Click here to switch to the map view.

The map label for this gene is ycfD [H]

Identifier: 119944720

GI number: 119944720

Start: 1205472

End: 1206599

Strand: Reverse

Name: ycfD [H]

Synonym: Ping_0960

Alternate gene names: 119944720

Gene position: 1206599-1205472 (Counterclockwise)

Preceding gene: 119944721

Following gene: 119944713

Centisome position: 26.46

GC content: 41.05

Gene sequence:

>1128_bases
ATGTTCGAACTTAATTTAGATATTAACGATTTTCTTGACACCTACTGGCAGAAAAAACCAACCGTTATCAAACAAGGTTT
TGTTGATTTTGAAGATCCGATTATGCCCGATGAAATGGCCGGATTAGCAATGGAAGAAGAGCTTGAGAGCCGCCTTATTT
ATCAAGAGGATGGTGAATGGCAAGCACTGAGCGGTCCTTTTACAAGCTTTGAAAGATTGGAAAATGATGGTGCAACATTA
TTAGTACAAGCAGTGGATCACTGGCATCCCGATGCACAGGAGTTAATACGACCTTTCCGCTTTTTACCTAACTGGCGGAT
TGATGATCTAATGATCAGCTACTCCACGCCAAAAGGTGGAGTAGGCCCACATATTGATAATTATGATGTATTTATTATTC
AAGGCCTTGGAAAACGCCATTGGCGGGTTGGTGATAAAGGAGCATTACCAGAATTTGCTGCCCATGATGCACTTAAACAT
TGTGAGTCCTTTGATGCCATTATTGATGTCGAACTTGAACCGGGTGATATTCTGTACATTCCCGCCGGTTATCCACATGA
AGGTTATTCGATTGAAACATCACTTAATTACAGCATCGGATTTCGTGCCCCTGATCAAAATGATCTATTAAGCAGTTTTA
CCGATTACTGTATCGATACGAATCCAGCACCAGAACGTTATGCAGACAAGGAAATGTTATTACGTGAAAAGCCGGGGCAA
ATTGAAACTCCCGAGCTTAACGAATTACACCGTATCATGTTAGCCAATTGTGCAACGCCAGAAATGCTTATGCCTTGGTT
TGGCCGTATGATTAGCGAAGCTAAACATGATCTTGATATAGCCGAACCCGAGCAACCTCATACGGCACAATCTATATTAG
AGCAGCTGGAAGAGGGAGCACAATTTGTAAGGTTAGGTGGATTACACGCGGTCTACTTTGAACAAGCCCCGGAATTACTG
TTTATTAATGGAGAGCAATTTAATTGTGAAGGTTTTACCGAGTTAGGGCATCATCTTTGCGATCAAGATGAGGTCGGTGG
TGAATTATATGATCTGTTAATTGAAAATAAAAATGCGCTAATACTATTTACTGATTTAGTGAATCAGGGTTACTGGTATG
CAGCTTAA

Upstream 100 bases:

>100_bases
TGATTAAATGATAAGGCAGCCTGAGGTTGCCTTTTTTGTTTATTATCTACTATCCCCAAAGCATCATCCCGGTGAGCTGC
AAATTTTTTAACGAGGTAAT

Downstream 100 bases:

>100_bases
GTACACTTAGCTTTGAATAATTTACAATATTTTTAAAATCAATATATATTAATAAGCAGGGCTATCCCCTGCTTATTAAT
AGATTCAATTCAAATATAAA

Product: cupin 4 family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 375; Mature: 375

Protein sequence:

>375_residues
MFELNLDINDFLDTYWQKKPTVIKQGFVDFEDPIMPDEMAGLAMEEELESRLIYQEDGEWQALSGPFTSFERLENDGATL
LVQAVDHWHPDAQELIRPFRFLPNWRIDDLMISYSTPKGGVGPHIDNYDVFIIQGLGKRHWRVGDKGALPEFAAHDALKH
CESFDAIIDVELEPGDILYIPAGYPHEGYSIETSLNYSIGFRAPDQNDLLSSFTDYCIDTNPAPERYADKEMLLREKPGQ
IETPELNELHRIMLANCATPEMLMPWFGRMISEAKHDLDIAEPEQPHTAQSILEQLEEGAQFVRLGGLHAVYFEQAPELL
FINGEQFNCEGFTELGHHLCDQDEVGGELYDLLIENKNALILFTDLVNQGYWYAA

Sequences:

>Translated_375_residues
MFELNLDINDFLDTYWQKKPTVIKQGFVDFEDPIMPDEMAGLAMEEELESRLIYQEDGEWQALSGPFTSFERLENDGATL
LVQAVDHWHPDAQELIRPFRFLPNWRIDDLMISYSTPKGGVGPHIDNYDVFIIQGLGKRHWRVGDKGALPEFAAHDALKH
CESFDAIIDVELEPGDILYIPAGYPHEGYSIETSLNYSIGFRAPDQNDLLSSFTDYCIDTNPAPERYADKEMLLREKPGQ
IETPELNELHRIMLANCATPEMLMPWFGRMISEAKHDLDIAEPEQPHTAQSILEQLEEGAQFVRLGGLHAVYFEQAPELL
FINGEQFNCEGFTELGHHLCDQDEVGGELYDLLIENKNALILFTDLVNQGYWYAA
>Mature_375_residues
MFELNLDINDFLDTYWQKKPTVIKQGFVDFEDPIMPDEMAGLAMEEELESRLIYQEDGEWQALSGPFTSFERLENDGATL
LVQAVDHWHPDAQELIRPFRFLPNWRIDDLMISYSTPKGGVGPHIDNYDVFIIQGLGKRHWRVGDKGALPEFAAHDALKH
CESFDAIIDVELEPGDILYIPAGYPHEGYSIETSLNYSIGFRAPDQNDLLSSFTDYCIDTNPAPERYADKEMLLREKPGQ
IETPELNELHRIMLANCATPEMLMPWFGRMISEAKHDLDIAEPEQPHTAQSILEQLEEGAQFVRLGGLHAVYFEQAPELL
FINGEQFNCEGFTELGHHLCDQDEVGGELYDLLIENKNALILFTDLVNQGYWYAA

Specific function: Unknown

COG id: COG2850

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 JmjC domain [H]

Homologues:

Organism=Escherichia coli, GI87081836, Length=372, Percent_Identity=46.2365591397849, Blast_Score=349, Evalue=1e-97,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013109
- InterPro:   IPR022777
- InterPro:   IPR014710
- InterPro:   IPR003347 [H]

Pfam domain/function: PF08007 Cupin_4 [H]

EC number: NA

Molecular weight: Translated: 42818; Mature: 42818

Theoretical pI: Translated: 4.08; Mature: 4.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFELNLDINDFLDTYWQKKPTVIKQGFVDFEDPIMPDEMAGLAMEEELESRLIYQEDGEW
CEEECCCHHHHHHHHHCCCCCHHHHCCCCCCCCCCCHHHHCCHHHHHHHHCCEEECCCCE
QALSGPFTSFERLENDGATLLVQAVDHWHPDAQELIRPFRFLPNWRIDDLMISYSTPKGG
EECCCCHHHHHHHCCCCCEEEEEEHHCCCCCHHHHHHHHHHCCCCCCCEEEEEECCCCCC
VGPHIDNYDVFIIQGLGKRHWRVGDKGALPEFAAHDALKHCESFDAIIDVELEPGDILYI
CCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCEEEE
PAGYPHEGYSIETSLNYSIGFRAPDQNDLLSSFTDYCIDTNPAPERYADKEMLLREKPGQ
CCCCCCCCEEEEEEEEEEEEECCCCHHHHHHHHHHHHCCCCCCCHHHCCHHHHHHCCCCC
IETPELNELHRIMLANCATPEMLMPWFGRMISEAKHDLDIAEPEQPHTAQSILEQLEEGA
CCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH
QFVRLGGLHAVYFEQAPELLFINGEQFNCEGFTELGHHLCDQDEVGGELYDLLIENKNAL
HEEHHCCEEEEEECCCCCEEEEECCEECCCCHHHHHHHHCCCHHCCHHHHHHHCCCCCEE
ILFTDLVNQGYWYAA
EEEEHHHHCCEEECC
>Mature Secondary Structure
MFELNLDINDFLDTYWQKKPTVIKQGFVDFEDPIMPDEMAGLAMEEELESRLIYQEDGEW
CEEECCCHHHHHHHHHCCCCCHHHHCCCCCCCCCCCHHHHCCHHHHHHHHCCEEECCCCE
QALSGPFTSFERLENDGATLLVQAVDHWHPDAQELIRPFRFLPNWRIDDLMISYSTPKGG
EECCCCHHHHHHHCCCCCEEEEEEHHCCCCCHHHHHHHHHHCCCCCCCEEEEEECCCCCC
VGPHIDNYDVFIIQGLGKRHWRVGDKGALPEFAAHDALKHCESFDAIIDVELEPGDILYI
CCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCEEEE
PAGYPHEGYSIETSLNYSIGFRAPDQNDLLSSFTDYCIDTNPAPERYADKEMLLREKPGQ
CCCCCCCCEEEEEEEEEEEEECCCCHHHHHHHHHHHHCCCCCCCHHHCCHHHHHHCCCCC
IETPELNELHRIMLANCATPEMLMPWFGRMISEAKHDLDIAEPEQPHTAQSILEQLEEGA
CCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH
QFVRLGGLHAVYFEQAPELLFINGEQFNCEGFTELGHHLCDQDEVGGELYDLLIENKNAL
HEEHHCCEEEEEECCCCCEEEEECCEECCCCHHHHHHHHCCCHHCCHHHHHHHCCCCCEE
ILFTDLVNQGYWYAA
EEEEHHHHCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503; 1729240 [H]