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The map label for this gene is yciR [C]

Identifier: 119945285

GI number: 119945285

Start: 1910942

End: 1912774

Strand: Direct

Name: yciR [C]

Synonym: Ping_1562

Alternate gene names: 119945285

Gene position: 1910942-1912774 (Clockwise)

Preceding gene: 119945284

Following gene: 119945290

Centisome position: 41.91

GC content: 46.26

Gene sequence:

>1833_bases
ATGAACCGTAATAATCTGAAAAGCAGTCTAGCAGAACTAGTCAACACTGAATTTTCCCTTCAAAATGAAGAAAATAATAA
ATGGGCAGTAGAGCTGGCCATTGCTAACAGGAAGCTTGCTTTTCAAAATGAAGAGAAGGATAAACGAGCAGCAGAGCTGG
ATATAGCCAACAAGGAGCTTGCTTTTCAAAACGAAGAGAAGGATAAACGGGCAGCAGAGCTGGTCATTGCTAACAGGAAG
CTTGCTTTTCAAAATGAAGAGAAGGATAAACGAGCAGCAGAGCTGGATATTGCCAACAAGGAGAAGGATAAACGGGCAGC
AGAGCTTGCCATTGCGAACAAGGAGCTTGCCTTTCAAAACGAAGAGAAGGATAAACGGGCAGCGGAGCTTGCCATTGCCA
ACAAGGAGCTTGCCTTTCAAAACGAAGAAAAAAGTAAACGTGCAGCAGAGCTTGCCATTGCCAACAAGGAGCTTGCCTTT
CAAAACGAAGAAAAAAGTAAACGGGCAGAAGAGCTCAATGACCTCGCCTTCTATGATGCGCTTACCGGCTTGCCCAATAG
ACGTATTTTGATAGACCGGCTGCATCACGCATTATCGTCCAACGTGCGTCAAGGCTTTGAGAGTGCGGTGATGTTTATTG
ATTTGGATCATTTCAAGGATATCAACGACACCCTCGGCCATGAAGTGGGTGATTTACTGCTGATACAGATAGCGCAACGC
CTGGAGTCCTGTCTACGCAAATGCGATACCGTGGCGCGTCTGGGTGGGGACGAGTTTGTGTTGATTCTGGAAAACCTGGA
CCAAAAAACCATTGAAGCCGCAGCCAAGGCGAATTTCATTGCTGATAAAATTTTTGCTGCGCTCAACAAACCTTACCAGC
TCGATATGCACGAATGCTACAGCACTGTGAGTATCGGTTTGGCCTTTTTCGGCCACGAGGGTAAGACAGCAGAAGGTCTG
CTGAAACAAGCCGACATCGCCATGTATCAGGCCAAAAAAGCCGGCGGCAATACAATGAGGTTCTTTAACCAGAAAATGCA
GGACATCATTAACGTACGGACAAGCCTCGAACATGAATTGCGTATTGCAGTTGCAAAGTCGCAATTTAATTTGTATTACC
AAATTCAAATGGATAGTTCCAACCGAGTATGGGGGGCCGAAGCATTGATCCGTTGGGTGCACCCTGAACGCGGGCTGGTG
TCACCTGCCACCTTTATCCCTCTGGCGGAAGAAACCGGATTAATTCTGCCTATTGGGCAATGGGTTATAGAGACGGCTTG
TGCGCAGATCAAAATATGGCAGAAAGAGTCGCTGACCCGCGACTTGACACTGTCAGTAAACGTGAGTGCAAAACAATTCC
GGCAGACGGATTTCGTGGATCAAGTGCAGTCAGCTGTGCGCCGACATGCTATTTCCGCAAATTTACTCAAGCTGGAATTG
ACCGAAAGTTTGTTCCAAGAGGACATCAAAGTCACCATTGCCACCATGAACGCATTAAATAATATTGGCATTCAGTTCTC
TCTAGACGACTTCGGCACTGGCTATTCGTCCTTACAGTACCTCAAGCAGCTACCGCTCGACCAGATCAAGATAGACCAGT
CGTTCGTGCGCGATATTGCGATAGATAGTAATGACAGAGCGATAGTAAAGGCAATCATTGCTATGGCACACATTCTGAAG
ATAGACGTCATTGCCGAGGGAGTGGAAACGGAAGAGCAACGACAATTACTCTTAGGCAAAGGATGCTCATTCTTCCAAGG
GTATTTATTTAGCAAACCGATACCTATTGAGCAGTTTGAAGCGTTAATCCGTAGTGGTTCAGAGTTTAATTGA

Upstream 100 bases:

>100_bases
TTTGTTGTCTTTTTATGGCTCGGTACCAAAATAATGGTTATGCTTAATGGTTATGCTAGTTGCTTAATAGCTAAACGAGA
TAACGACACAAGGGACTAAA

Downstream 100 bases:

>100_bases
CACCGGATTTTATACAGTGAGGGTACCGGTGTTGGTGGGGCCAAACTAACCATTAAATAGCGATCGCCATGCGAAAGCGA
ATTAGTTTTCTAAGGCGGTT

Product: diguanylate cyclase/phosphodiesterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 610; Mature: 610

Protein sequence:

>610_residues
MNRNNLKSSLAELVNTEFSLQNEENNKWAVELAIANRKLAFQNEEKDKRAAELDIANKELAFQNEEKDKRAAELVIANRK
LAFQNEEKDKRAAELDIANKEKDKRAAELAIANKELAFQNEEKDKRAAELAIANKELAFQNEEKSKRAAELAIANKELAF
QNEEKSKRAEELNDLAFYDALTGLPNRRILIDRLHHALSSNVRQGFESAVMFIDLDHFKDINDTLGHEVGDLLLIQIAQR
LESCLRKCDTVARLGGDEFVLILENLDQKTIEAAAKANFIADKIFAALNKPYQLDMHECYSTVSIGLAFFGHEGKTAEGL
LKQADIAMYQAKKAGGNTMRFFNQKMQDIINVRTSLEHELRIAVAKSQFNLYYQIQMDSSNRVWGAEALIRWVHPERGLV
SPATFIPLAEETGLILPIGQWVIETACAQIKIWQKESLTRDLTLSVNVSAKQFRQTDFVDQVQSAVRRHAISANLLKLEL
TESLFQEDIKVTIATMNALNNIGIQFSLDDFGTGYSSLQYLKQLPLDQIKIDQSFVRDIAIDSNDRAIVKAIIAMAHILK
IDVIAEGVETEEQRQLLLGKGCSFFQGYLFSKPIPIEQFEALIRSGSEFN

Sequences:

>Translated_610_residues
MNRNNLKSSLAELVNTEFSLQNEENNKWAVELAIANRKLAFQNEEKDKRAAELDIANKELAFQNEEKDKRAAELVIANRK
LAFQNEEKDKRAAELDIANKEKDKRAAELAIANKELAFQNEEKDKRAAELAIANKELAFQNEEKSKRAAELAIANKELAF
QNEEKSKRAEELNDLAFYDALTGLPNRRILIDRLHHALSSNVRQGFESAVMFIDLDHFKDINDTLGHEVGDLLLIQIAQR
LESCLRKCDTVARLGGDEFVLILENLDQKTIEAAAKANFIADKIFAALNKPYQLDMHECYSTVSIGLAFFGHEGKTAEGL
LKQADIAMYQAKKAGGNTMRFFNQKMQDIINVRTSLEHELRIAVAKSQFNLYYQIQMDSSNRVWGAEALIRWVHPERGLV
SPATFIPLAEETGLILPIGQWVIETACAQIKIWQKESLTRDLTLSVNVSAKQFRQTDFVDQVQSAVRRHAISANLLKLEL
TESLFQEDIKVTIATMNALNNIGIQFSLDDFGTGYSSLQYLKQLPLDQIKIDQSFVRDIAIDSNDRAIVKAIIAMAHILK
IDVIAEGVETEEQRQLLLGKGCSFFQGYLFSKPIPIEQFEALIRSGSEFN
>Mature_610_residues
MNRNNLKSSLAELVNTEFSLQNEENNKWAVELAIANRKLAFQNEEKDKRAAELDIANKELAFQNEEKDKRAAELVIANRK
LAFQNEEKDKRAAELDIANKEKDKRAAELAIANKELAFQNEEKDKRAAELAIANKELAFQNEEKSKRAAELAIANKELAF
QNEEKSKRAEELNDLAFYDALTGLPNRRILIDRLHHALSSNVRQGFESAVMFIDLDHFKDINDTLGHEVGDLLLIQIAQR
LESCLRKCDTVARLGGDEFVLILENLDQKTIEAAAKANFIADKIFAALNKPYQLDMHECYSTVSIGLAFFGHEGKTAEGL
LKQADIAMYQAKKAGGNTMRFFNQKMQDIINVRTSLEHELRIAVAKSQFNLYYQIQMDSSNRVWGAEALIRWVHPERGLV
SPATFIPLAEETGLILPIGQWVIETACAQIKIWQKESLTRDLTLSVNVSAKQFRQTDFVDQVQSAVRRHAISANLLKLEL
TESLFQEDIKVTIATMNALNNIGIQFSLDDFGTGYSSLQYLKQLPLDQIKIDQSFVRDIAIDSNDRAIVKAIIAMAHILK
IDVIAEGVETEEQRQLLLGKGCSFFQGYLFSKPIPIEQFEALIRSGSEFN

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=437, Percent_Identity=36.3844393592677, Blast_Score=293, Evalue=2e-80,
Organism=Escherichia coli, GI87081921, Length=462, Percent_Identity=35.4978354978355, Blast_Score=267, Evalue=2e-72,
Organism=Escherichia coli, GI226510982, Length=438, Percent_Identity=30.8219178082192, Blast_Score=203, Evalue=3e-53,
Organism=Escherichia coli, GI1786507, Length=280, Percent_Identity=35, Blast_Score=158, Evalue=9e-40,
Organism=Escherichia coli, GI1787055, Length=462, Percent_Identity=28.3549783549784, Blast_Score=152, Evalue=9e-38,
Organism=Escherichia coli, GI1790496, Length=246, Percent_Identity=35.7723577235772, Blast_Score=145, Evalue=7e-36,
Organism=Escherichia coli, GI87081980, Length=258, Percent_Identity=32.1705426356589, Blast_Score=142, Evalue=7e-35,
Organism=Escherichia coli, GI87081845, Length=263, Percent_Identity=35.7414448669202, Blast_Score=137, Evalue=1e-33,
Organism=Escherichia coli, GI1788502, Length=273, Percent_Identity=29.6703296703297, Blast_Score=133, Evalue=4e-32,
Organism=Escherichia coli, GI87081743, Length=246, Percent_Identity=32.9268292682927, Blast_Score=130, Evalue=2e-31,
Organism=Escherichia coli, GI1788849, Length=429, Percent_Identity=28.2051282051282, Blast_Score=120, Evalue=2e-28,
Organism=Escherichia coli, GI87081977, Length=159, Percent_Identity=37.1069182389937, Blast_Score=100, Evalue=4e-22,
Organism=Escherichia coli, GI87082096, Length=207, Percent_Identity=29.4685990338164, Blast_Score=97, Evalue=4e-21,
Organism=Escherichia coli, GI1786584, Length=181, Percent_Identity=31.4917127071823, Blast_Score=95, Evalue=1e-20,
Organism=Escherichia coli, GI1788381, Length=185, Percent_Identity=36.2162162162162, Blast_Score=92, Evalue=9e-20,
Organism=Escherichia coli, GI87081881, Length=179, Percent_Identity=36.3128491620112, Blast_Score=90, Evalue=4e-19,
Organism=Escherichia coli, GI1788956, Length=161, Percent_Identity=39.1304347826087, Blast_Score=86, Evalue=9e-18,
Organism=Escherichia coli, GI145693134, Length=170, Percent_Identity=34.1176470588235, Blast_Score=86, Evalue=1e-17,
Organism=Escherichia coli, GI87081974, Length=87, Percent_Identity=51.7241379310345, Blast_Score=83, Evalue=4e-17,
Organism=Escherichia coli, GI1787816, Length=174, Percent_Identity=32.183908045977, Blast_Score=82, Evalue=1e-16,
Organism=Escherichia coli, GI1789650, Length=463, Percent_Identity=20.9503239740821, Blast_Score=76, Evalue=5e-15,
Organism=Escherichia coli, GI1788085, Length=169, Percent_Identity=32.5443786982249, Blast_Score=75, Evalue=9e-15,
Organism=Escherichia coli, GI1787262, Length=180, Percent_Identity=30, Blast_Score=74, Evalue=4e-14,
Organism=Escherichia coli, GI1787802, Length=206, Percent_Identity=28.6407766990291, Blast_Score=72, Evalue=1e-13,
Organism=Escherichia coli, GI87082007, Length=166, Percent_Identity=33.7349397590361, Blast_Score=69, Evalue=6e-13,
Organism=Escherichia coli, GI1787410, Length=153, Percent_Identity=29.4117647058824, Blast_Score=65, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 68924; Mature: 68924

Theoretical pI: Translated: 5.23; Mature: 5.23

Prosite motif: PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRNNLKSSLAELVNTEFSLQNEENNKWAVELAIANRKLAFQNEEKDKRAAELDIANKEL
CCCCHHHHHHHHHHCCCCEECCCCCCEEEEEEEEECCEEECCCCHHHHHHHHHCCCCCHH
AFQNEEKDKRAAELVIANRKLAFQNEEKDKRAAELDIANKEKDKRAAELAIANKELAFQN
CCCCCHHHHHHHHHHEECCEEECCCCHHHHHHHHCCCCCCCHHHHHHHHHHCCCHHCCCC
EEKDKRAAELAIANKELAFQNEEKSKRAAELAIANKELAFQNEEKSKRAEELNDLAFYDA
CHHHHHHHHHHHCCCHHCCCCCHHHHHHHHHHHCCCHHCCCCCHHHHHHHHHHHHHHHHH
LTGLPNRRILIDRLHHALSSNVRQGFESAVMFIDLDHFKDINDTLGHEVGDLLLIQIAQR
HHCCCCCHHHHHHHHHHHHHHHHHHHHHEEEEEECHHCCCCHHHHHHHHHHHHHHHHHHH
LESCLRKCDTVARLGGDEFVLILENLDQKTIEAAAKANFIADKIFAALNKPYQLDMHECY
HHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCEECHHHHH
STVSIGLAFFGHEGKTAEGLLKQADIAMYQAKKAGGNTMRFFNQKMQDIINVRTSLEHEL
HHHHHHHHEECCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHH
RIAVAKSQFNLYYQIQMDSSNRVWGAEALIRWVHPERGLVSPATFIPLAEETGLILPIGQ
EEEEEECCEEEEEEEEECCCCCEEHHHHHHHHHCCCCCCCCCHHEEEECCCCCEEEEHHH
WVIETACAQIKIWQKESLTRDLTLSVNVSAKQFRQTDFVDQVQSAVRRHAISANLLKLEL
HHHHHHHHHEEEECHHCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEHH
TESLFQEDIKVTIATMNALNNIGIQFSLDDFGTGYSSLQYLKQLPLDQIKIDQSFVRDIA
HHHHHHHHHEEEEEEHHHHHCCCEEEEECCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHH
IDSNDRAIVKAIIAMAHILKIDVIAEGVETEEQRQLLLGKGCSFFQGYLFSKPIPIEQFE
CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHCCCCCCHHHHH
ALIRSGSEFN
HHHHCCCCCC
>Mature Secondary Structure
MNRNNLKSSLAELVNTEFSLQNEENNKWAVELAIANRKLAFQNEEKDKRAAELDIANKEL
CCCCHHHHHHHHHHCCCCEECCCCCCEEEEEEEEECCEEECCCCHHHHHHHHHCCCCCHH
AFQNEEKDKRAAELVIANRKLAFQNEEKDKRAAELDIANKEKDKRAAELAIANKELAFQN
CCCCCHHHHHHHHHHEECCEEECCCCHHHHHHHHCCCCCCCHHHHHHHHHHCCCHHCCCC
EEKDKRAAELAIANKELAFQNEEKSKRAAELAIANKELAFQNEEKSKRAEELNDLAFYDA
CHHHHHHHHHHHCCCHHCCCCCHHHHHHHHHHHCCCHHCCCCCHHHHHHHHHHHHHHHHH
LTGLPNRRILIDRLHHALSSNVRQGFESAVMFIDLDHFKDINDTLGHEVGDLLLIQIAQR
HHCCCCCHHHHHHHHHHHHHHHHHHHHHEEEEEECHHCCCCHHHHHHHHHHHHHHHHHHH
LESCLRKCDTVARLGGDEFVLILENLDQKTIEAAAKANFIADKIFAALNKPYQLDMHECY
HHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCEECHHHHH
STVSIGLAFFGHEGKTAEGLLKQADIAMYQAKKAGGNTMRFFNQKMQDIINVRTSLEHEL
HHHHHHHHEECCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHH
RIAVAKSQFNLYYQIQMDSSNRVWGAEALIRWVHPERGLVSPATFIPLAEETGLILPIGQ
EEEEEECCEEEEEEEEECCCCCEEHHHHHHHHHCCCCCCCCCHHEEEECCCCCEEEEHHH
WVIETACAQIKIWQKESLTRDLTLSVNVSAKQFRQTDFVDQVQSAVRRHAISANLLKLEL
HHHHHHHHHEEEECHHCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEHH
TESLFQEDIKVTIATMNALNNIGIQFSLDDFGTGYSSLQYLKQLPLDQIKIDQSFVRDIA
HHHHHHHHHEEEEEEHHHHHCCCEEEEECCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHH
IDSNDRAIVKAIIAMAHILKIDVIAEGVETEEQRQLLLGKGCSFFQGYLFSKPIPIEQFE
CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHCCCCCCHHHHH
ALIRSGSEFN
HHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]