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The map label for this gene is yqgF [C]

Identifier: 119945031

GI number: 119945031

Start: 1591362

End: 1591799

Strand: Reverse

Name: yqgF [C]

Synonym: Ping_1285

Alternate gene names: 119945031

Gene position: 1591799-1591362 (Counterclockwise)

Preceding gene: 119945032

Following gene: 119945028

Centisome position: 34.91

GC content: 42.01

Gene sequence:

>438_bases
ATGACTGAACCATTAAAATCACCTTCAAACCTGTTAGGTTTTGATTTCGGTACAAAAAGTATCGGTGTCGCAACCGGTCA
AATGATCACCGCAACCGCTCAGCCATTATCAGCCATTAAAGCAAATGACGGTATTCCAAACTGGGATATTGTGGAAAAAG
TGATCCGCGACTGGATGCCTGACTTAATTGTTGTAGGCTTACCCCTGAATATGGATGGCAGCGAACAGCCCATTACACAA
CGCGCCAAAAAATTTGCCAACCGTTTAAATGGTCGCTTTGGTGTTAAAGTTGCCTTACAGGATGAGCGTTTAACCACAGC
CAGTGCAAAAGAATTTATCTTTACACATGGCGGCTATAAAGCCCTTGAAAAAGGAAAAATTGACAGCGTATCAGCCGCTC
TTATTCTTGAAAGCTGGATGGAAAACTTTTATCAATAA

Upstream 100 bases:

>100_bases
CTGAGATAGGTCACGCATAACCGAGTCATCAATACCATCAAATTCCTTACAGCTATTTTTTATAAAAGCCGGTAATAATA
CCCTTTAAGCCAGGACACAC

Downstream 100 bases:

>100_bases
GCGTTTTATTAATAAACCCACTGGTAAAAGCGAAAATACCTAAAGGCAGATTGTAAGTTGCTCTAACGGACAGTCTGTTT
TCTTCATTAAGATATCCCGG

Product: Holliday junction resolvase YqgF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 145; Mature: 144

Protein sequence:

>145_residues
MTEPLKSPSNLLGFDFGTKSIGVATGQMITATAQPLSAIKANDGIPNWDIVEKVIRDWMPDLIVVGLPLNMDGSEQPITQ
RAKKFANRLNGRFGVKVALQDERLTTASAKEFIFTHGGYKALEKGKIDSVSAALILESWMENFYQ

Sequences:

>Translated_145_residues
MTEPLKSPSNLLGFDFGTKSIGVATGQMITATAQPLSAIKANDGIPNWDIVEKVIRDWMPDLIVVGLPLNMDGSEQPITQ
RAKKFANRLNGRFGVKVALQDERLTTASAKEFIFTHGGYKALEKGKIDSVSAALILESWMENFYQ
>Mature_144_residues
TEPLKSPSNLLGFDFGTKSIGVATGQMITATAQPLSAIKANDGIPNWDIVEKVIRDWMPDLIVVGLPLNMDGSEQPITQR
AKKFANRLNGRFGVKVALQDERLTTASAKEFIFTHGGYKALEKGKIDSVSAALILESWMENFYQ

Specific function: Could be a nuclease that resolves Holliday junction intermediates in genetic recombination [H]

COG id: COG0816

COG function: function code L; Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis)

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yqgF HJR family [H]

Homologues:

Organism=Escherichia coli, GI1789318, Length=135, Percent_Identity=64.4444444444444, Blast_Score=194, Evalue=1e-51,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR012337 [H]

Pfam domain/function: PF03652 UPF0081 [H]

EC number: NA

Molecular weight: Translated: 15930; Mature: 15798

Theoretical pI: Translated: 7.53; Mature: 7.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTEPLKSPSNLLGFDFGTKSIGVATGQMITATAQPLSAIKANDGIPNWDIVEKVIRDWMP
CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHCCCCCCCHHHHHHHHHHHCC
DLIVVGLPLNMDGSEQPITQRAKKFANRLNGRFGVKVALQDERLTTASAKEFIFTHGGYK
CEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHEEECCCHH
ALEKGKIDSVSAALILESWMENFYQ
HHHCCCCCHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TEPLKSPSNLLGFDFGTKSIGVATGQMITATAQPLSAIKANDGIPNWDIVEKVIRDWMP
CCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHCCCCCCCHHHHHHHHHHHCC
DLIVVGLPLNMDGSEQPITQRAKKFANRLNGRFGVKVALQDERLTTASAKEFIFTHGGYK
CEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHEEECCCHH
ALEKGKIDSVSAALILESWMENFYQ
HHHCCCCCHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA