| Definition | Psychromonas ingrahamii 37, complete genome. |
|---|---|
| Accession | NC_008709 |
| Length | 4,559,598 |
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The map label for this gene is uvrA [H]
Identifier: 119944150
GI number: 119944150
Start: 472044
End: 474881
Strand: Reverse
Name: uvrA [H]
Synonym: Ping_0369
Alternate gene names: 119944150
Gene position: 474881-472044 (Counterclockwise)
Preceding gene: 119944154
Following gene: 119944149
Centisome position: 10.41
GC content: 43.27
Gene sequence:
>2838_bases ATGAACAGCATTGAAATTCGTGGCGCTAAAACTCATAATCTTAAAAATATCGATATCTCTATTCCACGCGATAAACTGAT TGTGGTCACCGGACTTTCGGGTTCCGGAAAATCATCTCTGGCTTTTGATACCCTATACGCGGAAGGACAGCGCCGTTATG TTGAATCCCTTTCGGCCTACGCACGCCAGTTTCTCTCCTTAATGGAAAAACCTGATGTTGAGCATATAGAAGGTTTATCA CCGGCGATCTCCATAGAGCAAAAATCAACCTCTCATAACCCGCGATCTACGGTCGGAACTATTACTGAAATTCACGATTA TCTGCGCCTTTTATTTGCGCGTATCGGTGATCCGCGCTGCCCGACACATAACGTTACCCTTAATGCACAAACCGTTAGTC AGATGGTGGATTCAATTTTAAGTAATCCAAGTGGCAGTAAAATGATGCTCCTTGCCCCAATTGTCAAAGAGCGTAAAGGC GAGCATGTTAAAACCTTTGCAAGTCTTGCTGCACAGGGATTTTTACGGGCGCGGATTGACGGGGAGATTTGTGACTTAAG CGATCCACCGGCATTAGAGTTACATAAAAAACACACTATTGAAGTGGTTGTGGATCGTTTTAAAGTGCGCGATGACTTAA AACAGCGCTTGGCTGAGTCCGTCGAAACAACCCTGAATTTAAGTAACGGCTCAGCGGTTGTCGCCTTTATGGATAACGAT CAACCGGAACAACTTTTTTCAGCTAACTTCGCCTGTCCGCATTGTGGTTACAGTATTGCAGAATTAGAGCCACGCATATT TTCCTTCAATAATCCAGCAGGTGCCTGTACAACCTGTGAAGGACTCGGCATCGAGCAATATTTTGATCCTGAGCTTGTGG TCAGCAATCCTTCATTAAGCTTAGCTGATGGGGCCATTGACGGCTGGAGCAGTAAATCTAATTATTATTTCCAGATGTTA CTCGCGGTTTGTGATCATTATGGATTTTCAGCTGAGATCCCTTTTCAGAATCTCAGTAAAAAACAGCAGCAAATTGTTTT ATCTGGCTCAGGCAAAGAGAAAATCTTATTTTCATACAGTAATGATAAAGGGGATATTGTCTCCCGCTTACATGTGTTTG AAGGTGTTATTCCAAATAGAACGCGTCGCTACCACGAAACAGAGTCCAGTGCGATGCGCGAGCACCTTGCTAAATATATG AACCGCCAGCCCTGCTCGAGCTGCCGGGGATCGCGTTTAAAAGAATCCTCGCGCCATGTCTTTATTAATGAGGTCAACCT GCCTTATATCTCGCAATTATCTATTGCAGATGCAGAATCTTTTTTTGCCGATATCAAACTGCAGGGACAAAAAGCGACAA TAGCAGAAAAAATTCTTAAAGAAATTTTAGAGCGTCTTAGTTTTTTAGTTAATGTTGGTCTTAATTACCTGAGTTTAGAA CGCAGTGCTGAAACTCTTTCCGGAGGGGAAGCGCAGCGTATTCGTCTTGCTAGCCAAATTGGCGCAGGGTTAATGGGGGT AATGTACGTCTTAGATGAGCCTTCTATAGGTTTGCATCAACGCGATAATGCGCGTTTATTGAAAACCTTAACGCATCTAC GCGACCTTGGAAATACCGTGATCGTCGTTGAACATGATGAAGAGGCCATTCGTCTGGCCGATCATATTATTGACATCGGC CCCGGCGCAGGTATCCATGGTGGTTTTGTTATCGCAGAAGGTAATTATAAAACAATTCTTAAAGCCAAAAACTCATTAAC TGCTGATTACCTCAGTGGCCGTAAGTCGATAGCCATTCCTTCAAAACGCACCGCGCTTAGCGATAAGTGGATAAAATTAA GCGGAGCAACGGGTAACAACTTAAAATCAGTCAATCTAGAAATACCAATTGGGGTATTAACTTGTATTACTGGTGTTTCC GGCTCAGGTAAATCAACCTTGATTAATGATACCTTGTATCCACTTGCACAAACCCGATTAAATAAAGCGACCATCCTTAA GGCTTCTCCCTATCAAAAGATAACCGGTCTTTCTCATTTAGATAAAGTGGTCGATATTAACCAGAGTCCGATAGGCCGGA CCCCACGTTCAAATCCAGCGACTTACACCGGTATCTTTACCCCTATTCGTGAACTGTTTGCCGCGACAGCTGAATCACGT GCGCGCGGTTATAAACCAGGCCGTTTTAGTTTTAATGTCAAGGGCGGACGCTGTGAAGCCTGCCAGGGTGATGGGGTCAT TAAAGTTGAAATGAACTTTCTGCCTGATGTTTATGTCCCTTGTGATATCTGTCAGGGTCAACGTTATAACCGCGAAACAT TAGCGGTTAAATATAAGGGCAAAAATATCCATGAAACCTTAGATATGACCGTTGAAGATGCTTTTAAGTTTTATCAACCC GTTCCCGTGATCGCGCGAAAATTACAAACATTAATGGATGTAGGCCTGTCCTATATCCGTTTAGGCCAAGCTGCAACCAC CCTTTCAGGTGGAGAGGCTCAGCGGGTAAAATTAGCCAAAGAGCTTTCCAAACGTGATACCGGTAAAACCCTGTATATTC TGGATGAGCCAACCACAGGTTTACACTTTCATGATATTGCCCAACTTTTAAAAGTCATCCAGGCTTTACGCGACCATGGT AATACTATTGTTATTATTGAGCATAATTTAGATGTGATTAAAACCGCAGATTGGATAGTTGATCTAGGCCCCGAAGGCGG TAATGGCGGCGGTGAAATTATCGCGGCAGGAACGCCGGAAGAAGTTATAAAAGTATCGGCCAGTTACACCGGACAGTTTT TAAAAGAAATGTTAAACAAAAAAATTATAAGTGCATAA
Upstream 100 bases:
>100_bases AGGTTACATATTATGACTAAACTGATTTTTCGTTGTTTATTAAGAATATGCAATAATAAACAGACTTCCAAATATTTTGT TATAAAACTAGAGAATCATC
Downstream 100 bases:
>100_bases CACCTGCGCATAACACCAGTGCATAGTTATAAATATTACAGCGATAAAAAGAGCCATTGAAAATGGATTTACAACAAAAA TTAACCTGTGTATTTATAAT
Product: excinuclease ABC, A subunit
Products: NA
Alternate protein names: UvrA protein; Excinuclease ABC subunit A [H]
Number of amino acids: Translated: 945; Mature: 945
Protein sequence:
>945_residues MNSIEIRGAKTHNLKNIDISIPRDKLIVVTGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQFLSLMEKPDVEHIEGLS PAISIEQKSTSHNPRSTVGTITEIHDYLRLLFARIGDPRCPTHNVTLNAQTVSQMVDSILSNPSGSKMMLLAPIVKERKG EHVKTFASLAAQGFLRARIDGEICDLSDPPALELHKKHTIEVVVDRFKVRDDLKQRLAESVETTLNLSNGSAVVAFMDND QPEQLFSANFACPHCGYSIAELEPRIFSFNNPAGACTTCEGLGIEQYFDPELVVSNPSLSLADGAIDGWSSKSNYYFQML LAVCDHYGFSAEIPFQNLSKKQQQIVLSGSGKEKILFSYSNDKGDIVSRLHVFEGVIPNRTRRYHETESSAMREHLAKYM NRQPCSSCRGSRLKESSRHVFINEVNLPYISQLSIADAESFFADIKLQGQKATIAEKILKEILERLSFLVNVGLNYLSLE RSAETLSGGEAQRIRLASQIGAGLMGVMYVLDEPSIGLHQRDNARLLKTLTHLRDLGNTVIVVEHDEEAIRLADHIIDIG PGAGIHGGFVIAEGNYKTILKAKNSLTADYLSGRKSIAIPSKRTALSDKWIKLSGATGNNLKSVNLEIPIGVLTCITGVS GSGKSTLINDTLYPLAQTRLNKATILKASPYQKITGLSHLDKVVDINQSPIGRTPRSNPATYTGIFTPIRELFAATAESR ARGYKPGRFSFNVKGGRCEACQGDGVIKVEMNFLPDVYVPCDICQGQRYNRETLAVKYKGKNIHETLDMTVEDAFKFYQP VPVIARKLQTLMDVGLSYIRLGQAATTLSGGEAQRVKLAKELSKRDTGKTLYILDEPTTGLHFHDIAQLLKVIQALRDHG NTIVIIEHNLDVIKTADWIVDLGPEGGNGGGEIIAAGTPEEVIKVSASYTGQFLKEMLNKKIISA
Sequences:
>Translated_945_residues MNSIEIRGAKTHNLKNIDISIPRDKLIVVTGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQFLSLMEKPDVEHIEGLS PAISIEQKSTSHNPRSTVGTITEIHDYLRLLFARIGDPRCPTHNVTLNAQTVSQMVDSILSNPSGSKMMLLAPIVKERKG EHVKTFASLAAQGFLRARIDGEICDLSDPPALELHKKHTIEVVVDRFKVRDDLKQRLAESVETTLNLSNGSAVVAFMDND QPEQLFSANFACPHCGYSIAELEPRIFSFNNPAGACTTCEGLGIEQYFDPELVVSNPSLSLADGAIDGWSSKSNYYFQML LAVCDHYGFSAEIPFQNLSKKQQQIVLSGSGKEKILFSYSNDKGDIVSRLHVFEGVIPNRTRRYHETESSAMREHLAKYM NRQPCSSCRGSRLKESSRHVFINEVNLPYISQLSIADAESFFADIKLQGQKATIAEKILKEILERLSFLVNVGLNYLSLE RSAETLSGGEAQRIRLASQIGAGLMGVMYVLDEPSIGLHQRDNARLLKTLTHLRDLGNTVIVVEHDEEAIRLADHIIDIG PGAGIHGGFVIAEGNYKTILKAKNSLTADYLSGRKSIAIPSKRTALSDKWIKLSGATGNNLKSVNLEIPIGVLTCITGVS GSGKSTLINDTLYPLAQTRLNKATILKASPYQKITGLSHLDKVVDINQSPIGRTPRSNPATYTGIFTPIRELFAATAESR ARGYKPGRFSFNVKGGRCEACQGDGVIKVEMNFLPDVYVPCDICQGQRYNRETLAVKYKGKNIHETLDMTVEDAFKFYQP VPVIARKLQTLMDVGLSYIRLGQAATTLSGGEAQRVKLAKELSKRDTGKTLYILDEPTTGLHFHDIAQLLKVIQALRDHG NTIVIIEHNLDVIKTADWIVDLGPEGGNGGGEIIAAGTPEEVIKVSASYTGQFLKEMLNKKIISA >Mature_945_residues MNSIEIRGAKTHNLKNIDISIPRDKLIVVTGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQFLSLMEKPDVEHIEGLS PAISIEQKSTSHNPRSTVGTITEIHDYLRLLFARIGDPRCPTHNVTLNAQTVSQMVDSILSNPSGSKMMLLAPIVKERKG EHVKTFASLAAQGFLRARIDGEICDLSDPPALELHKKHTIEVVVDRFKVRDDLKQRLAESVETTLNLSNGSAVVAFMDND QPEQLFSANFACPHCGYSIAELEPRIFSFNNPAGACTTCEGLGIEQYFDPELVVSNPSLSLADGAIDGWSSKSNYYFQML LAVCDHYGFSAEIPFQNLSKKQQQIVLSGSGKEKILFSYSNDKGDIVSRLHVFEGVIPNRTRRYHETESSAMREHLAKYM NRQPCSSCRGSRLKESSRHVFINEVNLPYISQLSIADAESFFADIKLQGQKATIAEKILKEILERLSFLVNVGLNYLSLE RSAETLSGGEAQRIRLASQIGAGLMGVMYVLDEPSIGLHQRDNARLLKTLTHLRDLGNTVIVVEHDEEAIRLADHIIDIG PGAGIHGGFVIAEGNYKTILKAKNSLTADYLSGRKSIAIPSKRTALSDKWIKLSGATGNNLKSVNLEIPIGVLTCITGVS GSGKSTLINDTLYPLAQTRLNKATILKASPYQKITGLSHLDKVVDINQSPIGRTPRSNPATYTGIFTPIRELFAATAESR ARGYKPGRFSFNVKGGRCEACQGDGVIKVEMNFLPDVYVPCDICQGQRYNRETLAVKYKGKNIHETLDMTVEDAFKFYQP VPVIARKLQTLMDVGLSYIRLGQAATTLSGGEAQRVKLAKELSKRDTGKTLYILDEPTTGLHFHDIAQLLKVIQALRDHG NTIVIIEHNLDVIKTADWIVDLGPEGGNGGGEIIAAGTPEEVIKVSASYTGQFLKEMLNKKIISA
Specific function: The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion h
COG id: COG0178
COG function: function code L; Excinuclease ATPase subunit
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 2 ABC transporter domains [H]
Homologues:
Organism=Escherichia coli, GI2367343, Length=940, Percent_Identity=73.7234042553192, Blast_Score=1440, Evalue=0.0,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR013815 - InterPro: IPR004602 [H]
Pfam domain/function: PF00005 ABC_tran [H]
EC number: NA
Molecular weight: Translated: 103851; Mature: 103851
Theoretical pI: Translated: 7.99; Mature: 7.99
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNSIEIRGAKTHNLKNIDISIPRDKLIVVTGLSGSGKSSLAFDTLYAEGQRRYVESLSAY CCCEEECCCCCCCCEEEEEECCCCCEEEEECCCCCCCCCEEHHHHHHHHHHHHHHHHHHH ARQFLSLMEKPDVEHIEGLSPAISIEQKSTSHNPRSTVGTITEIHDYLRLLFARIGDPRC HHHHHHHHCCCCHHHHCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCC PTHNVTLNAQTVSQMVDSILSNPSGSKMMLLAPIVKERKGEHVKTFASLAAQGFLRARID CCCEEEECHHHHHHHHHHHHCCCCCCEEEEEEHHHHHCCCCHHHHHHHHHHHHHHEEECC GEICDLSDPPALELHKKHTIEVVVDRFKVRDDLKQRLAESVETTLNLSNGSAVVAFMDND CCEECCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCEEEEECCCC QPEQLFSANFACPHCGYSIAELEPRIFSFNNPAGACTTCEGLGIEQYFDPELVVSNPSLS CHHHHHHCCCCCCCCCCCHHHCCCCEEECCCCCCCCCCCCCCCCHHHCCCEEEEECCCCE LADGAIDGWSSKSNYYFQMLLAVCDHYGFSAEIPFQNLSKKQQQIVLSGSGKEKILFSYS ECCCCCCCCCCCCHHHHHHHHHHHHCCCCEEECCHHHHCCHHHEEEEECCCCCEEEEEEC NDKGDIVSRLHVFEGVIPNRTRRYHETESSAMREHLAKYMNRQPCSSCRGSRLKESSRHV CCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCEE FINEVNLPYISQLSIADAESFFADIKLQGQKATIAEKILKEILERLSFLVNVGLNYLSLE EEEECCCCCEECEEHHHHHHHEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEHH RSAETLSGGEAQRIRLASQIGAGLMGVMYVLDEPSIGLHQRDNARLLKTLTHLRDLGNTV HHHHHHCCCCHHHHHHHHHHCCHHHHHHHEECCCCCCCCCCCCHHHHHHHHHHHHCCCEE IVVEHDEEAIRLADHIIDIGPGAGIHGGFVIAEGNYKTILKAKNSLTADYLSGRKSIAIP EEEECCHHHHHHHHHHEECCCCCCCCCCEEEECCCEEEEEECCCCCCHHHHCCCCEEECC SKRTALSDKWIKLSGATGNNLKSVNLEIPIGVLTCITGVSGSGKSTLINDTLYPLAQTRL CCCCCCCCCEEEEECCCCCCEEEEEEEECHHHHHHHHCCCCCCCCEEECCHHHHHHHHHC NKATILKASPYQKITGLSHLDKVVDINQSPIGRTPRSNPATYTGIFTPIRELFAATAESR CCEEEEECCCHHHHHCHHHHHHHHCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHH ARGYKPGRFSFNVKGGRCEACQGDGVIKVEMNFLPDVYVPCDICQGQRYNRETLAVKYKG HCCCCCCCEEEEECCCEECCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEECC KNIHETLDMTVEDAFKFYQPVPVIARKLQTLMDVGLSYIRLGQAATTLSGGEAQRVKLAK CCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCHHHHHHCCHHEECCCCCHHHHHHHH ELSKRDTGKTLYILDEPTTGLHFHDIAQLLKVIQALRDHGNTIVIIEHNLDVIKTADWIV HHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCEEEECCEEE DLGPEGGNGGGEIIAAGTPEEVIKVSASYTGQFLKEMLNKKIISA EECCCCCCCCCEEEECCCHHHHHEEHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MNSIEIRGAKTHNLKNIDISIPRDKLIVVTGLSGSGKSSLAFDTLYAEGQRRYVESLSAY CCCEEECCCCCCCCEEEEEECCCCCEEEEECCCCCCCCCEEHHHHHHHHHHHHHHHHHHH ARQFLSLMEKPDVEHIEGLSPAISIEQKSTSHNPRSTVGTITEIHDYLRLLFARIGDPRC HHHHHHHHCCCCHHHHCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCC PTHNVTLNAQTVSQMVDSILSNPSGSKMMLLAPIVKERKGEHVKTFASLAAQGFLRARID CCCEEEECHHHHHHHHHHHHCCCCCCEEEEEEHHHHHCCCCHHHHHHHHHHHHHHEEECC GEICDLSDPPALELHKKHTIEVVVDRFKVRDDLKQRLAESVETTLNLSNGSAVVAFMDND CCEECCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCEEEEECCCC QPEQLFSANFACPHCGYSIAELEPRIFSFNNPAGACTTCEGLGIEQYFDPELVVSNPSLS CHHHHHHCCCCCCCCCCCHHHCCCCEEECCCCCCCCCCCCCCCCHHHCCCEEEEECCCCE LADGAIDGWSSKSNYYFQMLLAVCDHYGFSAEIPFQNLSKKQQQIVLSGSGKEKILFSYS ECCCCCCCCCCCCHHHHHHHHHHHHCCCCEEECCHHHHCCHHHEEEEECCCCCEEEEEEC NDKGDIVSRLHVFEGVIPNRTRRYHETESSAMREHLAKYMNRQPCSSCRGSRLKESSRHV CCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCEE FINEVNLPYISQLSIADAESFFADIKLQGQKATIAEKILKEILERLSFLVNVGLNYLSLE EEEECCCCCEECEEHHHHHHHEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEHH RSAETLSGGEAQRIRLASQIGAGLMGVMYVLDEPSIGLHQRDNARLLKTLTHLRDLGNTV HHHHHHCCCCHHHHHHHHHHCCHHHHHHHEECCCCCCCCCCCCHHHHHHHHHHHHCCCEE IVVEHDEEAIRLADHIIDIGPGAGIHGGFVIAEGNYKTILKAKNSLTADYLSGRKSIAIP EEEECCHHHHHHHHHHEECCCCCCCCCCEEEECCCEEEEEECCCCCCHHHHCCCCEEECC SKRTALSDKWIKLSGATGNNLKSVNLEIPIGVLTCITGVSGSGKSTLINDTLYPLAQTRL CCCCCCCCCEEEEECCCCCCEEEEEEEECHHHHHHHHCCCCCCCCEEECCHHHHHHHHHC NKATILKASPYQKITGLSHLDKVVDINQSPIGRTPRSNPATYTGIFTPIRELFAATAESR CCEEEEECCCHHHHHCHHHHHHHHCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHH ARGYKPGRFSFNVKGGRCEACQGDGVIKVEMNFLPDVYVPCDICQGQRYNRETLAVKYKG HCCCCCCCEEEEECCCEECCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEECC KNIHETLDMTVEDAFKFYQPVPVIARKLQTLMDVGLSYIRLGQAATTLSGGEAQRVKLAK CCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCHHHHHHCCHHEECCCCCHHHHHHHH ELSKRDTGKTLYILDEPTTGLHFHDIAQLLKVIQALRDHGNTIVIIEHNLDVIKTADWIV HHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCEEEECCEEE DLGPEGGNGGGEIIAAGTPEEVIKVSASYTGQFLKEMLNKKIISA EECCCCCCCCCEEEECCCHHHHHEEHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: DNA [C]
Specific reaction: Protein + DNA = Protein-DNA [C]
General reaction: Hydrolase; Acting on ester bonds [C]
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 10952301 [H]