Click here to switch to the map view.

The map label for this gene is yedQ [H]

Identifier: 119944046

GI number: 119944046

Start: 339696

End: 341531

Strand: Reverse

Name: yedQ [H]

Synonym: Ping_0260

Alternate gene names: 119944046

Gene position: 341531-339696 (Counterclockwise)

Preceding gene: 119944052

Following gene: 119944044

Centisome position: 7.49

GC content: 37.36

Gene sequence:

>1836_bases
ATGCCTTATCATAAAAATTCTACAAAACCAGCCTATCGTACGTTAACATTCCTATTTACATCTTTGCTGGTTTTGTTATT
TTTCTTGCTGTCTACTCGCTTTTCTCTTGCTGAATCAACTATTAGCCTAAAGCAAGTGATGCAAGGACAAAGCACTGATT
TAAGTATTTATTATTTAGAAGACCCAGAAAAAAGTTATAACATTGATCAATTACAATCAGCCCCCTTATTCTCAAAATTT
CAGCCCCTGCCTAATGGAAAAAGTAGTTTTGGTATCAGTTCCTCAGACTACTGGCTTAAAATAATAGTGAGAAATACTGA
CGATACAGATTTGTTATGGTTACTAGAGATAGTTCATCAGCAATGGGATCATGTGAACTTATATATTAACGGAGAAAAAA
AATTTTATGCCGGCGATCATATCCCCTTTACACAACGTGCTTTTGCATCTGAAAACAATGTCTTTGAAATAACTACCGCT
GTAAAGGCTGAACAACAATTATTGATTCATTTTTCTTATGAACAAGCAGGCCAAGCTGAAACACAGATTCGACTATGGAC
AGTAAAAGAATATAGTCAGTATTATGCAAACCGATATTTTATTATTGGAGCCATGTTTGGTTTAGGCATAATACTGTTTT
TTTATAATCTATTTATTGGCTATTCCACTCGCTTGCCCCAATTTCTTTGGTATAGCGGATACATTATTAGCGCACTTTTA
GCTTTCTTGACTGATAAAGGATTTGGCTATCGCTACCTCTGGTCAAATTCAAACTGGTTTAGCGATTTTTCTCCTGTTTT
TTTCATTGCCTTAGTGATGATAATGGCCACTCAGTTTACCCGCTCATTTTTGAATACTGCAACTGAATCAGTGAATATCG
ACAGGCTACTACAATTAATATTTGTTGTAGCTGGACTTTCCATTTTTTTCAGCTTAATAGGTTATCGTGACTATGCCGTT
ATTTTAGGTCTTCTTAGCATGTTAACTTCTATTTTTTTCCCGGTTATCGGTTGGGTCATCTATTTAAAAGGCAGGTCATA
TGCCCGTTTTTATATTTTGGGATGGAGTATTTGGTCTTTGGGTATGATTTTGGCAGTATTACAGCATATCGGCATGATTC
CAGTAACGCTATACTCTGATTTATCCACTGGACTGTGTTTTTCTATTGAAGCAGCTCTTCTTTCCTTTGCCCTTGCAGAC
CGGTTTAACCAACTCAGGAACGAAAAAGAAGAAATTGAATTAATTCATATTGAGCATCTAAAAAACGATCAGCAACTACT
GGAGCAACTTGTCACCGAACGTACCGAAGAACTGGAGCAAGCAAAAGATCGAGCAGAGTTATTAGCACGAACCGATCCCC
TAACTAACATGTTAAATCGTCGCGCCTTTTTTGAGTGTGGTTCAGTAGAAATTAAACGTAGTTTACGCTATAAATCATCG
CTGGCTATTATGATGATCGATCTCGATCACTTCAAATCCATCAATGATAACTATGGTCATGCTGCTGGTGATAATGCTCT
GTTATCCGTTGCTAATACATTAAAAGCGATGATACGTAATGTGGATATCATTGGACGGATAGGAGGAGAAGAGTTTGCGG
TAATAATTCCCCATGCTGATCTGGAGATTGCAACTGAACTGGCGCAACGGCTTAGACTAGGCATCGAAAAAGTAGAGATA
ATTATTGATAACCAGCCGGTAAAGATCACCGCATGTTTTGGTGTCACTAGTATAGATATAAAAAGCGAATCATTAGATGA
AGCATTAAAAAGAGCCGATAAGGCACTTTATCTGGCAAAAGAAAATGGCCGAAACCGGGTTGAACAGCTTGCTTGA

Upstream 100 bases:

>100_bases
AATAGAAGGATGCTATGTTTAAGAAGATTTTAATTAAAATTTATCATTTTTTGCAATGGGTTGATTTGTCTTTTTTCATA
AAATAAGGAGTATTTATCTA

Downstream 100 bases:

>100_bases
TTAACAAGCTCTTTATTCCAAGTGATAATATCTTCGAAAAAATAAATACAATGGCTTAAATCCACTTATTATAATGGGTA
AATAAAAGCCACCAGCTGAT

Product: diguanylate cyclase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 611; Mature: 610

Protein sequence:

>611_residues
MPYHKNSTKPAYRTLTFLFTSLLVLLFFLLSTRFSLAESTISLKQVMQGQSTDLSIYYLEDPEKSYNIDQLQSAPLFSKF
QPLPNGKSSFGISSSDYWLKIIVRNTDDTDLLWLLEIVHQQWDHVNLYINGEKKFYAGDHIPFTQRAFASENNVFEITTA
VKAEQQLLIHFSYEQAGQAETQIRLWTVKEYSQYYANRYFIIGAMFGLGIILFFYNLFIGYSTRLPQFLWYSGYIISALL
AFLTDKGFGYRYLWSNSNWFSDFSPVFFIALVMIMATQFTRSFLNTATESVNIDRLLQLIFVVAGLSIFFSLIGYRDYAV
ILGLLSMLTSIFFPVIGWVIYLKGRSYARFYILGWSIWSLGMILAVLQHIGMIPVTLYSDLSTGLCFSIEAALLSFALAD
RFNQLRNEKEEIELIHIEHLKNDQQLLEQLVTERTEELEQAKDRAELLARTDPLTNMLNRRAFFECGSVEIKRSLRYKSS
LAIMMIDLDHFKSINDNYGHAAGDNALLSVANTLKAMIRNVDIIGRIGGEEFAVIIPHADLEIATELAQRLRLGIEKVEI
IIDNQPVKITACFGVTSIDIKSESLDEALKRADKALYLAKENGRNRVEQLA

Sequences:

>Translated_611_residues
MPYHKNSTKPAYRTLTFLFTSLLVLLFFLLSTRFSLAESTISLKQVMQGQSTDLSIYYLEDPEKSYNIDQLQSAPLFSKF
QPLPNGKSSFGISSSDYWLKIIVRNTDDTDLLWLLEIVHQQWDHVNLYINGEKKFYAGDHIPFTQRAFASENNVFEITTA
VKAEQQLLIHFSYEQAGQAETQIRLWTVKEYSQYYANRYFIIGAMFGLGIILFFYNLFIGYSTRLPQFLWYSGYIISALL
AFLTDKGFGYRYLWSNSNWFSDFSPVFFIALVMIMATQFTRSFLNTATESVNIDRLLQLIFVVAGLSIFFSLIGYRDYAV
ILGLLSMLTSIFFPVIGWVIYLKGRSYARFYILGWSIWSLGMILAVLQHIGMIPVTLYSDLSTGLCFSIEAALLSFALAD
RFNQLRNEKEEIELIHIEHLKNDQQLLEQLVTERTEELEQAKDRAELLARTDPLTNMLNRRAFFECGSVEIKRSLRYKSS
LAIMMIDLDHFKSINDNYGHAAGDNALLSVANTLKAMIRNVDIIGRIGGEEFAVIIPHADLEIATELAQRLRLGIEKVEI
IIDNQPVKITACFGVTSIDIKSESLDEALKRADKALYLAKENGRNRVEQLA
>Mature_610_residues
PYHKNSTKPAYRTLTFLFTSLLVLLFFLLSTRFSLAESTISLKQVMQGQSTDLSIYYLEDPEKSYNIDQLQSAPLFSKFQ
PLPNGKSSFGISSSDYWLKIIVRNTDDTDLLWLLEIVHQQWDHVNLYINGEKKFYAGDHIPFTQRAFASENNVFEITTAV
KAEQQLLIHFSYEQAGQAETQIRLWTVKEYSQYYANRYFIIGAMFGLGIILFFYNLFIGYSTRLPQFLWYSGYIISALLA
FLTDKGFGYRYLWSNSNWFSDFSPVFFIALVMIMATQFTRSFLNTATESVNIDRLLQLIFVVAGLSIFFSLIGYRDYAVI
LGLLSMLTSIFFPVIGWVIYLKGRSYARFYILGWSIWSLGMILAVLQHIGMIPVTLYSDLSTGLCFSIEAALLSFALADR
FNQLRNEKEEIELIHIEHLKNDQQLLEQLVTERTEELEQAKDRAELLARTDPLTNMLNRRAFFECGSVEIKRSLRYKSSL
AIMMIDLDHFKSINDNYGHAAGDNALLSVANTLKAMIRNVDIIGRIGGEEFAVIIPHADLEIATELAQRLRLGIEKVEII
IDNQPVKITACFGVTSIDIKSESLDEALKRADKALYLAKENGRNRVEQLA

Specific function: Involves in the regulation of cellulose production [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 GGDEF domain [H]

Homologues:

Organism=Escherichia coli, GI87082007, Length=158, Percent_Identity=41.7721518987342, Blast_Score=125, Evalue=7e-30,
Organism=Escherichia coli, GI1787262, Length=164, Percent_Identity=37.8048780487805, Blast_Score=120, Evalue=3e-28,
Organism=Escherichia coli, GI87081881, Length=171, Percent_Identity=38.5964912280702, Blast_Score=117, Evalue=2e-27,
Organism=Escherichia coli, GI1786584, Length=176, Percent_Identity=35.7954545454545, Blast_Score=112, Evalue=6e-26,
Organism=Escherichia coli, GI1788381, Length=182, Percent_Identity=32.967032967033, Blast_Score=103, Evalue=4e-23,
Organism=Escherichia coli, GI1787802, Length=177, Percent_Identity=30.5084745762712, Blast_Score=95, Evalue=2e-20,
Organism=Escherichia coli, GI145693134, Length=158, Percent_Identity=33.5443037974684, Blast_Score=92, Evalue=7e-20,
Organism=Escherichia coli, GI1788085, Length=162, Percent_Identity=32.7160493827161, Blast_Score=86, Evalue=5e-18,
Organism=Escherichia coli, GI87081977, Length=171, Percent_Identity=35.0877192982456, Blast_Score=86, Evalue=5e-18,
Organism=Escherichia coli, GI1787816, Length=156, Percent_Identity=33.3333333333333, Blast_Score=85, Evalue=1e-17,
Organism=Escherichia coli, GI87081974, Length=156, Percent_Identity=28.2051282051282, Blast_Score=76, Evalue=5e-15,
Organism=Escherichia coli, GI1787541, Length=179, Percent_Identity=30.7262569832402, Blast_Score=73, Evalue=7e-14,
Organism=Escherichia coli, GI87081921, Length=170, Percent_Identity=29.4117647058824, Blast_Score=65, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160 [H]

Pfam domain/function: PF00990 GGDEF [H]

EC number: NA

Molecular weight: Translated: 69970; Mature: 69838

Theoretical pI: Translated: 6.00; Mature: 6.00

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPYHKNSTKPAYRTLTFLFTSLLVLLFFLLSTRFSLAESTISLKQVMQGQSTDLSIYYLE
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEE
DPEKSYNIDQLQSAPLFSKFQPLPNGKSSFGISSSDYWLKIIVRNTDDTDLLWLLEIVHQ
CCCCCCCHHHHCCCCCHHHCCCCCCCCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHH
QWDHVNLYINGEKKFYAGDHIPFTQRAFASENNVFEITTAVKAEQQLLIHFSYEQAGQAE
CCCEEEEEEECCEEEECCCCCCCHHHHHCCCCCEEEEEEHHHCCCEEEEEEEHHHCCCCC
TQIRLWTVKEYSQYYANRYFIIGAMFGLGIILFFYNLFIGYSTRLPQFLWYSGYIISALL
CEEEEEEHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
AFLTDKGFGYRYLWSNSNWFSDFSPVFFIALVMIMATQFTRSFLNTATESVNIDRLLQLI
HHHHCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
FVVAGLSIFFSLIGYRDYAVILGLLSMLTSIFFPVIGWVIYLKGRSYARFYILGWSIWSL
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHEEECCCCEEEEEEEHHHHHHH
GMILAVLQHIGMIPVTLYSDLSTGLCFSIEAALLSFALADRFNQLRNEKEEIELIHIEHL
HHHHHHHHHCCCCEEHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHEEEEEHHHC
KNDQQLLEQLVTERTEELEQAKDRAELLARTDPLTNMLNRRAFFECGSVEIKRSLRYKSS
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHCC
LAIMMIDLDHFKSINDNYGHAAGDNALLSVANTLKAMIRNVDIIGRIGGEEFAVIIPHAD
EEEEEEEHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHEEECCCCCEEEEECCCC
LEIATELAQRLRLGIEKVEIIIDNQPVKITACFGVTSIDIKSESLDEALKRADKALYLAK
HHHHHHHHHHHHHCCEEEEEEECCCCEEEEEEECEEEEECCHHHHHHHHHHHHHEEEEEC
ENGRNRVEQLA
CCCCHHHHHCC
>Mature Secondary Structure 
PYHKNSTKPAYRTLTFLFTSLLVLLFFLLSTRFSLAESTISLKQVMQGQSTDLSIYYLE
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEE
DPEKSYNIDQLQSAPLFSKFQPLPNGKSSFGISSSDYWLKIIVRNTDDTDLLWLLEIVHQ
CCCCCCCHHHHCCCCCHHHCCCCCCCCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHH
QWDHVNLYINGEKKFYAGDHIPFTQRAFASENNVFEITTAVKAEQQLLIHFSYEQAGQAE
CCCEEEEEEECCEEEECCCCCCCHHHHHCCCCCEEEEEEHHHCCCEEEEEEEHHHCCCCC
TQIRLWTVKEYSQYYANRYFIIGAMFGLGIILFFYNLFIGYSTRLPQFLWYSGYIISALL
CEEEEEEHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
AFLTDKGFGYRYLWSNSNWFSDFSPVFFIALVMIMATQFTRSFLNTATESVNIDRLLQLI
HHHHCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
FVVAGLSIFFSLIGYRDYAVILGLLSMLTSIFFPVIGWVIYLKGRSYARFYILGWSIWSL
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHEEECCCCEEEEEEEHHHHHHH
GMILAVLQHIGMIPVTLYSDLSTGLCFSIEAALLSFALADRFNQLRNEKEEIELIHIEHL
HHHHHHHHHCCCCEEHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHEEEEEHHHC
KNDQQLLEQLVTERTEELEQAKDRAELLARTDPLTNMLNRRAFFECGSVEIKRSLRYKSS
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHCC
LAIMMIDLDHFKSINDNYGHAAGDNALLSVANTLKAMIRNVDIIGRIGGEEFAVIIPHAD
EEEEEEEHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHEEECCCCCEEEEECCCC
LEIATELAQRLRLGIEKVEIIIDNQPVKITACFGVTSIDIKSESLDEALKRADKALYLAK
HHHHHHHHHHHHHCCEEEEEEECCCCEEEEEEECEEEEECCHHHHHHHHHHHHHEEEEEC
ENGRNRVEQLA
CCCCHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]