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The map label for this gene is ybjD [H]

Identifier: 119943988

GI number: 119943988

Start: 253191

End: 254867

Strand: Direct

Name: ybjD [H]

Synonym: Ping_0201

Alternate gene names: 119943988

Gene position: 253191-254867 (Clockwise)

Preceding gene: 119943986

Following gene: 119943997

Centisome position: 5.55

GC content: 40.25

Gene sequence:

>1677_bases
ATGCTCTTAGATCAAATAGAGGTGGTCGGGTTTCGCGGTATTAATCGTTTGTCGATTAATGTTAAAAGTTTAAGTGCTTT
TCTGGGAGAAAACAGCTGGGGTAAATCAAGTCTTTTTGATGCATTATCACTTTTTTTATCGGGCACTAAAAAAGCTTATA
AATTTACTGGTGATGATTTTCACCGGCCTTCAATTTCTGATGTTAGCTGCAATAAGTTGATCCATCTGGTTTTTACTTTT
AAAGAGCAGGCGAATGGTGAGTCATTACAAAGGCAGTATAAAAGTATTAGTGCCGCCTGGAATCTACCCAAAGGGGAGTG
TAGTTATATTTATTACCAGGTAGATGGCAGTATCACGGAATCCGGTAATATCATCACTCAGCGTTATTTTTTAGATAATC
ATGGTCAAAAAAAATCATTCAAAAAAGACGTATTAGCTAATTTGGTGAATGAATTTATCTCCTTCGTGCCCGCACTGCGT
ATGGGTAGTGAGCGATCTCTGATGGTGACTGCAGAAGATACTGGGGATGTTGAATATTGCAGTAAAAGAGCGTCCTGTGA
GGCAAGGATAAAACGTATTTTTAAACGCCTGAATAAGTCATCTCAGCAATTGTCCGAATCAGAAATGAAGATGGGTTATC
AAGCTTTAGTTTATCTTTTTGACCATTATTTATTAAAACATTACGGGCGATCTCATTTTCACCGAGGTGATGCCCAGAAT
GATACCAAGGGGCAAATGCCTTTTTCTTTTCAGGCATTGACGCATTTTAATGATCTTTTAAAAACGGGTCACAAAAGTGA
TCGTGCTATGTTACTACTGGTACTTGGCGAGTTCTTGGAGGTGAGAGGTGAACATTTATTACGTCGCGGGGCGACGCCTA
TTTTGTTACTTGAAGAGCCGGAAAATAACCTTCACCCGGTTAATTTAGCGATCACCTGGCGTTTTTTTTCATTATTACCT
ATGCAAAAATTGGTCAGTACCAATTCAAGTCAGTTACTGTCATTTCTGCCATTAAGTTGTGTTCAGCGTTTAGTGCGTTG
TACTGGTTTGACCCAGAGTTATTCATTAAATCTAAAACACTTTTCCCAGAACGATTTGCGTCGTGTTGCTTTTCATATTC
GCATGACCAGACCGCAGAGCCTGTTTGCCCGTTCTTGGTTATTGGTTGAAGGGGAGACCGAAACGTGGTTATTGACGGAG
TTATCGCGTTTATGCGGTTACAATCTTGTTGTCGAAGGTGTACAGATTCTTGAGTTTGCACAATGTGGTGTCGCGCCATT
GATTAAGTTAGCACAAGACTTACACATTGAATGGTTTGTTTTAACCGACGGTGATGCCGCCGGACAAAAATATGCAGCAC
GGGTGGCAGAGATGTTATTGGTGAAGGATTCTTTAGTTAATCGTCTTGTGGTTTTACCCGCCTTGGATATTGAACACCTG
TTTTTTGATCATGGTTTTGCCAATGTTTATCTTGAAGCTGCACACTATACTGAAAAAGATTTAGCACGTATTACAACCCA
TAAAATTATTGATAAAGCGGTCCATAAATATTCTAAACCAGAGTTAGGCTTAGCGATAGCCAATGCCGTTGAAGAGCGAG
GCACTGATTCAATCCCACCTCTGCTAAAACGTCTTTTTTCGCGTCTGGTAGGGCTTGCAAGAAGCCAATCAGGATAA

Upstream 100 bases:

>100_bases
TGTGAGTTGAGGCGGATCACATTTTTGATGTTTATTTAAGATTTGCCTTATGCGGGGCTTCTGATATTTTTAAGGTAGGC
CTTAATTTACAGGGATAATT

Downstream 100 bases:

>100_bases
GATTTGCAGATTGTTTCAAAATCTACCTGTCAGCGCGATAGATAAGAGTGTGTTTTTGACCTGTAAGAGATAATCTATTG
TTCGTGAAGTTAATTTCTGA

Product: ATP-dependent endonuclease of the OLD family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 558; Mature: 558

Protein sequence:

>558_residues
MLLDQIEVVGFRGINRLSINVKSLSAFLGENSWGKSSLFDALSLFLSGTKKAYKFTGDDFHRPSISDVSCNKLIHLVFTF
KEQANGESLQRQYKSISAAWNLPKGECSYIYYQVDGSITESGNIITQRYFLDNHGQKKSFKKDVLANLVNEFISFVPALR
MGSERSLMVTAEDTGDVEYCSKRASCEARIKRIFKRLNKSSQQLSESEMKMGYQALVYLFDHYLLKHYGRSHFHRGDAQN
DTKGQMPFSFQALTHFNDLLKTGHKSDRAMLLLVLGEFLEVRGEHLLRRGATPILLLEEPENNLHPVNLAITWRFFSLLP
MQKLVSTNSSQLLSFLPLSCVQRLVRCTGLTQSYSLNLKHFSQNDLRRVAFHIRMTRPQSLFARSWLLVEGETETWLLTE
LSRLCGYNLVVEGVQILEFAQCGVAPLIKLAQDLHIEWFVLTDGDAAGQKYAARVAEMLLVKDSLVNRLVVLPALDIEHL
FFDHGFANVYLEAAHYTEKDLARITTHKIIDKAVHKYSKPELGLAIANAVEERGTDSIPPLLKRLFSRLVGLARSQSG

Sequences:

>Translated_558_residues
MLLDQIEVVGFRGINRLSINVKSLSAFLGENSWGKSSLFDALSLFLSGTKKAYKFTGDDFHRPSISDVSCNKLIHLVFTF
KEQANGESLQRQYKSISAAWNLPKGECSYIYYQVDGSITESGNIITQRYFLDNHGQKKSFKKDVLANLVNEFISFVPALR
MGSERSLMVTAEDTGDVEYCSKRASCEARIKRIFKRLNKSSQQLSESEMKMGYQALVYLFDHYLLKHYGRSHFHRGDAQN
DTKGQMPFSFQALTHFNDLLKTGHKSDRAMLLLVLGEFLEVRGEHLLRRGATPILLLEEPENNLHPVNLAITWRFFSLLP
MQKLVSTNSSQLLSFLPLSCVQRLVRCTGLTQSYSLNLKHFSQNDLRRVAFHIRMTRPQSLFARSWLLVEGETETWLLTE
LSRLCGYNLVVEGVQILEFAQCGVAPLIKLAQDLHIEWFVLTDGDAAGQKYAARVAEMLLVKDSLVNRLVVLPALDIEHL
FFDHGFANVYLEAAHYTEKDLARITTHKIIDKAVHKYSKPELGLAIANAVEERGTDSIPPLLKRLFSRLVGLARSQSG
>Mature_558_residues
MLLDQIEVVGFRGINRLSINVKSLSAFLGENSWGKSSLFDALSLFLSGTKKAYKFTGDDFHRPSISDVSCNKLIHLVFTF
KEQANGESLQRQYKSISAAWNLPKGECSYIYYQVDGSITESGNIITQRYFLDNHGQKKSFKKDVLANLVNEFISFVPALR
MGSERSLMVTAEDTGDVEYCSKRASCEARIKRIFKRLNKSSQQLSESEMKMGYQALVYLFDHYLLKHYGRSHFHRGDAQN
DTKGQMPFSFQALTHFNDLLKTGHKSDRAMLLLVLGEFLEVRGEHLLRRGATPILLLEEPENNLHPVNLAITWRFFSLLP
MQKLVSTNSSQLLSFLPLSCVQRLVRCTGLTQSYSLNLKHFSQNDLRRVAFHIRMTRPQSLFARSWLLVEGETETWLLTE
LSRLCGYNLVVEGVQILEFAQCGVAPLIKLAQDLHIEWFVLTDGDAAGQKYAARVAEMLLVKDSLVNRLVVLPALDIEHL
FFDHGFANVYLEAAHYTEKDLARITTHKIIDKAVHKYSKPELGLAIANAVEERGTDSIPPLLKRLFSRLVGLARSQSG

Specific function: Unknown

COG id: COG3593

COG function: function code L; Predicted ATP-dependent endonuclease of the OLD family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787102, Length=567, Percent_Identity=38.0952380952381, Blast_Score=376, Evalue=1e-105,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022602 [H]

Pfam domain/function: PF11398 DUF2813 [H]

EC number: NA

Molecular weight: Translated: 63265; Mature: 63265

Theoretical pI: Translated: 8.93; Mature: 8.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLLDQIEVVGFRGINRLSINVKSLSAFLGENSWGKSSLFDALSLFLSGTKKAYKFTGDDF
CCCCHHHHEECCCCCEEEEEHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHEEECCCCC
HRPSISDVSCNKLIHLVFTFKEQANGESLQRQYKSISAAWNLPKGECSYIYYQVDGSITE
CCCCCCCCCHHHHHHHEEEHHHHCCHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCEEC
SGNIITQRYFLDNHGQKKSFKKDVLANLVNEFISFVPALRMGSERSLMVTAEDTGDVEYC
CCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHH
SKRASCEARIKRIFKRLNKSSQQLSESEMKMGYQALVYLFDHYLLKHYGRSHFHRGDAQN
HHHCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCC
DTKGQMPFSFQALTHFNDLLKTGHKSDRAMLLLVLGEFLEVRGEHLLRRGATPILLLEEP
CCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECC
ENNLHPVNLAITWRFFSLLPMQKLVSTNSSQLLSFLPLSCVQRLVRCTGLTQSYSLNLKH
CCCCCEEEEEEEEHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEHH
FSQNDLRRVAFHIRMTRPQSLFARSWLLVEGETETWLLTELSRLCGYNLVVEGVQILEFA
CCHHHHHHHHHHEEECCCHHHHHHEEEEEECCCCHHHHHHHHHHCCCHHHHHHHHHHHHH
QCGVAPLIKLAQDLHIEWFVLTDGDAAGQKYAARVAEMLLVKDSLVNRLVVLPALDIEHL
HCCHHHHHHHHHHCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHEECCCCHHHH
FFDHGFANVYLEAAHYTEKDLARITTHKIIDKAVHKYSKPELGLAIANAVEERGTDSIPP
HHHCCHHHEEEEHHHCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHH
LLKRLFSRLVGLARSQSG
HHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MLLDQIEVVGFRGINRLSINVKSLSAFLGENSWGKSSLFDALSLFLSGTKKAYKFTGDDF
CCCCHHHHEECCCCCEEEEEHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHEEECCCCC
HRPSISDVSCNKLIHLVFTFKEQANGESLQRQYKSISAAWNLPKGECSYIYYQVDGSITE
CCCCCCCCCHHHHHHHEEEHHHHCCHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCEEC
SGNIITQRYFLDNHGQKKSFKKDVLANLVNEFISFVPALRMGSERSLMVTAEDTGDVEYC
CCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHH
SKRASCEARIKRIFKRLNKSSQQLSESEMKMGYQALVYLFDHYLLKHYGRSHFHRGDAQN
HHHCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCC
DTKGQMPFSFQALTHFNDLLKTGHKSDRAMLLLVLGEFLEVRGEHLLRRGATPILLLEEP
CCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECC
ENNLHPVNLAITWRFFSLLPMQKLVSTNSSQLLSFLPLSCVQRLVRCTGLTQSYSLNLKH
CCCCCEEEEEEEEHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEHH
FSQNDLRRVAFHIRMTRPQSLFARSWLLVEGETETWLLTELSRLCGYNLVVEGVQILEFA
CCHHHHHHHHHHEEECCCHHHHHHEEEEEECCCCHHHHHHHHHHCCCHHHHHHHHHHHHH
QCGVAPLIKLAQDLHIEWFVLTDGDAAGQKYAARVAEMLLVKDSLVNRLVVLPALDIEHL
HCCHHHHHHHHHHCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHEECCCCHHHH
FFDHGFANVYLEAAHYTEKDLARITTHKIIDKAVHKYSKPELGLAIANAVEERGTDSIPP
HHHCCHHHEEEEHHHCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHH
LLKRLFSRLVGLARSQSG
HHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]