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The map label for this gene is ypdF [C]

Identifier: 119945706

GI number: 119945706

Start: 2471284

End: 2472450

Strand: Reverse

Name: ypdF [C]

Synonym: Ping_2026

Alternate gene names: 119945706

Gene position: 2472450-2471284 (Counterclockwise)

Preceding gene: 119945707

Following gene: 119945703

Centisome position: 54.23

GC content: 41.05

Gene sequence:

>1167_bases
ATGTCTAGTTATCTTGATCGCGGTTTTACATTAGCGGAATTTGAAAATAGAACAGCACGCGCACAGCGAGTGATGCATGA
AATGAAATTGGATGCGATGCTCTTTACAACGGAGCCTAACGTTCGTTATTTTACAGGGTTCCAGACTCAATTTTGGCAAA
GTCCAACGCGCCCTTGGTTTGTGGTCATTCCAGCAGAGGGTAAACCCATTGCAGTTATTCCAGAGATTGGTGCAAGTGGT
ATGGCGGGGACTTGGGTTGATAACATTATTACGTGGGCATCACCTTGTCCTGAAGATGACGGCATTAGCTTATTAGTAAA
TGTCTTAAATGGCTTAGTGAGCAAGTATGGCCGTGTTGGTGTGACAATGGGCATTGAGTCTCATTTACGTATGCCCATTA
ATAATTTTCTAGCATTAAGGAACCGAGTTAAAAAAGAATTTGTAGATACTTCTTTGGCGACTCATGAACTCCGTCAGATT
AAATCACAAGCTGAAATTGAAAAAACACGTGAAATATGTCGCATTACCAATGTTGGCTTTGATAACTTACCTAATTATGC
ACAAGTGGGAATGTCTGAGAGAGAAATTTGCAAGCAATTTCGTATTGATATGTTGCAAGAAGGCGCTGATGAATGCCCAT
ATATCATTAGTGGTTCTGGCGCTGATGGTTATAACAGTATCATTATGGGTCCTACTGATCGTGTCATTGAAAAAGGGGAT
GTGCTGATTATTGATACCGGTGCTGTTCGTGATGGTTATTTTTCTGACTTTGATCGAAATTGGGCATTTGGTTATGCGAG
TGAAGAAACTAAATCGGCATATCGAGCGACATATGAAGCAACAACCAAAGGCTTTGAAGCGGCTAAACCAGGAAACACGA
CATCTGATATTTATAATGCAATGTGGAGTGTATTAGAAGCGAATGGTGCATTAGGTAATGATGTTGGTCGCCTTGGTCAC
GGGTTAGGAATGGAATTAACTGAACGCCCATCAAATACCGCAACAGATAACAGTGTATTAAAACCAGGTATGGTAATGAC
GCTTGAACCTGGAATGGTTTACGCTTCAGGTAAATCAATGGTACATGAAGAGAATATTGTGATCACAGAAGATGGGGCTG
AGTGGCTAAGTAGACGTGCTGAAGCTGAACTTATCATTATAAAGTGA

Upstream 100 bases:

>100_bases
TTAAATCAGATGCATACAATCTATCTTAAAAGATATTTAGCATAATAGTTAATATTAAGTAATTTTGTTGCTTTGAAAAT
ATCTAAGGGGAAGTTTAGTC

Downstream 100 bases:

>100_bases
TTTGAACTTGATTTCCAAGCGTACTGGTTGAAATGTATGTCGCTTTGTAACCTCATAGAAGAATAAAATTAAACAAAGCC
TCAATTATATTTAAATAATT

Product: peptidase M24

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 388; Mature: 387

Protein sequence:

>388_residues
MSSYLDRGFTLAEFENRTARAQRVMHEMKLDAMLFTTEPNVRYFTGFQTQFWQSPTRPWFVVIPAEGKPIAVIPEIGASG
MAGTWVDNIITWASPCPEDDGISLLVNVLNGLVSKYGRVGVTMGIESHLRMPINNFLALRNRVKKEFVDTSLATHELRQI
KSQAEIEKTREICRITNVGFDNLPNYAQVGMSEREICKQFRIDMLQEGADECPYIISGSGADGYNSIIMGPTDRVIEKGD
VLIIDTGAVRDGYFSDFDRNWAFGYASEETKSAYRATYEATTKGFEAAKPGNTTSDIYNAMWSVLEANGALGNDVGRLGH
GLGMELTERPSNTATDNSVLKPGMVMTLEPGMVYASGKSMVHEENIVITEDGAEWLSRRAEAELIIIK

Sequences:

>Translated_388_residues
MSSYLDRGFTLAEFENRTARAQRVMHEMKLDAMLFTTEPNVRYFTGFQTQFWQSPTRPWFVVIPAEGKPIAVIPEIGASG
MAGTWVDNIITWASPCPEDDGISLLVNVLNGLVSKYGRVGVTMGIESHLRMPINNFLALRNRVKKEFVDTSLATHELRQI
KSQAEIEKTREICRITNVGFDNLPNYAQVGMSEREICKQFRIDMLQEGADECPYIISGSGADGYNSIIMGPTDRVIEKGD
VLIIDTGAVRDGYFSDFDRNWAFGYASEETKSAYRATYEATTKGFEAAKPGNTTSDIYNAMWSVLEANGALGNDVGRLGH
GLGMELTERPSNTATDNSVLKPGMVMTLEPGMVYASGKSMVHEENIVITEDGAEWLSRRAEAELIIIK
>Mature_387_residues
SSYLDRGFTLAEFENRTARAQRVMHEMKLDAMLFTTEPNVRYFTGFQTQFWQSPTRPWFVVIPAEGKPIAVIPEIGASGM
AGTWVDNIITWASPCPEDDGISLLVNVLNGLVSKYGRVGVTMGIESHLRMPINNFLALRNRVKKEFVDTSLATHELRQIK
SQAEIEKTREICRITNVGFDNLPNYAQVGMSEREICKQFRIDMLQEGADECPYIISGSGADGYNSIIMGPTDRVIEKGDV
LIIDTGAVRDGYFSDFDRNWAFGYASEETKSAYRATYEATTKGFEAAKPGNTTSDIYNAMWSVLEANGALGNDVGRLGHG
LGMELTERPSNTATDNSVLKPGMVMTLEPGMVYASGKSMVHEENIVITEDGAEWLSRRAEAELIIIK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M24B family [H]

Homologues:

Organism=Homo sapiens, GI11559925, Length=261, Percent_Identity=24.1379310344828, Blast_Score=75, Evalue=1e-13,
Organism=Escherichia coli, GI1788728, Length=229, Percent_Identity=33.1877729257642, Blast_Score=109, Evalue=3e-25,
Organism=Escherichia coli, GI1786364, Length=260, Percent_Identity=27.6923076923077, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1789275, Length=262, Percent_Identity=27.0992366412214, Blast_Score=70, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000587
- InterPro:   IPR000994
- InterPro:   IPR001131 [H]

Pfam domain/function: PF01321 Creatinase_N; PF00557 Peptidase_M24 [H]

EC number: 3.4.-.- [C]

Molecular weight: Translated: 43061; Mature: 42930

Theoretical pI: Translated: 4.71; Mature: 4.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSYLDRGFTLAEFENRTARAQRVMHEMKLDAMLFTTEPNVRYFTGFQTQFWQSPTRPWF
CCCHHHCCCCHHHHHHHHHHHHHHHHHHHHCEEEEECCCCEEEEECCCHHHHCCCCCCEE
VVIPAEGKPIAVIPEIGASGMAGTWVDNIITWASPCPEDDGISLLVNVLNGLVSKYGRVG
EEEECCCCCEEEECCCCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCE
VTMGIESHLRMPINNFLALRNRVKKEFVDTSLATHELRQIKSQAEIEKTREICRITNVGF
EEECCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
DNLPNYAQVGMSEREICKQFRIDMLQEGADECPYIISGSGADGYNSIIMGPTDRVIEKGD
CCCCCHHHHCCCHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCEEECCCHHHHCCCC
VLIIDTGAVRDGYFSDFDRNWAFGYASEETKSAYRATYEATTKGFEAAKPGNTTSDIYNA
EEEEECCCCCCCCCCCCCCCCEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHH
MWSVLEANGALGNDVGRLGHGLGMELTERPSNTATDNSVLKPGMVMTLEPGMVYASGKSM
HHHHHHCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCEEEECCCCE
VHEENIVITEDGAEWLSRRAEAELIIIK
EEECCEEEECCCHHHHHHCCCCCEEEEC
>Mature Secondary Structure 
SSYLDRGFTLAEFENRTARAQRVMHEMKLDAMLFTTEPNVRYFTGFQTQFWQSPTRPWF
CCHHHCCCCHHHHHHHHHHHHHHHHHHHHCEEEEECCCCEEEEECCCHHHHCCCCCCEE
VVIPAEGKPIAVIPEIGASGMAGTWVDNIITWASPCPEDDGISLLVNVLNGLVSKYGRVG
EEEECCCCCEEEECCCCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCE
VTMGIESHLRMPINNFLALRNRVKKEFVDTSLATHELRQIKSQAEIEKTREICRITNVGF
EEECCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
DNLPNYAQVGMSEREICKQFRIDMLQEGADECPYIISGSGADGYNSIIMGPTDRVIEKGD
CCCCCHHHHCCCHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCEEECCCHHHHCCCC
VLIIDTGAVRDGYFSDFDRNWAFGYASEETKSAYRATYEATTKGFEAAKPGNTTSDIYNA
EEEEECCCCCCCCCCCCCCCCEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHH
MWSVLEANGALGNDVGRLGHGLGMELTERPSNTATDNSVLKPGMVMTLEPGMVYASGKSM
HHHHHHCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCEEEECCCCE
VHEENIVITEDGAEWLSRRAEAELIIIK
EEECCEEEECCCHHHHHHCCCCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11418146 [H]