| Definition | Psychromonas ingrahamii 37, complete genome. |
|---|---|
| Accession | NC_008709 |
| Length | 4,559,598 |
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The map label for this gene is lptD [H]
Identifier: 119944808
GI number: 119944808
Start: 1323042
End: 1325414
Strand: Reverse
Name: lptD [H]
Synonym: Ping_1050
Alternate gene names: 119944808
Gene position: 1325414-1323042 (Counterclockwise)
Preceding gene: 119944811
Following gene: 119944807
Centisome position: 29.07
GC content: 37.93
Gene sequence:
>2373_bases ATGTTAAAAATACTACCTTCATTACTCTTTTTCTTACCTTTATTTGCAAATGGAGCGGAAGAACCTGCAGAATCTGTGCC TGAAAAAGAAAGCACACAACAATATGCTGTTACCAATAATACGTCAACTACTGAAGAACTACCTGCAGGTCAAGAACGTG ATACGAAACATTTTTTCCGTCAGTGTTATATACATGTTCCACCTAGAGTAGATGATCCTAATACTCTGCCTGTTGAACAA CAACCTATTAATATTGATGCGCAGAAATTATATGCGATTCCAAGTAAGTTGGTTTATGAGGAGGATGTTAATCTCACCCA GGGGAATAAAAATCTAAGCGCTGATAAATTAACCTATTATCCTGAACAGGAAAAGATCATTGCAGAAGGTAATGTGAATT TTAATGATGGCCAAGTGACCTTATTTGCAGACGTTATCGACAGGCAATTAACCAGTAATAAAACATCTTTATATCAGGCA GATTATCAGTTTCACGGTCGGGGAGGGCGTGGGGATGCAGATAAAATTTATGATAACGGTGACAATCTGTATGAGCTGAA GAACTCCTCCTATAGCGCCTGCCCCCCTGGAGATAATACCTGGTCGATTGATTCAACGACACTTTATATCGACAATAAGG CAGACACTGCCAGTGCTTATAACGCGATACTCAAAATAAAAGACATCCCGGTTTTTTACTTGCCTTATATTACTTACCCT ATTTCGGATAAACGTAAAACAGGTCTTTTATTTCCAAGTTTTGAATTTGCAAGTTCCAACGGTTTCACCCTTAGCCAACC CTTGTACCTCAATATTTCAGAAAATATGGACGCCACCATTACGCCGACCTATATGCAGAATCGAGGCACTCAAGTTGCGG GTCAATATCGTTATCTGCTCGATGCCGGCAGCGGTAAAATACAAGGCGAATATTTAGCCGATGATAAAATTTACAACGAA AGCCGTTATCTATACCATTGGGATCATGCGCTGAGCTTTGCTAGTAACTGGCAGTTTAATCTAAATTATAATCATGTCAG TGATGATTATTACTTTACGGATATTGCGACAGAGTATGGTTCGCGTAGTGCTAACCAGTTATTACAGACGGCCAGTTTAA AATATAATCAAAATAATTGGAGCAGTGAATTAGAGGTCAGAAGTTTCCAAATATTGGGTAACGGGGACACACCCTACGAA GTGGTGCCAAAACTTTCATTCAATGCTTATCAACCCCTTAACTTTCATAGTTTACAATTAGACTGGCACTCAGAAATTTC AAAATTTAACCACAGCGATACTGACGTTTATACCGGTACCCGACTCCATTTAGAACCTAAACTGTCGCTACCCTTGTATT ACAACTCTCTGTTTGTTAATACTGAATTTAAATATATGCTTAGCTTTTATCAGCAAGATTTAAGCAATGCGACTAAATAT TCGAGGTATGATGAATTAAGCAAAACGGCAACCCGTTACCTGCCCTCTTTTAAAATACATTCCGGGGTTAATTTTGAACG TACATTATCAATATTGAATAACAAGTATCGGCAAACGCTGGTACCGCAAATTCAATATTTATACGTTCCTTATCAGGATC AATCGGCCATCGGTATTTATGATAGTACCGCGATGCAGGTCGATTATTACGGTTTATTCCGTGATAATCGATTTTCAGGA TATGACAGAATTGCAGATGCTAATCAGATAACCTTTGGTGTTTCCAGTAGCTTGATTAACCCGCAGGGGCAAAAGAAAGT ACGTTTAGCGATTGGACAGAATTATTATTTTTCTCCTTCGCAAATCTATGTACCAGATTACAGCGAGGATAATAACAAGA GTAATACCGCGAGTCGCTCTTCACTTATTAGTGCGTTAGATATTAATTTTGAAAATGATTATTTTTTCCATGCGGGATTA GCAGTGGATTCAAATAAAGGAAAACTTAAAAGCTCCAATTTTACTCTGGAGAAACGTTGGGCCAATAATACCTTTGCGCA GTTAAATTATCGTTATTATGCAAATCCGGAAGATGAAGCCTGGGACATAAAAATTAATCAGCTGGGGACTAAAGTCAATT GGGCAATGAATTCACAATGGACCTCTTATCTCAGTTACTATTATGACGTGGATTACAAACACGCCTACGAGAGTATTGTT GGCTTAAAATATCAATCATGCTGCTGGGCAATCAACTTATCCTACGATAGCTATATGCAAGCATATTATGGTTCAGAGGA TTCAATAAAAGAAAGTTATGAAACCGAGAACAATTTCAAACTAAATTTTGAACTGACCGGATTAGGTGGTGTTGGATTTA GCTCTGGTAATCAAAGTTTATTTGATTACGGTCGTCCTTTTTACTTACAATAA
Upstream 100 bases:
>100_bases TGGAGCTCTGATAAGTTTGTTCTATTATAACCAGATCTATTTTATTTTATTTTATTTTAGCTTAGCGTTTTCAATTTCTA AGCATATTTGTGAGTTACTC
Downstream 100 bases:
>100_bases TGGAAAAAAAATGAAAGTTATCAAGAATATTCTCCTGCCTTTACTTTTTGCGTCTTTGGCCGCAACGCAGGTGTTTGCGG AAAAGATACCGTTAGACAAA
Product: organic solvent tolerance protein
Products: NA
Alternate protein names: Organic solvent tolerance protein [H]
Number of amino acids: Translated: 790; Mature: 790
Protein sequence:
>790_residues MLKILPSLLFFLPLFANGAEEPAESVPEKESTQQYAVTNNTSTTEELPAGQERDTKHFFRQCYIHVPPRVDDPNTLPVEQ QPINIDAQKLYAIPSKLVYEEDVNLTQGNKNLSADKLTYYPEQEKIIAEGNVNFNDGQVTLFADVIDRQLTSNKTSLYQA DYQFHGRGGRGDADKIYDNGDNLYELKNSSYSACPPGDNTWSIDSTTLYIDNKADTASAYNAILKIKDIPVFYLPYITYP ISDKRKTGLLFPSFEFASSNGFTLSQPLYLNISENMDATITPTYMQNRGTQVAGQYRYLLDAGSGKIQGEYLADDKIYNE SRYLYHWDHALSFASNWQFNLNYNHVSDDYYFTDIATEYGSRSANQLLQTASLKYNQNNWSSELEVRSFQILGNGDTPYE VVPKLSFNAYQPLNFHSLQLDWHSEISKFNHSDTDVYTGTRLHLEPKLSLPLYYNSLFVNTEFKYMLSFYQQDLSNATKY SRYDELSKTATRYLPSFKIHSGVNFERTLSILNNKYRQTLVPQIQYLYVPYQDQSAIGIYDSTAMQVDYYGLFRDNRFSG YDRIADANQITFGVSSSLINPQGQKKVRLAIGQNYYFSPSQIYVPDYSEDNNKSNTASRSSLISALDINFENDYFFHAGL AVDSNKGKLKSSNFTLEKRWANNTFAQLNYRYYANPEDEAWDIKINQLGTKVNWAMNSQWTSYLSYYYDVDYKHAYESIV GLKYQSCCWAINLSYDSYMQAYYGSEDSIKESYETENNFKLNFELTGLGGVGFSSGNQSLFDYGRPFYLQ
Sequences:
>Translated_790_residues MLKILPSLLFFLPLFANGAEEPAESVPEKESTQQYAVTNNTSTTEELPAGQERDTKHFFRQCYIHVPPRVDDPNTLPVEQ QPINIDAQKLYAIPSKLVYEEDVNLTQGNKNLSADKLTYYPEQEKIIAEGNVNFNDGQVTLFADVIDRQLTSNKTSLYQA DYQFHGRGGRGDADKIYDNGDNLYELKNSSYSACPPGDNTWSIDSTTLYIDNKADTASAYNAILKIKDIPVFYLPYITYP ISDKRKTGLLFPSFEFASSNGFTLSQPLYLNISENMDATITPTYMQNRGTQVAGQYRYLLDAGSGKIQGEYLADDKIYNE SRYLYHWDHALSFASNWQFNLNYNHVSDDYYFTDIATEYGSRSANQLLQTASLKYNQNNWSSELEVRSFQILGNGDTPYE VVPKLSFNAYQPLNFHSLQLDWHSEISKFNHSDTDVYTGTRLHLEPKLSLPLYYNSLFVNTEFKYMLSFYQQDLSNATKY SRYDELSKTATRYLPSFKIHSGVNFERTLSILNNKYRQTLVPQIQYLYVPYQDQSAIGIYDSTAMQVDYYGLFRDNRFSG YDRIADANQITFGVSSSLINPQGQKKVRLAIGQNYYFSPSQIYVPDYSEDNNKSNTASRSSLISALDINFENDYFFHAGL AVDSNKGKLKSSNFTLEKRWANNTFAQLNYRYYANPEDEAWDIKINQLGTKVNWAMNSQWTSYLSYYYDVDYKHAYESIV GLKYQSCCWAINLSYDSYMQAYYGSEDSIKESYETENNFKLNFELTGLGGVGFSSGNQSLFDYGRPFYLQ >Mature_790_residues MLKILPSLLFFLPLFANGAEEPAESVPEKESTQQYAVTNNTSTTEELPAGQERDTKHFFRQCYIHVPPRVDDPNTLPVEQ QPINIDAQKLYAIPSKLVYEEDVNLTQGNKNLSADKLTYYPEQEKIIAEGNVNFNDGQVTLFADVIDRQLTSNKTSLYQA DYQFHGRGGRGDADKIYDNGDNLYELKNSSYSACPPGDNTWSIDSTTLYIDNKADTASAYNAILKIKDIPVFYLPYITYP ISDKRKTGLLFPSFEFASSNGFTLSQPLYLNISENMDATITPTYMQNRGTQVAGQYRYLLDAGSGKIQGEYLADDKIYNE SRYLYHWDHALSFASNWQFNLNYNHVSDDYYFTDIATEYGSRSANQLLQTASLKYNQNNWSSELEVRSFQILGNGDTPYE VVPKLSFNAYQPLNFHSLQLDWHSEISKFNHSDTDVYTGTRLHLEPKLSLPLYYNSLFVNTEFKYMLSFYQQDLSNATKY SRYDELSKTATRYLPSFKIHSGVNFERTLSILNNKYRQTLVPQIQYLYVPYQDQSAIGIYDSTAMQVDYYGLFRDNRFSG YDRIADANQITFGVSSSLINPQGQKKVRLAIGQNYYFSPSQIYVPDYSEDNNKSNTASRSSLISALDINFENDYFFHAGL AVDSNKGKLKSSNFTLEKRWANNTFAQLNYRYYANPEDEAWDIKINQLGTKVNWAMNSQWTSYLSYYYDVDYKHAYESIV GLKYQSCCWAINLSYDSYMQAYYGSEDSIKESYETENNFKLNFELTGLGGVGFSSGNQSLFDYGRPFYLQ
Specific function: Involved in the assembly of LPS in the outer leaflet of the outer membrane. Determines N-hexane tolerance and is involved in outer membrane permeability. Essential for envelope biogenesis [H]
COG id: COG1452
COG function: function code M; Organic solvent tolerance protein OstA
Gene ontology:
Cell location: Cell outer membrane [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the lptD family [H]
Homologues:
Organism=Escherichia coli, GI1786239, Length=763, Percent_Identity=34.2070773263434, Blast_Score=412, Evalue=1e-116,
Paralogues:
None
Copy number: 60 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020889 - InterPro: IPR005653 - InterPro: IPR007543 [H]
Pfam domain/function: PF03968 OstA; PF04453 OstA_C [H]
EC number: NA
Molecular weight: Translated: 90783; Mature: 90783
Theoretical pI: Translated: 4.77; Mature: 4.77
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 1.4 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLKILPSLLFFLPLFANGAEEPAESVPEKESTQQYAVTNNTSTTEELPAGQERDTKHFFR CHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCEEEEECCCCCHHHCCCCCCCHHHHHHH QCYIHVPPRVDDPNTLPVEQQPINIDAQKLYAIPSKLVYEEDVNLTQGNKNLSADKLTYY EEEEECCCCCCCCCCCCCCCCCCCCCHHHHEECCHHEEEECCCCEECCCCCCCCCCEEEC PEQEKIIAEGNVNFNDGQVTLFADVIDRQLTSNKTSLYQADYQFHGRGGRGDADKIYDNG CCCCEEEEECCCEECCCEEEEEHHHHHHHHHCCCCEEEEECEEEECCCCCCCCHHHCCCC DNLYELKNSSYSACPPGDNTWSIDSTTLYIDNKADTASAYNAILKIKDIPVFYLPYITYP CCEEEECCCCCCCCCCCCCEEEECCEEEEEECCCCCHHHHEEEEEEECCCEEEEEEEEEC ISDKRKTGLLFPSFEFASSNGFTLSQPLYLNISENMDATITPTYMQNRGTQVAGQYRYLL CCCCCCCCEEECCCCCCCCCCCEECCCEEEEECCCCCCEECCHHHHCCCCEECCEEEEEE DAGSGKIQGEYLADDKIYNESRYLYHWDHALSFASNWQFNLNYNHVSDDYYFTDIATEYG ECCCCCEEEEEECCCEEECCCEEEEEEHHHHHHHCCEEEEEEECEECCCEEEEEHHHHHC SRSANQLLQTASLKYNQNNWSSELEVRSFQILGNGDTPYEVVPKLSFNAYQPLNFHSLQL CCCHHHHHHHHHEEECCCCCCCEEEEEEEEEEECCCCCCEEEECCCCCCCCCCCEEEEEE DWHSEISKFNHSDTDVYTGTRLHLEPKLSLPLYYNSLFVNTEFKYMLSFYQQDLSNATKY EHHHHHHHCCCCCCCEECCEEEEECCCCCCEEEEEEEEEECHHHHHHHHHHHHHHHHHHH SRYDELSKTATRYLPSFKIHSGVNFERTLSILNNKYRQTLVPQIQYLYVPYQDQSAIGIY HHHHHHHHHHHHHCCCEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCEEEEE DSTAMQVDYYGLFRDNRFSGYDRIADANQITFGVSSSLINPQGQKKVRLAIGQNYYFSPS CCCEEEEEEEEEEECCCCCCCHHCCCCCEEEEECCCCCCCCCCCCEEEEEECCCEEECCC QIYVPDYSEDNNKSNTASRSSLISALDINFENDYFFHAGLAVDSNKGKLKSSNFTLEKRW EEECCCCCCCCCCCCCHHHHHEEEEEEECCCCCEEEEEEEEEECCCCCEECCCCEEEEEC ANNTFAQLNYRYYANPEDEAWDIKINQLGTKVNWAMNSQWTSYLSYYYDVDYKHAYESIV CCCCEEEEEEEEECCCCCCEEEEEEECCCCEEEEEECCHHHHHHHEEEECCHHHHHHHHH GLKYQSCCWAINLSYDSYMQAYYGSEDSIKESYETENNFKLNFELTGLGGVGFSSGNQSL CCEECCEEEEEECCHHHHHHHHCCCCHHHHHHHCCCCCEEEEEEEEEECCCCCCCCCCCH FDYGRPFYLQ HHCCCCEECC >Mature Secondary Structure MLKILPSLLFFLPLFANGAEEPAESVPEKESTQQYAVTNNTSTTEELPAGQERDTKHFFR CHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCEEEEECCCCCHHHCCCCCCCHHHHHHH QCYIHVPPRVDDPNTLPVEQQPINIDAQKLYAIPSKLVYEEDVNLTQGNKNLSADKLTYY EEEEECCCCCCCCCCCCCCCCCCCCCHHHHEECCHHEEEECCCCEECCCCCCCCCCEEEC PEQEKIIAEGNVNFNDGQVTLFADVIDRQLTSNKTSLYQADYQFHGRGGRGDADKIYDNG CCCCEEEEECCCEECCCEEEEEHHHHHHHHHCCCCEEEEECEEEECCCCCCCCHHHCCCC DNLYELKNSSYSACPPGDNTWSIDSTTLYIDNKADTASAYNAILKIKDIPVFYLPYITYP CCEEEECCCCCCCCCCCCCEEEECCEEEEEECCCCCHHHHEEEEEEECCCEEEEEEEEEC ISDKRKTGLLFPSFEFASSNGFTLSQPLYLNISENMDATITPTYMQNRGTQVAGQYRYLL CCCCCCCCEEECCCCCCCCCCCEECCCEEEEECCCCCCEECCHHHHCCCCEECCEEEEEE DAGSGKIQGEYLADDKIYNESRYLYHWDHALSFASNWQFNLNYNHVSDDYYFTDIATEYG ECCCCCEEEEEECCCEEECCCEEEEEEHHHHHHHCCEEEEEEECEECCCEEEEEHHHHHC SRSANQLLQTASLKYNQNNWSSELEVRSFQILGNGDTPYEVVPKLSFNAYQPLNFHSLQL CCCHHHHHHHHHEEECCCCCCCEEEEEEEEEEECCCCCCEEEECCCCCCCCCCCEEEEEE DWHSEISKFNHSDTDVYTGTRLHLEPKLSLPLYYNSLFVNTEFKYMLSFYQQDLSNATKY EHHHHHHHCCCCCCCEECCEEEEECCCCCCEEEEEEEEEECHHHHHHHHHHHHHHHHHHH SRYDELSKTATRYLPSFKIHSGVNFERTLSILNNKYRQTLVPQIQYLYVPYQDQSAIGIY HHHHHHHHHHHHHCCCEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCEEEEE DSTAMQVDYYGLFRDNRFSGYDRIADANQITFGVSSSLINPQGQKKVRLAIGQNYYFSPS CCCEEEEEEEEEEECCCCCCCHHCCCCCEEEEECCCCCCCCCCCCEEEEEECCCEEECCC QIYVPDYSEDNNKSNTASRSSLISALDINFENDYFFHAGLAVDSNKGKLKSSNFTLEKRW EEECCCCCCCCCCCCCHHHHHEEEEEEECCCCCEEEEEEEEEECCCCCEECCCCEEEEEC ANNTFAQLNYRYYANPEDEAWDIKINQLGTKVNWAMNSQWTSYLSYYYDVDYKHAYESIV CCCCEEEEEEEEECCCCCCEEEEEEECCCCEEEEEECCHHHHHHHEEEECCHHHHHHHHH GLKYQSCCWAINLSYDSYMQAYYGSEDSIKESYETENNFKLNFELTGLGGVGFSSGNQSL CCEECCEEEEEECCHHHHHHHHCCCCHHHHHHHCCCCCEEEEEEEEEECCCCCCCCCCCH FDYGRPFYLQ HHCCCCEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 12368813 [H]