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The map label for this gene is yddU [C]

Identifier: 119945705

GI number: 119945705

Start: 2469736

End: 2470908

Strand: Direct

Name: yddU [C]

Synonym: Ping_2025

Alternate gene names: 119945705

Gene position: 2469736-2470908 (Clockwise)

Preceding gene: 119945704

Following gene: 119945708

Centisome position: 54.17

GC content: 42.03

Gene sequence:

>1173_bases
ATGATGGTTATTAAAAAACTCTTAGTGGTTGATGACGAAATTGACTTTGCAAAATTTGTTAAGGATGTCGCTGAAGACTT
GGATTTCGAGGTTTTATTAACCGATAATCCTGTGGAGTTCAGTAGCCTGTATTGCAACAACATTGACATTGTTGTTCTTG
ATTTATTTATGCCCGGAACCGATGGTATTGAACTGCTCAGGTACTTAGCAGATAACAATAGCCACGCATCTGTTATTTTT
ATGAGTGGAAGAAACAGCAGTGTGCTTCATTCAGCAAAGGAGTTAGCTTCCGAACAAGGCATCAGCGTATTAGGCACGCT
TCAAAAGCCGTTTAGGGCAAAGGAATTAGAGGATGTTTTAAATAAATATATTAAATATTCTCCCATATTTGCTGTTAATA
ACGACTTAGCTTCCGTGGAAGAGCTTGCTCAGGCCATAAAAGAGAAGGCATTATTTCTTGTCTACCAACCCCAGGTCACA
ATAAGTGACAGAGAGGTAGTTGGTGTTGAGGCGCTCGTTCGCTGGAAACATCCGACCAAAGGAATGATTCCTCCAGACTA
TTTTATTCCAATGGCAGAAGAAAATGGCTTAATTGCAGCTATTACGATGTTTACTACTAAGACAGCTATTCGCCAGCAAG
GAATATGGAGAACCCAAGGCCGCAATATGCGAATGTCAATCAATATGTCTCCCAAAATCCTTGATGATCTGGACCTGCCG
AGTAAAATTGAAGCTTGCGTTAAAGCGCTGGGTGCTGATATTTCAAAACTGGTGATTGAGGTAACAGAGACAGCTCTGAC
AACTAACCTTGCTCTATACATGGATATATTGGCACGTTTACGCATGAAAGGCTTCGGGATCTCTATCGATGACTTCGGAA
CCGGATACTCGTCCCTGCAACAACTCATTCGCGCCCCTTTTACTGAACTGAAAATTGATCGGGCTTTTATTCGAAACATA
AAGACAGACAAGGAATCCTATACGATCAGTAAAATATCTATCATGCTTGCACATGAGTTTGGGATGAAAGCCGTTGCTGA
GGGAATTGAAACCGAGGCCGAGTGGAATATATTAAAACAACTCGGCTGTGACGAAGGCCAAGGATATTGGATCGGCAGAC
CTATGCCCCCTGAGGAAATCGAGTCGTGGATTAAAAGTTGGTCAGCTGACTGA

Upstream 100 bases:

>100_bases
TGACAAATATGCACAATGGGAAAAGAATATTATAACTAAACCTTATCGGCGTGACCAGCTCGCTAAACGAATCCGAGCGA
CCTTGGACGGAAGTAATTAA

Downstream 100 bases:

>100_bases
GCGCACCAAAGAACAGCAATAAAAGGCTCGAAAGCCAATCTTTTTCAGGTAAATTTCAGGTCTTTTTAAGCAACACCTTC
GTCCTGCCCTCACACTGATA

Product: cyclic-di-GMP regulatory protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 390; Mature: 390

Protein sequence:

>390_residues
MMVIKKLLVVDDEIDFAKFVKDVAEDLDFEVLLTDNPVEFSSLYCNNIDIVVLDLFMPGTDGIELLRYLADNNSHASVIF
MSGRNSSVLHSAKELASEQGISVLGTLQKPFRAKELEDVLNKYIKYSPIFAVNNDLASVEELAQAIKEKALFLVYQPQVT
ISDREVVGVEALVRWKHPTKGMIPPDYFIPMAEENGLIAAITMFTTKTAIRQQGIWRTQGRNMRMSINMSPKILDDLDLP
SKIEACVKALGADISKLVIEVTETALTTNLALYMDILARLRMKGFGISIDDFGTGYSSLQQLIRAPFTELKIDRAFIRNI
KTDKESYTISKISIMLAHEFGMKAVAEGIETEAEWNILKQLGCDEGQGYWIGRPMPPEEIESWIKSWSAD

Sequences:

>Translated_390_residues
MMVIKKLLVVDDEIDFAKFVKDVAEDLDFEVLLTDNPVEFSSLYCNNIDIVVLDLFMPGTDGIELLRYLADNNSHASVIF
MSGRNSSVLHSAKELASEQGISVLGTLQKPFRAKELEDVLNKYIKYSPIFAVNNDLASVEELAQAIKEKALFLVYQPQVT
ISDREVVGVEALVRWKHPTKGMIPPDYFIPMAEENGLIAAITMFTTKTAIRQQGIWRTQGRNMRMSINMSPKILDDLDLP
SKIEACVKALGADISKLVIEVTETALTTNLALYMDILARLRMKGFGISIDDFGTGYSSLQQLIRAPFTELKIDRAFIRNI
KTDKESYTISKISIMLAHEFGMKAVAEGIETEAEWNILKQLGCDEGQGYWIGRPMPPEEIESWIKSWSAD
>Mature_390_residues
MMVIKKLLVVDDEIDFAKFVKDVAEDLDFEVLLTDNPVEFSSLYCNNIDIVVLDLFMPGTDGIELLRYLADNNSHASVIF
MSGRNSSVLHSAKELASEQGISVLGTLQKPFRAKELEDVLNKYIKYSPIFAVNNDLASVEELAQAIKEKALFLVYQPQVT
ISDREVVGVEALVRWKHPTKGMIPPDYFIPMAEENGLIAAITMFTTKTAIRQQGIWRTQGRNMRMSINMSPKILDDLDLP
SKIEACVKALGADISKLVIEVTETALTTNLALYMDILARLRMKGFGISIDDFGTGYSSLQQLIRAPFTELKIDRAFIRNI
KTDKESYTISKISIMLAHEFGMKAVAEGIETEAEWNILKQLGCDEGQGYWIGRPMPPEEIESWIKSWSAD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI87081921, Length=246, Percent_Identity=36.5853658536585, Blast_Score=177, Evalue=9e-46,
Organism=Escherichia coli, GI1787541, Length=246, Percent_Identity=34.1463414634146, Blast_Score=168, Evalue=5e-43,
Organism=Escherichia coli, GI1790496, Length=257, Percent_Identity=33.0739299610895, Blast_Score=147, Evalue=1e-36,
Organism=Escherichia coli, GI1788502, Length=247, Percent_Identity=34.0080971659919, Blast_Score=143, Evalue=2e-35,
Organism=Escherichia coli, GI87081743, Length=244, Percent_Identity=30.7377049180328, Blast_Score=129, Evalue=3e-31,
Organism=Escherichia coli, GI1787055, Length=269, Percent_Identity=33.457249070632, Blast_Score=125, Evalue=7e-30,
Organism=Escherichia coli, GI87081980, Length=252, Percent_Identity=31.7460317460317, Blast_Score=120, Evalue=2e-28,
Organism=Escherichia coli, GI1788849, Length=245, Percent_Identity=33.469387755102, Blast_Score=119, Evalue=4e-28,
Organism=Escherichia coli, GI1786507, Length=253, Percent_Identity=30.4347826086957, Blast_Score=115, Evalue=5e-27,
Organism=Escherichia coli, GI87081845, Length=248, Percent_Identity=33.8709677419355, Blast_Score=115, Evalue=6e-27,
Organism=Escherichia coli, GI226510982, Length=254, Percent_Identity=29.1338582677165, Blast_Score=107, Evalue=2e-24,
Organism=Escherichia coli, GI87082096, Length=233, Percent_Identity=30.0429184549356, Blast_Score=96, Evalue=4e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330
- InterPro:   IPR000014
- InterPro:   IPR013767 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT; PF00989 PAS [H]

EC number: NA

Molecular weight: Translated: 43789; Mature: 43789

Theoretical pI: Translated: 4.63; Mature: 4.63

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50883 EAL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMVIKKLLVVDDEIDFAKFVKDVAEDLDFEVLLTDNPVEFSSLYCNNIDIVVLDLFMPGT
CHHHHHHHHHCCCCCHHHHHHHHHHCCCEEEEEECCCCCHHHEEECCCCEEEEEEECCCC
DGIELLRYLADNNSHASVIFMSGRNSSVLHSAKELASEQGISVLGTLQKPFRAKELEDVL
CHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHH
NKYIKYSPIFAVNNDLASVEELAQAIKEKALFLVYQPQVTISDREVVGVEALVRWKHPTK
HHHHHCCCEEEECCCHHHHHHHHHHHHHCEEEEEECCCEEECCCHHHHHHHHHEECCCCC
GMIPPDYFIPMAEENGLIAAITMFTTKTAIRQQGIWRTQGRNMRMSINMSPKILDDLDLP
CCCCCCCEEEECCCCCEEEEEEHHHHHHHHHHCCCEEECCCCEEEEECCCCCHHCCCCCC
SKIEACVKALGADISKLVIEVTETALTTNLALYMDILARLRMKGFGISIDDFGTGYSSLQ
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCCCHHHHH
QLIRAPFTELKIDRAFIRNIKTDKESYTISKISIMLAHEFGMKAVAEGIETEAEWNILKQ
HHHHCCHHHHHHHHHHHHHCCCCCCCEEHHHHEEEHHHHHHHHHHHHHCCCHHHHHHHHH
LGCDEGQGYWIGRPMPPEEIESWIKSWSAD
CCCCCCCCEECCCCCCHHHHHHHHHHCCCC
>Mature Secondary Structure
MMVIKKLLVVDDEIDFAKFVKDVAEDLDFEVLLTDNPVEFSSLYCNNIDIVVLDLFMPGT
CHHHHHHHHHCCCCCHHHHHHHHHHCCCEEEEEECCCCCHHHEEECCCCEEEEEEECCCC
DGIELLRYLADNNSHASVIFMSGRNSSVLHSAKELASEQGISVLGTLQKPFRAKELEDVL
CHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHH
NKYIKYSPIFAVNNDLASVEELAQAIKEKALFLVYQPQVTISDREVVGVEALVRWKHPTK
HHHHHCCCEEEECCCHHHHHHHHHHHHHCEEEEEECCCEEECCCHHHHHHHHHEECCCCC
GMIPPDYFIPMAEENGLIAAITMFTTKTAIRQQGIWRTQGRNMRMSINMSPKILDDLDLP
CCCCCCCEEEECCCCCEEEEEEHHHHHHHHHHCCCEEECCCCEEEEECCCCCHHCCCCCC
SKIEACVKALGADISKLVIEVTETALTTNLALYMDILARLRMKGFGISIDDFGTGYSSLQ
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCCCHHHHH
QLIRAPFTELKIDRAFIRNIKTDKESYTISKISIMLAHEFGMKAVAEGIETEAEWNILKQ
HHHHCCHHHHHHHHHHHHHCCCCCCCEEHHHHEEEHHHHHHHHHHHHHCCCHHHHHHHHH
LGCDEGQGYWIGRPMPPEEIESWIKSWSAD
CCCCCCCCEECCCCCCHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11259647 [H]