mature Secondary Structure 
SQITLINQLSIIRDTRQPRKVHHNLVDVLFLAITAVISGCEGWEEIQDFGNDKLDWLRK
CCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCHHHHHHH
YLPFSGGIPTDDTISRIFQLIDPKEFQKCFATWMKSCCEMSHGDVIVIDGKTLRGSFNKK
HCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCEEEECCCEECCCCCCC
DKSDTIHMVSAFAAANSVVLGQVKTNAKSNEITAIPKLLDLLDVRGCLVTIDAMGCQTKI
CCCHHHHHHHHHHHHCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCHHHHH
AKKIVDKGGDYLFPVKGNQERLQTALDGIFSIGRLELPETEVYTTKKKAG
HHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCCCHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8387990; 8905232; 9278503 [H]