Click here to switch to the map view.

The map label for this gene is rnfH

Identifier: 119945320

GI number: 119945320

Start: 1959488

End: 1959778

Strand: Direct

Name: rnfH

Synonym: Ping_1604

Alternate gene names: 119945320

Gene position: 1959488-1959778 (Clockwise)

Preceding gene: 119945319

Following gene: 119945322

Centisome position: 42.98

GC content: 41.58

Gene sequence:

>291_bases
ATGAATGAGTTGATTGAAATTGAAGTTGTTTATGGACGGCCTGATAAACAAGTTTTACTGTCGTTATCTGTGCCAGTCGG
TAGCACGCTGGAAGACTGTATTAAGTTATCCGGGATAACCACTCATTTTCCAGAAATTATACCCAGTGAAGCCATGGTTG
GTATTTTCAGCCGAGCAGACAAATTATCCAGCATTGTTAAAGCGGGGGATCGTATCGAGATTTATCGTCCGCTAACAGCA
GATCCTAAAGAGATGCGCAAATTACGCGCCGCTAAAATGAGTAAAAAATAG

Upstream 100 bases:

>100_bases
AACTTGCATTTGGTCGGATTTTTAATGAGTTAGTGGGTTCAATGGTGAAATCTTTTTCTAGCCGTGCAAAAGTAGTTTAT
GGAATACGATAGGGAAATTT

Downstream 100 bases:

>100_bases
TCTTTTCATTTTCATCCTCATTATTATTAATAAGTTAGCCGTTATCAATTGAACTCAATTGATAACGGCTAACGCTATCT
AAGTTAATTAACAATAACTG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 96; Mature: 96

Protein sequence:

>96_residues
MNELIEIEVVYGRPDKQVLLSLSVPVGSTLEDCIKLSGITTHFPEIIPSEAMVGIFSRADKLSSIVKAGDRIEIYRPLTA
DPKEMRKLRAAKMSKK

Sequences:

>Translated_96_residues
MNELIEIEVVYGRPDKQVLLSLSVPVGSTLEDCIKLSGITTHFPEIIPSEAMVGIFSRADKLSSIVKAGDRIEIYRPLTA
DPKEMRKLRAAKMSKK
>Mature_96_residues
MNELIEIEVVYGRPDKQVLLSLSVPVGSTLEDCIKLSGITTHFPEIIPSEAMVGIFSRADKLSSIVKAGDRIEIYRPLTA
DPKEMRKLRAAKMSKK

Specific function: Unknown

COG id: COG2914

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0125 (rnfH) family

Homologues:

Organism=Escherichia coli, GI87082139, Length=92, Percent_Identity=46.7391304347826, Blast_Score=84, Evalue=1e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RNFH_PSYIN (A1SV86)

Other databases:

- EMBL:   CP000510
- RefSeq:   YP_943000.1
- ProteinModelPortal:   A1SV86
- SMR:   A1SV86
- STRING:   A1SV86
- GeneID:   4624633
- GenomeReviews:   CP000510_GR
- KEGG:   pin:Ping_1604
- eggNOG:   COG2914
- HOGENOM:   HBG700644
- OMA:   PKDVRRK
- PhylomeDB:   A1SV86
- BioCyc:   PING357804:PING_1604-MONOMER
- HAMAP:   MF_00460
- InterPro:   IPR005346

Pfam domain/function: PF03658 UPF0125

EC number: NA

Molecular weight: Translated: 10672; Mature: 10672

Theoretical pI: Translated: 9.15; Mature: 9.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNELIEIEVVYGRPDKQVLLSLSVPVGSTLEDCIKLSGITTHFPEIIPSEAMVGIFSRAD
CCCEEEEEEEECCCCCEEEEEECCCCCCCHHHHHHHCCCCCCCHHHCCCHHHHHHHHHHH
KLSSIVKAGDRIEIYRPLTADPKEMRKLRAAKMSKK
HHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHCCCC
>Mature Secondary Structure
MNELIEIEVVYGRPDKQVLLSLSVPVGSTLEDCIKLSGITTHFPEIIPSEAMVGIFSRAD
CCCEEEEEEEECCCCCEEEEEECCCCCCCHHHHHHHCCCCCCCHHHCCCHHHHHHHHHHH
KLSSIVKAGDRIEIYRPLTADPKEMRKLRAAKMSKK
HHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA