Click here to switch to the map view.

The map label for this gene is yfaE [H]

Identifier: 119944865

GI number: 119944865

Start: 1384945

End: 1385196

Strand: Reverse

Name: yfaE [H]

Synonym: Ping_1108

Alternate gene names: 119944865

Gene position: 1385196-1384945 (Counterclockwise)

Preceding gene: 119944866

Following gene: 119944864

Centisome position: 30.38

GC content: 40.48

Gene sequence:

>252_bases
ATGAGTAAAAAAATAACCGTTAACGGGATTGAATATCCACTCGATACCAAAAAAACATTGCTTGAGAATTTGGAAGCTCA
AGCAATTCATCAGGAATATCATTGCCGTGATGGCCATTGTGGTGTTTGCCGCTGCAGATTAATTGGCGGCAAAGTTGACT
ATATAAACTACCCAATGGCCTATCTTCGTGATGGCGAAGTGTTAACCTGCTGCACAAAATCCCAGCAGGATATTATCCTG
GAAACCTATTAA

Upstream 100 bases:

>100_bases
TGCTCCGCAAGAGACAGAAATCAGTTCCTATCTGGTAGGGCAAATTGACAGTAAAGTTGACAGTGAAGATCTCAGTACCT
TTGAGTTATAAACAGCCATT

Downstream 100 bases:

>100_bases
CCTCATTAATAGTGATAAAGCACCTATTTTGACTCAAAGTTGACAGGATAATTTTCACCAACTTATGGGTCTCTCCCCTT
CAGTAATATGACTTTTCATC

Product: ferredoxin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 83; Mature: 82

Protein sequence:

>83_residues
MSKKITVNGIEYPLDTKKTLLENLEAQAIHQEYHCRDGHCGVCRCRLIGGKVDYINYPMAYLRDGEVLTCCTKSQQDIIL
ETY

Sequences:

>Translated_83_residues
MSKKITVNGIEYPLDTKKTLLENLEAQAIHQEYHCRDGHCGVCRCRLIGGKVDYINYPMAYLRDGEVLTCCTKSQQDIIL
ETY
>Mature_82_residues
SKKITVNGIEYPLDTKKTLLENLEAQAIHQEYHCRDGHCGVCRCRLIGGKVDYINYPMAYLRDGEVLTCCTKSQQDIILE
TY

Specific function: Unknown

COG id: COG0633

COG function: function code C; Ferredoxin

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 2Fe-2S ferredoxin-type domain [H]

Homologues:

Organism=Escherichia coli, GI1788568, Length=67, Percent_Identity=44.7761194029851, Blast_Score=74, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006058
- InterPro:   IPR012675
- InterPro:   IPR001041 [H]

Pfam domain/function: PF00111 Fer2 [H]

EC number: NA

Molecular weight: Translated: 9513; Mature: 9382

Theoretical pI: Translated: 6.74; Mature: 6.74

Prosite motif: PS00197 2FE2S_FER_1 ; PS51085 2FE2S_FER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

7.2 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
9.6 %Cys+Met (Translated Protein)
7.3 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
8.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKKITVNGIEYPLDTKKTLLENLEAQAIHQEYHCRDGHCGVCRCRLIGGKVDYINYPMA
CCCEEEECCCCCCCCCHHHHHHCHHHHHHHHHCCCCCCCCCEEEEEEECCEEEEEECCHH
YLRDGEVLTCCTKSQQDIILETY
HCCCCCEEEEECCCCCCEEEEEC
>Mature Secondary Structure 
SKKITVNGIEYPLDTKKTLLENLEAQAIHQEYHCRDGHCGVCRCRLIGGKVDYINYPMA
CCEEEECCCCCCCCCHHHHHHCHHHHHHHHHCCCCCCCCCEEEEEEECCEEEEEECCHH
YLRDGEVLTCCTKSQQDIILETY
HCCCCCEEEEECCCCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]