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The map label for this gene is ydiU [C]

Identifier: 119945288

GI number: 119945288

Start: 1916737

End: 1918191

Strand: Reverse

Name: ydiU [C]

Synonym: Ping_1567

Alternate gene names: 119945288

Gene position: 1918191-1916737 (Counterclockwise)

Preceding gene: 119945289

Following gene: 119945287

Centisome position: 42.07

GC content: 46.87

Gene sequence:

>1455_bases
ATGAAATTTACTAATACTTATGCCCAGCTCGGTGATGCGTTTTTTAAGCGTGTTTTACCGCTGCCTGTTGCCCAGCCCAA
ATTACTGATCTGGAATGATAAGCTCGCTGAAAGCCTGGGCTTGGGTGCAGCTTTACTCAGCGATTCTGATTTAAAAGCCC
ATATTTTTTCTGGAAATCAGTTGCCCGAGGGCGCGGAGAGTATTGCTTTAGCTTACAGTGGGCATCAATTTGGCCAGCTC
AATCCGCAATTGGGTGATGGTCGTGCACATCTACTCGGTGAGTTAATGGATAGCAGCAACCATCGCGTTGATATCCAGTT
AAAGGGCTCAGGTCCCACACCCTTTTCGAGGCAGGGTGATGGTCGTTGTGCATTAGGCCCTGCCTTGCGTGAATTTATCA
TGAGTGAGGCGATGTACTATTTAGGTGTGCCCACATCACGCTGCTTGTCGGTGGTAGCGACAGGGGAGACCGTTTATCGA
GAAAGAGGCAGACCGGGAGCTGTTGTCACCCGGGTTGCTGCAAGCCATATCCGCGTAGGAACGTTTCAGTACTTTGCTAT
CAGAAAAGATACAGAGTCGTTGAGAGCTTTATTGGCTTACACCGTCGAGCGTCATTTTCCAGAGATTAGTTCCGATGGTG
AGGACCTCGAGCTTGATTTTCTTGATGCGGTGATGGAAAAGCAAATTACTTTGATTGTCGAGTGGATGCGAGTTGGTTTT
ATCCATGGTGTGATGAACACGGACAACAGCGCTATCTCCGGTGAAACCATTGACTTTGGGCCCTGCGCAATGATGGGCGC
CTATGACCCAGGGACCGTGTATAGCTCAATTGATACTCAGGGTCGATACGCTTTTGGTAATCAGCCCAATATTGCTCTAT
GGAATATTACTCGGCTCGCAGAATGCCTGTTGCCACTCATTAACAGTGAGCAAGACGCGGCTATTGCCAGCTTAGAACCG
TTACTCAAAACGTTTACTGATCGCTTTCAAAATAGTTATTTCAAGATGCTGGGTAGTAAGCTCGGAATGACGGATTTTGC
GCTGAGCGATCAGGATTTTATTCTAGAGCTAATGGAAGTAATGCAGGCAAAGAAATTAGACTATACGCAAACTTTTAGCA
TGTTGACACAGTCCCTTGATGATGACGTGGCTGCTGAAAAATCACAGAAAAACCTCGGGGATTGGTACATTGCCTGGAGG
GGGCGCCTGGAGCAATCAGCAGATACGATTGAGTGTTCACGCTTATTGATGAAAGAAAAAAATCCGCTTGTTATCCCCAG
GAATCATCACGTCGAGGCCGTTCTAAAAGCCTGTGAAGACAGTGGTACTGCCGTTGCAGCAGATGACTTTCTCAGCGTTT
TACGTTCGCCTTATTTTGAGATACCTACCACCGTAAATTATCAGGATTTTCCTGTAGACGGCGATAAGGGTTATCATACT
TTTTGTGGTACGTAA

Upstream 100 bases:

>100_bases
ATAAGCAGTAATAAATCTAACCTTGTGCGCATAGAAGGGTGTATCCTTGGCAGCCTAACGATTGGCTTTTCTTTTTTCCA
GCAATGACACATGATGAATT

Downstream 100 bases:

>100_bases
TGAAAAATAATTTTTTAAATAGAGCTTTCACCTTGTCTGTCTTGAGTAAATTTAGATTCAGGAATAAAAGGCTGAGACGT
TTTGCGACTTAGAAACCTAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 484; Mature: 484

Protein sequence:

>484_residues
MKFTNTYAQLGDAFFKRVLPLPVAQPKLLIWNDKLAESLGLGAALLSDSDLKAHIFSGNQLPEGAESIALAYSGHQFGQL
NPQLGDGRAHLLGELMDSSNHRVDIQLKGSGPTPFSRQGDGRCALGPALREFIMSEAMYYLGVPTSRCLSVVATGETVYR
ERGRPGAVVTRVAASHIRVGTFQYFAIRKDTESLRALLAYTVERHFPEISSDGEDLELDFLDAVMEKQITLIVEWMRVGF
IHGVMNTDNSAISGETIDFGPCAMMGAYDPGTVYSSIDTQGRYAFGNQPNIALWNITRLAECLLPLINSEQDAAIASLEP
LLKTFTDRFQNSYFKMLGSKLGMTDFALSDQDFILELMEVMQAKKLDYTQTFSMLTQSLDDDVAAEKSQKNLGDWYIAWR
GRLEQSADTIECSRLLMKEKNPLVIPRNHHVEAVLKACEDSGTAVAADDFLSVLRSPYFEIPTTVNYQDFPVDGDKGYHT
FCGT

Sequences:

>Translated_484_residues
MKFTNTYAQLGDAFFKRVLPLPVAQPKLLIWNDKLAESLGLGAALLSDSDLKAHIFSGNQLPEGAESIALAYSGHQFGQL
NPQLGDGRAHLLGELMDSSNHRVDIQLKGSGPTPFSRQGDGRCALGPALREFIMSEAMYYLGVPTSRCLSVVATGETVYR
ERGRPGAVVTRVAASHIRVGTFQYFAIRKDTESLRALLAYTVERHFPEISSDGEDLELDFLDAVMEKQITLIVEWMRVGF
IHGVMNTDNSAISGETIDFGPCAMMGAYDPGTVYSSIDTQGRYAFGNQPNIALWNITRLAECLLPLINSEQDAAIASLEP
LLKTFTDRFQNSYFKMLGSKLGMTDFALSDQDFILELMEVMQAKKLDYTQTFSMLTQSLDDDVAAEKSQKNLGDWYIAWR
GRLEQSADTIECSRLLMKEKNPLVIPRNHHVEAVLKACEDSGTAVAADDFLSVLRSPYFEIPTTVNYQDFPVDGDKGYHT
FCGT
>Mature_484_residues
MKFTNTYAQLGDAFFKRVLPLPVAQPKLLIWNDKLAESLGLGAALLSDSDLKAHIFSGNQLPEGAESIALAYSGHQFGQL
NPQLGDGRAHLLGELMDSSNHRVDIQLKGSGPTPFSRQGDGRCALGPALREFIMSEAMYYLGVPTSRCLSVVATGETVYR
ERGRPGAVVTRVAASHIRVGTFQYFAIRKDTESLRALLAYTVERHFPEISSDGEDLELDFLDAVMEKQITLIVEWMRVGF
IHGVMNTDNSAISGETIDFGPCAMMGAYDPGTVYSSIDTQGRYAFGNQPNIALWNITRLAECLLPLINSEQDAAIASLEP
LLKTFTDRFQNSYFKMLGSKLGMTDFALSDQDFILELMEVMQAKKLDYTQTFSMLTQSLDDDVAAEKSQKNLGDWYIAWR
GRLEQSADTIECSRLLMKEKNPLVIPRNHHVEAVLKACEDSGTAVAADDFLSVLRSPYFEIPTTVNYQDFPVDGDKGYHT
FCGT

Specific function: Unknown

COG id: COG0397

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0061 (SELO) family [H]

Homologues:

Organism=Homo sapiens, GI32880229, Length=389, Percent_Identity=40.3598971722365, Blast_Score=258, Evalue=7e-69,
Organism=Escherichia coli, GI1787999, Length=470, Percent_Identity=35.531914893617, Blast_Score=299, Evalue=2e-82,
Organism=Saccharomyces cerevisiae, GI6325034, Length=422, Percent_Identity=31.2796208530806, Blast_Score=170, Evalue=4e-43,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003846 [H]

Pfam domain/function: PF02696 UPF0061 [H]

EC number: NA

Molecular weight: Translated: 53600; Mature: 53600

Theoretical pI: Translated: 4.76; Mature: 4.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKFTNTYAQLGDAFFKRVLPLPVAQPKLLIWNDKLAESLGLGAALLSDSDLKAHIFSGNQ
CCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECHHHHHHHCCCHHEECCCCCEEEEECCCC
LPEGAESIALAYSGHQFGQLNPQLGDGRAHLLGELMDSSNHRVDIQLKGSGPTPFSRQGD
CCCCHHHEEEEECCCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCC
GRCALGPALREFIMSEAMYYLGVPTSRCLSVVATGETVYRERGRPGAVVTRVAASHIRVG
CCEECCHHHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHCCCCCHHHHHHHHHHEEEC
TFQYFAIRKDTESLRALLAYTVERHFPEISSDGEDLELDFLDAVMEKQITLIVEWMRVGF
EEEEEEEECCHHHHHHHHHHHHHHHCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHH
IHGVMNTDNSAISGETIDFGPCAMMGAYDPGTVYSSIDTQGRYAFGNQPNIALWNITRLA
HHHHCCCCCCCCCCCCCCCCCCCEECCCCCCCEEECCCCCCCEEECCCCCEEEEEHHHHH
ECLLPLINSEQDAAIASLEPLLKTFTDRFQNSYFKMLGSKLGMTDFALSDQDFILELMEV
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCHHHHHHHHHH
MQAKKLDYTQTFSMLTQSLDDDVAAEKSQKNLGDWYIAWRGRLEQSADTIECSRLLMKEK
HHHHCCCHHHHHHHHHHHHCHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHCC
NPLVIPRNHHVEAVLKACEDSGTAVAADDFLSVLRSPYFEIPTTVNYQDFPVDGDKGYHT
CCEEECCCCCHHHHHHHHCCCCCEEEHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
FCGT
CCCC
>Mature Secondary Structure
MKFTNTYAQLGDAFFKRVLPLPVAQPKLLIWNDKLAESLGLGAALLSDSDLKAHIFSGNQ
CCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECHHHHHHHCCCHHEECCCCCEEEEECCCC
LPEGAESIALAYSGHQFGQLNPQLGDGRAHLLGELMDSSNHRVDIQLKGSGPTPFSRQGD
CCCCHHHEEEEECCCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCC
GRCALGPALREFIMSEAMYYLGVPTSRCLSVVATGETVYRERGRPGAVVTRVAASHIRVG
CCEECCHHHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHCCCCCHHHHHHHHHHEEEC
TFQYFAIRKDTESLRALLAYTVERHFPEISSDGEDLELDFLDAVMEKQITLIVEWMRVGF
EEEEEEEECCHHHHHHHHHHHHHHHCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHH
IHGVMNTDNSAISGETIDFGPCAMMGAYDPGTVYSSIDTQGRYAFGNQPNIALWNITRLA
HHHHCCCCCCCCCCCCCCCCCCCEECCCCCCCEEECCCCCCCEEECCCCCEEEEEHHHHH
ECLLPLINSEQDAAIASLEPLLKTFTDRFQNSYFKMLGSKLGMTDFALSDQDFILELMEV
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCHHHHHHHHHH
MQAKKLDYTQTFSMLTQSLDDDVAAEKSQKNLGDWYIAWRGRLEQSADTIECSRLLMKEK
HHHHCCCHHHHHHHHHHHHCHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHCC
NPLVIPRNHHVEAVLKACEDSGTAVAADDFLSVLRSPYFEIPTTVNYQDFPVDGDKGYHT
CCEEECCCCCHHHHHHHHCCCCCEEEHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
FCGT
CCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA