| Definition | Psychromonas ingrahamii 37, complete genome. |
|---|---|
| Accession | NC_008709 |
| Length | 4,559,598 |
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The map label for this gene is hsdR [H]
Identifier: 119945590
GI number: 119945590
Start: 2302943
End: 2305285
Strand: Direct
Name: hsdR [H]
Synonym: Ping_1895
Alternate gene names: 119945590
Gene position: 2302943-2305285 (Clockwise)
Preceding gene: 119945588
Following gene: 119945591
Centisome position: 50.51
GC content: 42.98
Gene sequence:
>2343_bases ATGCGCCAAATTCGTCAAGAGGTAAAACTGCGCGATGGCAAAGTCATTGTGCGCGGTCAAATCGGCATGCGCAAAACCGT AAAATCTGCTGATATTGTGCTTTATCATAAACCCAATATGCCCCTTGCCGTAATTGAAGCCAAAGCCAATAAACATGAAA TAGGCAAAGGCATGCAGCAGGGGCTGGATTATGCCTGCCTGCTGGAAGTGCCCTTTATTTTTGCCTCTAACGGTGACGGT TTTATTTTTCATGACAAAACCAATCCTGCCCAGCTTGAAACTGAAATTAGTTTAGAAGCCTTTCCGACACCGGCACAGTT ATGGGAAAAATATTGTCTTTACCGCGGTTTTACGGAAACGCAATTGCCCTTAATTACTCAGGACTATCATGATGACGGTG ACGGCAAAACACCGCGTTATTACCAGTTGCAGGCAATTAATAAAACCATAGAAGCAGCTTCTCGCGGCCAAAAGCGCATG TTATTAGTAATGGCAACGGGCACCGGCAAAACCTATACCGCCTTTCAGATTATCTGGCGTTTATGGAAATCGCGGCAGAA AAAACGCATTCTCTTTTTAGCTGACAGAAATATACTGGTCGATCAAACCAAAAACAATGATTTTCAACCTTTCGGTCAGG CCCTAACCAAAGTCACTAAACGTACCGTTGATCCCGCCTATGAAATTCATCTGGCGTTATATCAGGCATTAACCGGACCG GAAGAAGATCAAAAAGCCTTTAAGCAGGTTGATCCCGATTTCTTTGATTTGATTATTATTGACGAATGCCACCGCGGCAG CGCAGCCGATGACAGTGCCTGGCGGGAAATTTTAGAATATTTCAGCGGTGCGATGCAGGTCGGGTTAACCGCGACGCCTA AAGAAACCGAGGCAGTTTCCAATATCGACTACTTCGGCGAGCCCGTTTACACCTACTCATTAAAAGAGGGGATAGAAGAT GGTTTTCTCGCGTCCTATAAAGTAGTACGGGTAGATATTAATGTCGATCTGCAGGGCTGGCGGCCAACCAAAGGGCAAGT AGATAAAAACCATGAGCTGATTGAAGATCGCATTTATAACCAGAAAGACTTTGATCGTACTTTAGTCATAGATGAACGCA CTCAGCTGGTTGCAGAAACCATTACCGCTTACCTGAAACGTACCGATCCTATGGCGAAAACCATTATCTTCTGCAACGAC ATTAATCATGCCGAGCGTATGCGCCGTGCCTTGGTTAATTTAAACCCCGAGCAGGTCGCTAAAAACGAAAAATATGTAAT GAAAATTACCGGCGATGATGAAATCGGTAAAGCCCAGCTGGATAACTTTATTAATCCTAAAAAAGCTTATCCGGTCATTG CCACGACTTCCGAGCTGATGAGCACCGGCGTTGATGCCAAAACCTGCAAATTAATAGTGCTTGATCAGAACATTCAATCC ATGACCAAATTTAAACAAATTATCGGGCGCGGCACCCGCATTGATGATCGTTATAACAAACTGTGGTTTACCATTTTAGA TTTTAAAAAAGCCACCGAACTCTTTGCCGATGAAAACTTTGATGGTGAGCCGGTGCAGGTATTGCAGCGCACACCCGAAG ATATAAATACGGGTGAAGGGGAGCTGGAAGAGCAACACGATGAAAATGAAAATACTGTTTCAGAAAATCTGCCTTCAGAT TATGATGTGGGAAACACCGATCCTAACAACGATGATAATAGTGACTGGGGTGAAATAGAAAGTGGTGAAATAGGTAATGA TGATAAAGAGAAACGTTTTATTAAATTCCATGTATCAGGTGTCACGGTTAAAAAAATGGCTGAACGTGTGCAGTATTACG ACAGCGATGGCAAATTAGTCACCGAATCCTTTAAAGATTACACCCGCAAAACCATGTCCTCGCAATTCAGCTCATTAGAT GAATTTGTTAAACGCTGGAATGAAGCGGATCGTAAAAAAACCGTAATCGATGAACTTGAACAGGCAGGGATTATTTGGGA AGCCTTAATTCAGGAAGTGGGTCTCGACCTTGATCCCTTTGATATGATCTGCCACGTGGTTTATGACCAGCCAGCCTTAA CGCGCAAAGAGCGGGCAAACAAAGTTAAAAAACATAACTATTTTACTCAATATTCTGAGACAGCACAGACAGTATTGAAT AATCTTCTCACCAAATATGCAGACGTTGGTGTGCAGGAAATTGAGAGTATGCAGGTTTTAAAAGTACAGCCCTTTACTCA GATTGGCAGCCTCAGCGAAATTATCAAAAAAGGTTTTGGTGGTAAACCGCAATATGAACAGGCCATTACGGAATTAGAAG AAATATTATACCGTTCTGCATAA
Upstream 100 bases:
>100_bases TTTTATACACAATAATACAATAAAAAAAGCAAAACTCTCTGAAACAGATATCATCAGCAAATTTATTCTGCCCAGCATTA AAAAGGCGGGCTGGGACGAT
Downstream 100 bases:
>100_bases TTGCTCAGTATGGTTTTTATTTCCCCGTCATTCCCGAGTTGTCCTATCGGGAAGTGAATTGAACGGCAGTTCAGTGTCAT GAACGGGCTAAGCTCTGCGT
Product: EcoEI R domain-containing protein
Products: NA
Alternate protein names: R.EcoAI [H]
Number of amino acids: Translated: 780; Mature: 780
Protein sequence:
>780_residues MRQIRQEVKLRDGKVIVRGQIGMRKTVKSADIVLYHKPNMPLAVIEAKANKHEIGKGMQQGLDYACLLEVPFIFASNGDG FIFHDKTNPAQLETEISLEAFPTPAQLWEKYCLYRGFTETQLPLITQDYHDDGDGKTPRYYQLQAINKTIEAASRGQKRM LLVMATGTGKTYTAFQIIWRLWKSRQKKRILFLADRNILVDQTKNNDFQPFGQALTKVTKRTVDPAYEIHLALYQALTGP EEDQKAFKQVDPDFFDLIIIDECHRGSAADDSAWREILEYFSGAMQVGLTATPKETEAVSNIDYFGEPVYTYSLKEGIED GFLASYKVVRVDINVDLQGWRPTKGQVDKNHELIEDRIYNQKDFDRTLVIDERTQLVAETITAYLKRTDPMAKTIIFCND INHAERMRRALVNLNPEQVAKNEKYVMKITGDDEIGKAQLDNFINPKKAYPVIATTSELMSTGVDAKTCKLIVLDQNIQS MTKFKQIIGRGTRIDDRYNKLWFTILDFKKATELFADENFDGEPVQVLQRTPEDINTGEGELEEQHDENENTVSENLPSD YDVGNTDPNNDDNSDWGEIESGEIGNDDKEKRFIKFHVSGVTVKKMAERVQYYDSDGKLVTESFKDYTRKTMSSQFSSLD EFVKRWNEADRKKTVIDELEQAGIIWEALIQEVGLDLDPFDMICHVVYDQPALTRKERANKVKKHNYFTQYSETAQTVLN NLLTKYADVGVQEIESMQVLKVQPFTQIGSLSEIIKKGFGGKPQYEQAITELEEILYRSA
Sequences:
>Translated_780_residues MRQIRQEVKLRDGKVIVRGQIGMRKTVKSADIVLYHKPNMPLAVIEAKANKHEIGKGMQQGLDYACLLEVPFIFASNGDG FIFHDKTNPAQLETEISLEAFPTPAQLWEKYCLYRGFTETQLPLITQDYHDDGDGKTPRYYQLQAINKTIEAASRGQKRM LLVMATGTGKTYTAFQIIWRLWKSRQKKRILFLADRNILVDQTKNNDFQPFGQALTKVTKRTVDPAYEIHLALYQALTGP EEDQKAFKQVDPDFFDLIIIDECHRGSAADDSAWREILEYFSGAMQVGLTATPKETEAVSNIDYFGEPVYTYSLKEGIED GFLASYKVVRVDINVDLQGWRPTKGQVDKNHELIEDRIYNQKDFDRTLVIDERTQLVAETITAYLKRTDPMAKTIIFCND INHAERMRRALVNLNPEQVAKNEKYVMKITGDDEIGKAQLDNFINPKKAYPVIATTSELMSTGVDAKTCKLIVLDQNIQS MTKFKQIIGRGTRIDDRYNKLWFTILDFKKATELFADENFDGEPVQVLQRTPEDINTGEGELEEQHDENENTVSENLPSD YDVGNTDPNNDDNSDWGEIESGEIGNDDKEKRFIKFHVSGVTVKKMAERVQYYDSDGKLVTESFKDYTRKTMSSQFSSLD EFVKRWNEADRKKTVIDELEQAGIIWEALIQEVGLDLDPFDMICHVVYDQPALTRKERANKVKKHNYFTQYSETAQTVLN NLLTKYADVGVQEIESMQVLKVQPFTQIGSLSEIIKKGFGGKPQYEQAITELEEILYRSA >Mature_780_residues MRQIRQEVKLRDGKVIVRGQIGMRKTVKSADIVLYHKPNMPLAVIEAKANKHEIGKGMQQGLDYACLLEVPFIFASNGDG FIFHDKTNPAQLETEISLEAFPTPAQLWEKYCLYRGFTETQLPLITQDYHDDGDGKTPRYYQLQAINKTIEAASRGQKRM LLVMATGTGKTYTAFQIIWRLWKSRQKKRILFLADRNILVDQTKNNDFQPFGQALTKVTKRTVDPAYEIHLALYQALTGP EEDQKAFKQVDPDFFDLIIIDECHRGSAADDSAWREILEYFSGAMQVGLTATPKETEAVSNIDYFGEPVYTYSLKEGIED GFLASYKVVRVDINVDLQGWRPTKGQVDKNHELIEDRIYNQKDFDRTLVIDERTQLVAETITAYLKRTDPMAKTIIFCND INHAERMRRALVNLNPEQVAKNEKYVMKITGDDEIGKAQLDNFINPKKAYPVIATTSELMSTGVDAKTCKLIVLDQNIQS MTKFKQIIGRGTRIDDRYNKLWFTILDFKKATELFADENFDGEPVQVLQRTPEDINTGEGELEEQHDENENTVSENLPSD YDVGNTDPNNDDNSDWGEIESGEIGNDDKEKRFIKFHVSGVTVKKMAERVQYYDSDGKLVTESFKDYTRKTMSSQFSSLD EFVKRWNEADRKKTVIDELEQAGIIWEALIQEVGLDLDPFDMICHVVYDQPALTRKERANKVKKHNYFTQYSETAQTVLN NLLTKYADVGVQEIESMQVLKVQPFTQIGSLSEIIKKGFGGKPQYEQAITELEEILYRSA
Specific function: The EcoAI enzyme recognizes 5'-GAGN(7)GTCA-3'. Subunit R is required for both nuclease and ATPase activities, but not for modification [H]
COG id: COG4096
COG function: function code V; Type I site-specific restriction-modification system, R (restriction) subunit and related helicases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 helicase C-terminal domain [H]
Homologues:
Organism=Escherichia coli, GI226510991, Length=414, Percent_Identity=31.8840579710145, Blast_Score=160, Evalue=4e-40,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014001 - InterPro: IPR001650 - InterPro: IPR014021 - InterPro: IPR006935 - InterPro: IPR013670 - InterPro: IPR007409 [H]
Pfam domain/function: PF08463 EcoEI_R_C; PF04313 HSDR_N; PF04851 ResIII [H]
EC number: =3.1.21.3 [H]
Molecular weight: Translated: 89323; Mature: 89323
Theoretical pI: Translated: 4.97; Mature: 4.97
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRQIRQEVKLRDGKVIVRGQIGMRKTVKSADIVLYHKPNMPLAVIEAKANKHEIGKGMQQ CCHHHHHHHHCCCCEEEEECCCHHHHHCCCCEEEEECCCCCEEEEECCCCHHHHHHHHHH GLDYACLLEVPFIFASNGDGFIFHDKTNPAQLETEISLEAFPTPAQLWEKYCLYRGFTET CCCEEEEEEECEEEECCCCEEEEECCCCCCCEEEEEEEECCCCHHHHHHHHHHHCCCCCC QLPLITQDYHDDGDGKTPRYYQLQAINKTIEAASRGQKRMLLVMATGTGKTYTAFQIIWR CCCEEECCCCCCCCCCCCCEEEHHHHHHHHHHHHCCCCEEEEEEEECCCCCHHHHHHHHH LWKSRQKKRILFLADRNILVDQTKNNDFQPFGQALTKVTKRTVDPAYEIHLALYQALTGP HHHCCCCCEEEEEECCCEEEECCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCC EEDQKAFKQVDPDFFDLIIIDECHRGSAADDSAWREILEYFSGAMQVGLTATPKETEAVS CHHHHHHHHCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH NIDYFGEPVYTYSLKEGIEDGFLASYKVVRVDINVDLQGWRPTKGQVDKNHELIEDRIYN CCHHCCCCEEEEEHHHCCCCCCEEEEEEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHCC QKDFDRTLVIDERTQLVAETITAYLKRTDPMAKTIIFCNDINHAERMRRALVNLNPEQVA CCCCCCEEEECHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHCCCHHHHC KNEKYVMKITGDDEIGKAQLDNFINPKKAYPVIATTSELMSTGVDAKTCKLIVLDQNIQS CCCCEEEEECCCCCCCHHHHHHCCCCCCCCCEEEEHHHHHHCCCCCHHEEEEEECCCHHH MTKFKQIIGRGTRIDDRYNKLWFTILDFKKATELFADENFDGEPVQVLQRTPEDINTGEG HHHHHHHHCCCCCCCCHHHHHEEEEHHHHHHHHHHCCCCCCCCHHHHHHCCCCCCCCCCC ELEEQHDENENTVSENLPSDYDVGNTDPNNDDNSDWGEIESGEIGNDDKEKRFIKFHVSG CHHHHCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECC VTVKKMAERVQYYDSDGKLVTESFKDYTRKTMSSQFSSLDEFVKRWNEADRKKTVIDELE EEHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QAGIIWEALIQEVGLDLDPFDMICHVVYDQPALTRKERANKVKKHNYFTQYSETAQTVLN HCCHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH NLLTKYADVGVQEIESMQVLKVQPFTQIGSLSEIIKKGFGGKPQYEQAITELEEILYRSA HHHHHHHHCCHHHHCCCCEEEECCHHHHCCHHHHHHHCCCCCCHHHHHHHHHHHHHHCCC >Mature Secondary Structure MRQIRQEVKLRDGKVIVRGQIGMRKTVKSADIVLYHKPNMPLAVIEAKANKHEIGKGMQQ CCHHHHHHHHCCCCEEEEECCCHHHHHCCCCEEEEECCCCCEEEEECCCCHHHHHHHHHH GLDYACLLEVPFIFASNGDGFIFHDKTNPAQLETEISLEAFPTPAQLWEKYCLYRGFTET CCCEEEEEEECEEEECCCCEEEEECCCCCCCEEEEEEEECCCCHHHHHHHHHHHCCCCCC QLPLITQDYHDDGDGKTPRYYQLQAINKTIEAASRGQKRMLLVMATGTGKTYTAFQIIWR CCCEEECCCCCCCCCCCCCEEEHHHHHHHHHHHHCCCCEEEEEEEECCCCCHHHHHHHHH LWKSRQKKRILFLADRNILVDQTKNNDFQPFGQALTKVTKRTVDPAYEIHLALYQALTGP HHHCCCCCEEEEEECCCEEEECCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCC EEDQKAFKQVDPDFFDLIIIDECHRGSAADDSAWREILEYFSGAMQVGLTATPKETEAVS CHHHHHHHHCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH NIDYFGEPVYTYSLKEGIEDGFLASYKVVRVDINVDLQGWRPTKGQVDKNHELIEDRIYN CCHHCCCCEEEEEHHHCCCCCCEEEEEEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHCC QKDFDRTLVIDERTQLVAETITAYLKRTDPMAKTIIFCNDINHAERMRRALVNLNPEQVA CCCCCCEEEECHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHCCCHHHHC KNEKYVMKITGDDEIGKAQLDNFINPKKAYPVIATTSELMSTGVDAKTCKLIVLDQNIQS CCCCEEEEECCCCCCCHHHHHHCCCCCCCCCEEEEHHHHHHCCCCCHHEEEEEECCCHHH MTKFKQIIGRGTRIDDRYNKLWFTILDFKKATELFADENFDGEPVQVLQRTPEDINTGEG HHHHHHHHCCCCCCCCHHHHHEEEEHHHHHHHHHHCCCCCCCCHHHHHHCCCCCCCCCCC ELEEQHDENENTVSENLPSDYDVGNTDPNNDDNSDWGEIESGEIGNDDKEKRFIKFHVSG CHHHHCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECC VTVKKMAERVQYYDSDGKLVTESFKDYTRKTMSSQFSSLDEFVKRWNEADRKKTVIDELE EEHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QAGIIWEALIQEVGLDLDPFDMICHVVYDQPALTRKERANKVKKHNYFTQYSETAQTVLN HCCHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH NLLTKYADVGVQEIESMQVLKVQPFTQIGSLSEIIKKGFGGKPQYEQAITELEEILYRSA HHHHHHHHCCHHHHCCCCEEEECCHHHHCCHHHHHHHCCCCCCHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8412658 [H]