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The map label for this gene is tdcF [C]

Identifier: 119945709

GI number: 119945709

Start: 2475225

End: 2475605

Strand: Direct

Name: tdcF [C]

Synonym: Ping_2029

Alternate gene names: 119945709

Gene position: 2475225-2475605 (Clockwise)

Preceding gene: 119945708

Following gene: 119945710

Centisome position: 54.29

GC content: 37.27

Gene sequence:

>381_bases
ATGAAAACTATCATCAACACAGCAAAAGCACCTGCAGCAATTGGCCCTTACTCTCAAGCAAATACATTTGGTGATCTTGT
ATTTACATCAGGTCAGTTAGGCTTGAATGCAGATACAATGGTATTGGTAGAAGGTGGCATCAAAGAGCAATCTTATCAAG
TACTTAAAAATCTTGTTATTGTGCTTGAAGCTGCTGGTGCATCAGCTGATACCGTTCTTAAAACAACCTGTTTTATTGCG
GATATGAATGACTTTGCTGCATTTAATGAAGTTTATGCTGAATTTTTTGCTAAAAATGCGCCAGCTCGCTTATGTGTAGA
AGCTGCTCGTTTACCAAAAGATGCATTAATTGAAGTTGAAGCTATTGCCTATAAAGCATAA

Upstream 100 bases:

>100_bases
TGAATTAAAAGAAGCAACACAACTTGTTGCTCTTGAGCTCAAGATATCAAAACATGCAATTTATAAATACATTCGTGAAT
TTAAATCCTAGGAGCATATT

Downstream 100 bases:

>100_bases
TTAATAAATTTCATACTGAATTATGTCAGCATAAAAAGAGGTTATATTGATAACCTCTTTAATTATCTATTTTATTTTTA
CTTTTTTACTTAGGTAACCT

Product: putative endoribonuclease L-PSP

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 126; Mature: 126

Protein sequence:

>126_residues
MKTIINTAKAPAAIGPYSQANTFGDLVFTSGQLGLNADTMVLVEGGIKEQSYQVLKNLVIVLEAAGASADTVLKTTCFIA
DMNDFAAFNEVYAEFFAKNAPARLCVEAARLPKDALIEVEAIAYKA

Sequences:

>Translated_126_residues
MKTIINTAKAPAAIGPYSQANTFGDLVFTSGQLGLNADTMVLVEGGIKEQSYQVLKNLVIVLEAAGASADTVLKTTCFIA
DMNDFAAFNEVYAEFFAKNAPARLCVEAARLPKDALIEVEAIAYKA
>Mature_126_residues
MKTIINTAKAPAAIGPYSQANTFGDLVFTSGQLGLNADTMVLVEGGIKEQSYQVLKNLVIVLEAAGASADTVLKTTCFIA
DMNDFAAFNEVYAEFFAKNAPARLCVEAARLPKDALIEVEAIAYKA

Specific function: Anaerobic degradation of L-threonine to propionate. [C]

COG id: COG0251

COG function: function code J; Putative translation initiation inhibitor, yjgF family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family [H]

Homologues:

Organism=Homo sapiens, GI5032215, Length=126, Percent_Identity=45.2380952380952, Blast_Score=121, Evalue=1e-28,
Organism=Escherichia coli, GI87082213, Length=129, Percent_Identity=44.9612403100775, Blast_Score=114, Evalue=2e-27,
Organism=Escherichia coli, GI87082396, Length=128, Percent_Identity=46.09375, Blast_Score=110, Evalue=2e-26,
Organism=Escherichia coli, GI1787245, Length=125, Percent_Identity=34.4, Blast_Score=82, Evalue=8e-18,
Organism=Caenorhabditis elegans, GI71982075, Length=122, Percent_Identity=50, Blast_Score=117, Evalue=1e-27,
Organism=Caenorhabditis elegans, GI71982068, Length=122, Percent_Identity=50, Blast_Score=117, Evalue=1e-27,
Organism=Caenorhabditis elegans, GI25148896, Length=122, Percent_Identity=50, Blast_Score=117, Evalue=1e-27,
Organism=Saccharomyces cerevisiae, GI6322138, Length=121, Percent_Identity=40.495867768595, Blast_Score=93, Evalue=1e-20,
Organism=Saccharomyces cerevisiae, GI6320899, Length=100, Percent_Identity=47, Blast_Score=91, Evalue=4e-20,
Organism=Drosophila melanogaster, GI19921376, Length=123, Percent_Identity=48.780487804878, Blast_Score=120, Evalue=2e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR006056
- InterPro:   IPR019897 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 13395; Mature: 13395

Theoretical pI: Translated: 4.44; Mature: 4.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTIINTAKAPAAIGPYSQANTFGDLVFTSGQLGLNADTMVLVEGGIKEQSYQVLKNLVI
CCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCEEEEEECCCCHHHHHHHHHHHH
VLEAAGASADTVLKTTCFIADMNDFAAFNEVYAEFFAKNAPARLCVEAARLPKDALIEVE
HHCCCCCCCCHHHHHHHEEECCHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHEEEEH
AIAYKA
EEEECC
>Mature Secondary Structure
MKTIINTAKAPAAIGPYSQANTFGDLVFTSGQLGLNADTMVLVEGGIKEQSYQVLKNLVI
CCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCEEEEEECCCCHHHHHHHHHHHH
VLEAAGASADTVLKTTCFIADMNDFAAFNEVYAEFFAKNAPARLCVEAARLPKDALIEVE
HHCCCCCCCCHHHHHHHEEECCHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHEEEEH
AIAYKA
EEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9679194 [H]