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The map label for this gene is ihfA

Identifier: 119945141

GI number: 119945141

Start: 1726147

End: 1726449

Strand: Direct

Name: ihfA

Synonym: Ping_1405

Alternate gene names: 119945141

Gene position: 1726147-1726449 (Clockwise)

Preceding gene: 119945140

Following gene: 119945142

Centisome position: 37.86

GC content: 38.94

Gene sequence:

>303_bases
ATGGCACTGACTAAAGCTGAAATAGCAGCAGATTTATCGGTAAAAATCGGTTTAAGCAAACGCGAAGCAAAAGAGTTTGT
TGAATCTTTTTTTGAAGAAATTAAAGCAACACTGGAAAACGGAGAAGCGGTAAAAATCTCGGGTTTTGGTGGCTTTGAAT
TAAAAGATAAAAGTGAGCGTCCAGGTCGAAATCCTAAAACTGGCGAAGATATTCCCATTGCTGCTCGTCGAGTTGTGACC
TTTCGGGCAGGACAGAAACTAAAAGAATTGGTAGAAAAAAATATGCCTGATACAGAGGTATAA

Upstream 100 bases:

>100_bases
TACTACACGCACCTTGGAAGAACAGGAGATTGCTGACAATGTAACGAAAATTGTTGAAGCGGTTTCTAACAAGTTTAATG
CATCATTGAGAGATTAATTT

Downstream 100 bases:

>100_bases
TTTTACTGAAGATAAAAAAGTCGCTTTTGTGGCTTTTTTATCTTCATTCTATGCGTGTTAAAACAGAGGCTAGCCAGAGA
GTACACTCTCTTTTAGTCTA

Product: integration host factor, alpha subunit

Products: NA

Alternate protein names: IHF-alpha

Number of amino acids: Translated: 100; Mature: 99

Protein sequence:

>100_residues
MALTKAEIAADLSVKIGLSKREAKEFVESFFEEIKATLENGEAVKISGFGGFELKDKSERPGRNPKTGEDIPIAARRVVT
FRAGQKLKELVEKNMPDTEV

Sequences:

>Translated_100_residues
MALTKAEIAADLSVKIGLSKREAKEFVESFFEEIKATLENGEAVKISGFGGFELKDKSERPGRNPKTGEDIPIAARRVVT
FRAGQKLKELVEKNMPDTEV
>Mature_99_residues
ALTKAEIAADLSVKIGLSKREAKEFVESFFEEIKATLENGEAVKISGFGGFELKDKSERPGRNPKTGEDIPIAARRVVTF
RAGQKLKELVEKNMPDTEV

Specific function: This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control

COG id: COG0776

COG function: function code L; Bacterial nucleoid DNA-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial histone-like protein family

Homologues:

Organism=Escherichia coli, GI1788005, Length=99, Percent_Identity=70.7070707070707, Blast_Score=139, Evalue=3e-35,
Organism=Escherichia coli, GI1790433, Length=90, Percent_Identity=40, Blast_Score=69, Evalue=7e-14,
Organism=Escherichia coli, GI1786644, Length=90, Percent_Identity=34.4444444444444, Blast_Score=65, Evalue=9e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): IHFA_PSYIN (A1SUQ7)

Other databases:

- EMBL:   CP000510
- RefSeq:   YP_942821.1
- ProteinModelPortal:   A1SUQ7
- SMR:   A1SUQ7
- STRING:   A1SUQ7
- GeneID:   4623820
- GenomeReviews:   CP000510_GR
- KEGG:   pin:Ping_1405
- eggNOG:   COG0776
- HOGENOM:   HBG705085
- OMA:   VRGETVK
- PhylomeDB:   A1SUQ7
- BioCyc:   PING357804:PING_1405-MONOMER
- GO:   GO:0006350
- HAMAP:   MF_00380
- InterPro:   IPR000119
- InterPro:   IPR020816
- InterPro:   IPR010992
- InterPro:   IPR005684
- Gene3D:   G3DSA:4.10.520.10
- PRINTS:   PR01727
- SMART:   SM00411
- TIGRFAMs:   TIGR00987

Pfam domain/function: PF00216 Bac_DNA_binding; SSF47729 IHF_like_DNA_bnd

EC number: NA

Molecular weight: Translated: 11039; Mature: 10908

Theoretical pI: Translated: 6.97; Mature: 6.97

Prosite motif: PS00045 HISTONE_LIKE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALTKAEIAADLSVKIGLSKREAKEFVESFFEEIKATLENGEAVKISGFGGFELKDKSER
CCCCCCHHHHCCEEEECCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCC
PGRNPKTGEDIPIAARRVVTFRAGQKLKELVEKNMPDTEV
CCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
ALTKAEIAADLSVKIGLSKREAKEFVESFFEEIKATLENGEAVKISGFGGFELKDKSER
CCCCCHHHHCCEEEECCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCC
PGRNPKTGEDIPIAARRVVTFRAGQKLKELVEKNMPDTEV
CCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA