| Definition | Psychromonas ingrahamii 37, complete genome. |
|---|---|
| Accession | NC_008709 |
| Length | 4,559,598 |
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The map label for this gene is hsdR [H]
Identifier: 119943937
GI number: 119943937
Start: 194756
End: 197338
Strand: Direct
Name: hsdR [H]
Synonym: Ping_0150
Alternate gene names: 119943937
Gene position: 194756-197338 (Clockwise)
Preceding gene: 119943936
Following gene: 119943943
Centisome position: 4.27
GC content: 43.55
Gene sequence:
>2583_bases ATGAATAGAAACGAATCTGAAACCCGCGCTGACTTAATCTCGCCAAAATTGGCCTTAGATGGCTGGGGAACCACTGAGCG CAGTATTATTCGCCGTGAGTTCGGCATTACCGCAGGCCGTATTTTAGGGGGTGGTAAACGAGCCTCAAGCCTGAGTAGTG ATTATGTTTTAGAATTCCAAGGCCGAAAACTTGCCGCCGTTGAAGCTAAAAGAGAAAGCTTAAGTTATACAGAGGGTGTT CGCCAAGCGAAAGACTACGCTCAACGTTTACAATGCCGTTTTGCCTATGCCACCAACGGGCATGACATTTACCAAATAGA TATGCTAACGGGTTTTGAGCAGTTAGTAGATAACTACCTAAGCCCAGCCGACATGTGGCGCTTGTGCTTCGAACCCGTCA CTGGAAAAACAGAGCCTGACTATACTGCCACATGGCGGACACGTTTTGCACAAATACCCTTTGAATTTAAAGGTGACTGG CAACCTCGTTATTACCAAGAAAACGCCATTAACCAAGCATTAGAAGCCATAGCGTTAGGTAAAGACCGCATACTACTTGC TCTTGCTACAGGCACGGGTAAAACCTGTATTGCCTTTCAAACCGCATGGAAGTTATTTCACAGTCGTTGGAGTTTACAAG CGGCTAAAAACCCCAGTAATGCTAAAAAACGCCCTCGTATTTTATTTTTGGCTGACCGTAATATATTAACCAAACAAGCC TTTAATGACTTTGGTGCTTTTGGCGAAGATGCCGTGGTGCGTATTACCCCGAGTGAAATTAAAAAAGCCAAAGGTGTACC TAAAAACGCCAGTATCTTTATGGCTATTTTCCAAACCTTAATGACAGATTCGGCTAGCAACCCAACTAACGACAGTGATG AGGAAGAATTGCCGGAAGACGAAGACTACAGCCTACCTATAGTTACCGACACCAGTAATTGTAATTTCAGACAATACCCC GAAGACTTCTTCGATTTTATTATTATTGATGAATGTCACCGTGGCGGTGCCAATGACGAAAGCTCATGGCGCGATATTCT TAACTATTTTGCGCCTGCTGTGCAATTAGGTTTAACCGCGACACCAAAGCGTACTGACAATGTCGACAGCTATAAATACT TTGGTGAACCCGTTTACAGCTACACATTAAAAGAAGGGATCAACGACGGATTTTTAACGCCCTTTAAGGTGTATCCAATT GTCGGCACGATGGACGAATACCAATATACCCCGGGAGATGCGGTGACGTTTAAAGGCGAACCCGAAGCAGGCCGAGTATA TAAAGAAGGTGACTTTAACCGCATCATCACTATGCCACAGCGCGAACAAAAACGTGTGCACTATTGGATGGATCACATCA ACCCACATGATAAAACCATCGTATTTTGTGGCACACAAGAACACGCGGGCATGGTGCGTGATTATATTAATCAATACGCA GTGCAAAAGGGTTGGACAACCAACCCAACGTATTGTGTACGTATTACCGCTAACGATGGCGCGGCGGGTGAGAATGATTT AAGAACCTTCTGCGACAACGAAAAAACCATACCAACCATATTAACTACGTCGCGTAAGTTATCCACTGGCGTAGATGCTC GTAACGTACGTAACATCGTACTAATGCGGCCCTGTAATAACATGATTGAGTTTAAGCAGATTATTGGTCGTGGTACGCGA CTGTACGACGGAAAATCATTTTTTACCGTGTATGATTTTGTAAAAGCACATCATAATTTTGCAGATCCAGAATGGGATGG TGAACCATTACCTCCTAAAGAAAAACCAGACGAACAACCTTGTGATATTTGTAATGTCAGCCCATGCATTTGCATCTGTG AGGTTTGTGGTTTTAACCCATGTAACTGTAAAGACGACACACCAAACGAACCCTGTGGCGAATGTAATCAATCTCCTTGC CAGTGTCTAACTGAGCCTTGTAATAACTGCGGTGATACACCTTGTAGCTGTAATACGGATGACGACGATGGGAATACGGG CAGACCAGATAAAATATTCATTACCCTAACCGACGGAAAAGTACGCCAAATACAACACATGAAAAGCGTATTGTTTATGG GTGCCGATGGTGAAATGCTCACCGCAAAACAATTTGTAGAACAACTGTTTGGTGACTTACCACGTTTTTTTGGTAACGAA GATGAATTACGCCAAATATGGAGCAATCCAAGCACACGCGAAAAGCTATTAACTGATTTGTATGAAGCGGGTTACGATGA TGAAAAACTCGATAGCATGAAAGACATTATCGATGCCAAAGACAGCGACGTATATGACCTATTAGCCTTTGTAGCCTACG CAAAAGACACCCATACCCGTAAAGAACGTGTCGCAACGGCGAAACCGGGTATATCTAGTGAGTTCACCTACAAACAAGTC GAGTTTATCGAATTCATATTAGATAAATACATAGAAGACGGCGTACAAGAATTGGCAGCTAAAAAAATGCGCAGTTTGGT AGAACTTAAATACAACACCATAAGCGATGCCGCAGCAGAGTTTGGTTCACCGGCAGCAATACGTGACACGTTTATCGGCT TTCAGAAGCATTTGTATCAGTAG
Upstream 100 bases:
>100_bases CGAACTCAAAAAATCGATCTTACAAAAAGCCTTTAGTGGAGAGTTAAGCACAGTGGCTAAGTAATCACCGGTAAATAATT TTATAACACAGGTAAGTGTC
Downstream 100 bases:
>100_bases AAAAAGGCTGTAATGAAAACGGGTTTTAGAGAAGGGTATTATTTAAATATCAATGAAAAAGAAACACTGGCAATAAGAGA TGCTCTGGTTGCAGTACTGA
Product: type III restriction enzyme, res subunit
Products: NA
Alternate protein names: R.EcoEI [H]
Number of amino acids: Translated: 860; Mature: 860
Protein sequence:
>860_residues MNRNESETRADLISPKLALDGWGTTERSIIRREFGITAGRILGGGKRASSLSSDYVLEFQGRKLAAVEAKRESLSYTEGV RQAKDYAQRLQCRFAYATNGHDIYQIDMLTGFEQLVDNYLSPADMWRLCFEPVTGKTEPDYTATWRTRFAQIPFEFKGDW QPRYYQENAINQALEAIALGKDRILLALATGTGKTCIAFQTAWKLFHSRWSLQAAKNPSNAKKRPRILFLADRNILTKQA FNDFGAFGEDAVVRITPSEIKKAKGVPKNASIFMAIFQTLMTDSASNPTNDSDEEELPEDEDYSLPIVTDTSNCNFRQYP EDFFDFIIIDECHRGGANDESSWRDILNYFAPAVQLGLTATPKRTDNVDSYKYFGEPVYSYTLKEGINDGFLTPFKVYPI VGTMDEYQYTPGDAVTFKGEPEAGRVYKEGDFNRIITMPQREQKRVHYWMDHINPHDKTIVFCGTQEHAGMVRDYINQYA VQKGWTTNPTYCVRITANDGAAGENDLRTFCDNEKTIPTILTTSRKLSTGVDARNVRNIVLMRPCNNMIEFKQIIGRGTR LYDGKSFFTVYDFVKAHHNFADPEWDGEPLPPKEKPDEQPCDICNVSPCICICEVCGFNPCNCKDDTPNEPCGECNQSPC QCLTEPCNNCGDTPCSCNTDDDDGNTGRPDKIFITLTDGKVRQIQHMKSVLFMGADGEMLTAKQFVEQLFGDLPRFFGNE DELRQIWSNPSTREKLLTDLYEAGYDDEKLDSMKDIIDAKDSDVYDLLAFVAYAKDTHTRKERVATAKPGISSEFTYKQV EFIEFILDKYIEDGVQELAAKKMRSLVELKYNTISDAAAEFGSPAAIRDTFIGFQKHLYQ
Sequences:
>Translated_860_residues MNRNESETRADLISPKLALDGWGTTERSIIRREFGITAGRILGGGKRASSLSSDYVLEFQGRKLAAVEAKRESLSYTEGV RQAKDYAQRLQCRFAYATNGHDIYQIDMLTGFEQLVDNYLSPADMWRLCFEPVTGKTEPDYTATWRTRFAQIPFEFKGDW QPRYYQENAINQALEAIALGKDRILLALATGTGKTCIAFQTAWKLFHSRWSLQAAKNPSNAKKRPRILFLADRNILTKQA FNDFGAFGEDAVVRITPSEIKKAKGVPKNASIFMAIFQTLMTDSASNPTNDSDEEELPEDEDYSLPIVTDTSNCNFRQYP EDFFDFIIIDECHRGGANDESSWRDILNYFAPAVQLGLTATPKRTDNVDSYKYFGEPVYSYTLKEGINDGFLTPFKVYPI VGTMDEYQYTPGDAVTFKGEPEAGRVYKEGDFNRIITMPQREQKRVHYWMDHINPHDKTIVFCGTQEHAGMVRDYINQYA VQKGWTTNPTYCVRITANDGAAGENDLRTFCDNEKTIPTILTTSRKLSTGVDARNVRNIVLMRPCNNMIEFKQIIGRGTR LYDGKSFFTVYDFVKAHHNFADPEWDGEPLPPKEKPDEQPCDICNVSPCICICEVCGFNPCNCKDDTPNEPCGECNQSPC QCLTEPCNNCGDTPCSCNTDDDDGNTGRPDKIFITLTDGKVRQIQHMKSVLFMGADGEMLTAKQFVEQLFGDLPRFFGNE DELRQIWSNPSTREKLLTDLYEAGYDDEKLDSMKDIIDAKDSDVYDLLAFVAYAKDTHTRKERVATAKPGISSEFTYKQV EFIEFILDKYIEDGVQELAAKKMRSLVELKYNTISDAAAEFGSPAAIRDTFIGFQKHLYQ >Mature_860_residues MNRNESETRADLISPKLALDGWGTTERSIIRREFGITAGRILGGGKRASSLSSDYVLEFQGRKLAAVEAKRESLSYTEGV RQAKDYAQRLQCRFAYATNGHDIYQIDMLTGFEQLVDNYLSPADMWRLCFEPVTGKTEPDYTATWRTRFAQIPFEFKGDW QPRYYQENAINQALEAIALGKDRILLALATGTGKTCIAFQTAWKLFHSRWSLQAAKNPSNAKKRPRILFLADRNILTKQA FNDFGAFGEDAVVRITPSEIKKAKGVPKNASIFMAIFQTLMTDSASNPTNDSDEEELPEDEDYSLPIVTDTSNCNFRQYP EDFFDFIIIDECHRGGANDESSWRDILNYFAPAVQLGLTATPKRTDNVDSYKYFGEPVYSYTLKEGINDGFLTPFKVYPI VGTMDEYQYTPGDAVTFKGEPEAGRVYKEGDFNRIITMPQREQKRVHYWMDHINPHDKTIVFCGTQEHAGMVRDYINQYA VQKGWTTNPTYCVRITANDGAAGENDLRTFCDNEKTIPTILTTSRKLSTGVDARNVRNIVLMRPCNNMIEFKQIIGRGTR LYDGKSFFTVYDFVKAHHNFADPEWDGEPLPPKEKPDEQPCDICNVSPCICICEVCGFNPCNCKDDTPNEPCGECNQSPC QCLTEPCNNCGDTPCSCNTDDDDGNTGRPDKIFITLTDGKVRQIQHMKSVLFMGADGEMLTAKQFVEQLFGDLPRFFGNE DELRQIWSNPSTREKLLTDLYEAGYDDEKLDSMKDIIDAKDSDVYDLLAFVAYAKDTHTRKERVATAKPGISSEFTYKQV EFIEFILDKYIEDGVQELAAKKMRSLVELKYNTISDAAAEFGSPAAIRDTFIGFQKHLYQ
Specific function: The EcoEI enzyme recognizes 5'-GAGN(7)ATGC-3'. Subunit R is required for both nuclease and ATPase activities, but not for modification [H]
COG id: COG4096
COG function: function code V; Type I site-specific restriction-modification system, R (restriction) subunit and related helicases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 helicase C-terminal domain [H]
Homologues:
Organism=Escherichia coli, GI226510991, Length=673, Percent_Identity=26.1515601783061, Blast_Score=146, Evalue=7e-36, Organism=Escherichia coli, GI1788511, Length=477, Percent_Identity=23.4800838574423, Blast_Score=93, Evalue=6e-20,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014001 - InterPro: IPR001650 - InterPro: IPR014021 - InterPro: IPR006935 - InterPro: IPR013670 - InterPro: IPR007409 [H]
Pfam domain/function: PF08463 EcoEI_R_C; PF04313 HSDR_N; PF04851 ResIII [H]
EC number: =3.1.21.3 [H]
Molecular weight: Translated: 97483; Mature: 97483
Theoretical pI: Translated: 4.84; Mature: 4.84
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.9 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 2.9 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 4.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNRNESETRADLISPKLALDGWGTTERSIIRREFGITAGRILGGGKRASSLSSDYVLEFQ CCCCCHHHHHHHCCCCEEECCCCCHHHHHHHHHHCCCHHHEECCCCHHCCCCCCEEEEEC GRKLAAVEAKRESLSYTEGVRQAKDYAQRLQCRFAYATNGHDIYQIDMLTGFEQLVDNYL CCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCEEEEEHHHHHHHHHHHHHC SPADMWRLCFEPVTGKTEPDYTATWRTRFAQIPFEFKGDWQPRYYQENAINQALEAIALG CHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEECCCCCCCHHHHHHHHHHHHHHHCC KDRILLALATGTGKTCIAFQTAWKLFHSRWSLQAAKNPSNAKKRPRILFLADRNILTKQA CCEEEEEEECCCCCEEEHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCHHHHHH FNDFGAFGEDAVVRITPSEIKKAKGVPKNASIFMAIFQTLMTDSASNPTNDSDEEELPED HHHHCCCCCCCEEEECHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCC EDYSLPIVTDTSNCNFRQYPEDFFDFIIIDECHRGGANDESSWRDILNYFAPAVQLGLTA CCCCCEEEECCCCCCCCCCCHHHHHEEEEEHHHCCCCCCHHHHHHHHHHHHHHHHHCCCC TPKRTDNVDSYKYFGEPVYSYTLKEGINDGFLTPFKVYPIVGTMDEYQYTPGDAVTFKGE CCCCCCCCCCHHHHCCHHHHHHHHHCCCCCCCCCEEEEEEEECHHHCCCCCCCEEEECCC PEAGRVYKEGDFNRIITMPQREQKRVHYWMDHINPHDKTIVFCGTQEHAGMVRDYINQYA CCCCCEEECCCCCEEEECCCHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHHH VQKGWTTNPTYCVRITANDGAAGENDLRTFCDNEKTIPTILTTSRKLSTGVDARNVRNIV HHCCCCCCCEEEEEEECCCCCCCCHHHHHHHCCCCCCCHHEECCHHHHCCCCCCCCCEEE LMRPCNNMIEFKQIIGRGTRLYDGKSFFTVYDFVKAHHNFADPEWDGEPLPPKEKPDEQP EECCCCHHHHHHHHHCCCCEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC CDICNVSPCICICEVCGFNPCNCKDDTPNEPCGECNQSPCQCLTEPCNNCGDTPCSCNTD CCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCC DDDGNTGRPDKIFITLTDGKVRQIQHMKSVLFMGADGEMLTAKQFVEQLFGDLPRFFGNE CCCCCCCCCCEEEEEECCCHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHHHHHHCCH DELRQIWSNPSTREKLLTDLYEAGYDDEKLDSMKDIIDAKDSDVYDLLAFVAYAKDTHTR HHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHH KERVATAKPGISSEFTYKQVEFIEFILDKYIEDGVQELAAKKMRSLVELKYNTISDAAAE HHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FGSPAAIRDTFIGFQKHLYQ HCCCHHHHHHHHHHHHHHCC >Mature Secondary Structure MNRNESETRADLISPKLALDGWGTTERSIIRREFGITAGRILGGGKRASSLSSDYVLEFQ CCCCCHHHHHHHCCCCEEECCCCCHHHHHHHHHHCCCHHHEECCCCHHCCCCCCEEEEEC GRKLAAVEAKRESLSYTEGVRQAKDYAQRLQCRFAYATNGHDIYQIDMLTGFEQLVDNYL CCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCEEEEEHHHHHHHHHHHHHC SPADMWRLCFEPVTGKTEPDYTATWRTRFAQIPFEFKGDWQPRYYQENAINQALEAIALG CHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEECCCCCCCHHHHHHHHHHHHHHHCC KDRILLALATGTGKTCIAFQTAWKLFHSRWSLQAAKNPSNAKKRPRILFLADRNILTKQA CCEEEEEEECCCCCEEEHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCHHHHHH FNDFGAFGEDAVVRITPSEIKKAKGVPKNASIFMAIFQTLMTDSASNPTNDSDEEELPED HHHHCCCCCCCEEEECHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCC EDYSLPIVTDTSNCNFRQYPEDFFDFIIIDECHRGGANDESSWRDILNYFAPAVQLGLTA CCCCCEEEECCCCCCCCCCCHHHHHEEEEEHHHCCCCCCHHHHHHHHHHHHHHHHHCCCC TPKRTDNVDSYKYFGEPVYSYTLKEGINDGFLTPFKVYPIVGTMDEYQYTPGDAVTFKGE CCCCCCCCCCHHHHCCHHHHHHHHHCCCCCCCCCEEEEEEEECHHHCCCCCCCEEEECCC PEAGRVYKEGDFNRIITMPQREQKRVHYWMDHINPHDKTIVFCGTQEHAGMVRDYINQYA CCCCCEEECCCCCEEEECCCHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHHH VQKGWTTNPTYCVRITANDGAAGENDLRTFCDNEKTIPTILTTSRKLSTGVDARNVRNIV HHCCCCCCCEEEEEEECCCCCCCCHHHHHHHCCCCCCCHHEECCHHHHCCCCCCCCCEEE LMRPCNNMIEFKQIIGRGTRLYDGKSFFTVYDFVKAHHNFADPEWDGEPLPPKEKPDEQP EECCCCHHHHHHHHHCCCCEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC CDICNVSPCICICEVCGFNPCNCKDDTPNEPCGECNQSPCQCLTEPCNNCGDTPCSCNTD CCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCC DDDGNTGRPDKIFITLTDGKVRQIQHMKSVLFMGADGEMLTAKQFVEQLFGDLPRFFGNE CCCCCCCCCCEEEEEECCCHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHHHHHHCCH DELRQIWSNPSTREKLLTDLYEAGYDDEKLDSMKDIIDAKDSDVYDLLAFVAYAKDTHTR HHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHH KERVATAKPGISSEFTYKQVEFIEFILDKYIEDGVQELAAKKMRSLVELKYNTISDAAAE HHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FGSPAAIRDTFIGFQKHLYQ HCCCHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8412658 [H]