Click here to switch to the map view.

The map label for this gene is ygcJ [H]

Identifier: 119945306

GI number: 119945306

Start: 1943988

End: 1945001

Strand: Direct

Name: ygcJ [H]

Synonym: Ping_1589

Alternate gene names: 119945306

Gene position: 1943988-1945001 (Clockwise)

Preceding gene: 119945305

Following gene: 119945307

Centisome position: 42.64

GC content: 39.45

Gene sequence:

>1014_bases
ATGACAACGTTTATTAATATTCATACCCTTATTTCTCATCCATCATCGATGATGAATCGTGATGATTCAGGCATGCAAAA
AACCGCTGTTTTTGGTGGTAGTGTACGCAGTCGTATTTCCAGCCAATGTTTAAAGCGTGCTATTCGCCAAAGCGATATTT
ATGGAGAAGCAGTTGCTGAAAAGTCTATTCGTACCAATAAGTTTGATGAATTGTTAGATCTATGCAAAGAAGCAATGCCT
GAAACTGATATTAAACTAATTGAAGATGTGTTGTTAAACATGGGTTCGAAAGTAACTAAAGATAAGAAAACTGAGATACG
CAATTTCGATGCTGTTCAACCTTATGCAATAGGCTCAATACGTGAAGCCATTAATATGGTGAATGAAGGAACTGAATTAA
AAGATCTTAAAAAAATTGTGCAAATCCCAACCATTGATGTGGCGTTGTCAGGTCGGATGGATGCTAGCTGCCCACCGCGA
AATGTTGAAGCGGCAATGAGTGTGGCACACAGCTTAACCACGCACAGCGCGGATATTGAAGTAGATTGGTTTACCGCCTG
TGATGATTTAGCAGAGCAAGGCTCCGGACATATAGGGACAACGGAATTCAGCTCGGGCGTATTTTATCGTTATGCGTCAA
TCAATGTTGATTTATTGGCAAAAAATGTTAAATCCACTGTGAGTGAAGTAACACCCATTATTAATACTATGATCCGCTGT
TTTGCTCAGGTATCACCTAGCGCCAAGCAAAAAGTATTTGCAGCCTACAATCAAGCTGATTTTGTGATGGCCACACATTC
CAACCAGCCGATTTCCCTTGCCAATGCATTTAGAAAACCGATTGAAAATAATGGTGATGTGATGGAAAACTCGATCGCTG
CGTTAGTGAAACATTATGAAAAGCTCACCAATGCTTATGAGCTTGACTCAAAAGCGATAGCACTCGATTTAACCGATAGT
GCGCAAAGTAAACAAATCAATTTGGTTAACAAAATCAGTGATATTCGTTTTTAA

Upstream 100 bases:

>100_bases
ACAATGCCCGCCGTAATCTATTAAAAAACTTCATTTTATCAGCTAACGATACACAAACCGCTAGCTAACCATTATCAAAT
TAATCCAAAGGATATTTTCC

Downstream 100 bases:

>100_bases
GTTTGCATAGGATACGTGTGATGAAAACCTTGATATTAAAAACCGAAGGAATGTCGGCCTACGGTCTGCAAACTTTTGAT
GTGCACCGTAGAGCAAATCA

Product: CRISPR-associated Cse4 family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 337; Mature: 336

Protein sequence:

>337_residues
MTTFINIHTLISHPSSMMNRDDSGMQKTAVFGGSVRSRISSQCLKRAIRQSDIYGEAVAEKSIRTNKFDELLDLCKEAMP
ETDIKLIEDVLLNMGSKVTKDKKTEIRNFDAVQPYAIGSIREAINMVNEGTELKDLKKIVQIPTIDVALSGRMDASCPPR
NVEAAMSVAHSLTTHSADIEVDWFTACDDLAEQGSGHIGTTEFSSGVFYRYASINVDLLAKNVKSTVSEVTPIINTMIRC
FAQVSPSAKQKVFAAYNQADFVMATHSNQPISLANAFRKPIENNGDVMENSIAALVKHYEKLTNAYELDSKAIALDLTDS
AQSKQINLVNKISDIRF

Sequences:

>Translated_337_residues
MTTFINIHTLISHPSSMMNRDDSGMQKTAVFGGSVRSRISSQCLKRAIRQSDIYGEAVAEKSIRTNKFDELLDLCKEAMP
ETDIKLIEDVLLNMGSKVTKDKKTEIRNFDAVQPYAIGSIREAINMVNEGTELKDLKKIVQIPTIDVALSGRMDASCPPR
NVEAAMSVAHSLTTHSADIEVDWFTACDDLAEQGSGHIGTTEFSSGVFYRYASINVDLLAKNVKSTVSEVTPIINTMIRC
FAQVSPSAKQKVFAAYNQADFVMATHSNQPISLANAFRKPIENNGDVMENSIAALVKHYEKLTNAYELDSKAIALDLTDS
AQSKQINLVNKISDIRF
>Mature_336_residues
TTFINIHTLISHPSSMMNRDDSGMQKTAVFGGSVRSRISSQCLKRAIRQSDIYGEAVAEKSIRTNKFDELLDLCKEAMPE
TDIKLIEDVLLNMGSKVTKDKKTEIRNFDAVQPYAIGSIREAINMVNEGTELKDLKKIVQIPTIDVALSGRMDASCPPRN
VEAAMSVAHSLTTHSADIEVDWFTACDDLAEQGSGHIGTTEFSSGVFYRYASINVDLLAKNVKSTVSEVTPIINTMIRCF
AQVSPSAKQKVFAAYNQADFVMATHSNQPISLANAFRKPIENNGDVMENSIAALVKHYEKLTNAYELDSKAIALDLTDSA
QSKQINLVNKISDIRF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1789116, Length=356, Percent_Identity=40.7303370786517, Blast_Score=249, Evalue=1e-67,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010148 [H]

Pfam domain/function: PF09344 Cas_CT1975 [H]

EC number: NA

Molecular weight: Translated: 37166; Mature: 37034

Theoretical pI: Translated: 6.18; Mature: 6.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTFINIHTLISHPSSMMNRDDSGMQKTAVFGGSVRSRISSQCLKRAIRQSDIYGEAVAE
CCEEEEHHHHHHCCHHHHCCCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHH
KSIRTNKFDELLDLCKEAMPETDIKLIEDVLLNMGSKVTKDKKTEIRNFDAVQPYAIGSI
HHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCHHHHHCCCCCCCCHHHHHH
REAINMVNEGTELKDLKKIVQIPTIDVALSGRMDASCPPRNVEAAMSVAHSLTTHSADIE
HHHHHHHHCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCEE
VDWFTACDDLAEQGSGHIGTTEFSSGVFYRYASINVDLLAKNVKSTVSEVTPIINTMIRC
EEHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHH
FAQVSPSAKQKVFAAYNQADFVMATHSNQPISLANAFRKPIENNGDVMENSIAALVKHYE
HHHCCCHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH
KLTNAYELDSKAIALDLTDSAQSKQINLVNKISDIRF
HHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHCCC
>Mature Secondary Structure 
TTFINIHTLISHPSSMMNRDDSGMQKTAVFGGSVRSRISSQCLKRAIRQSDIYGEAVAE
CEEEEHHHHHHCCHHHHCCCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHH
KSIRTNKFDELLDLCKEAMPETDIKLIEDVLLNMGSKVTKDKKTEIRNFDAVQPYAIGSI
HHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCHHHHHCCCCCCCCHHHHHH
REAINMVNEGTELKDLKKIVQIPTIDVALSGRMDASCPPRNVEAAMSVAHSLTTHSADIE
HHHHHHHHCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCEE
VDWFTACDDLAEQGSGHIGTTEFSSGVFYRYASINVDLLAKNVKSTVSEVTPIINTMIRC
EEHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHH
FAQVSPSAKQKVFAAYNQADFVMATHSNQPISLANAFRKPIENNGDVMENSIAALVKHYE
HHHCCCHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH
KLTNAYELDSKAIALDLTDSAQSKQINLVNKISDIRF
HHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]