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The map label for this gene is ygiK [H]

Identifier: 119943923

GI number: 119943923

Start: 175017

End: 176324

Strand: Reverse

Name: ygiK [H]

Synonym: Ping_0133

Alternate gene names: 119943923

Gene position: 176324-175017 (Counterclockwise)

Preceding gene: 119943924

Following gene: 119943922

Centisome position: 3.87

GC content: 44.04

Gene sequence:

>1308_bases
ATGGAATGGCAAATCATTCTTACTCTTTTTGGGAGTTTTGCTGTGCTCCTCGTCATAGGTGTGCCGGTTTCGTTTGCGAT
TGGTTTATCTTCACTTGCAACTATAATGCTAAGCCTTCCAGCAGGTCCTGCCATTGCTGTCATAGCACAACGTATGGCAA
GCGGGTTAGATAGCTTTGCTCTGTTAGCTATCCCATTTTTCATTTTAGCGGGTAATATAATGAATCAGGGAGGTATTGCT
ACCCGCCTGATAAACCTGGCTAAAGTGCTTGGAGGGCGCTTACCTGGTTCACTTGCACACGTTAACGTCATTGCAAACAT
GATGTTTGGTTCAATTTCAGGTTCAGCCGTCGCCTCCGCGGCGGCAGTAGGTGGAACAATGGCGCCACTGCAAAAGAAAG
AGGGTTATGATGAACATTTTTCTGCAGCGGTCAATATCACTTCTTGCCCGACAGGTTTGTTAATTCCCCCAAGTAATACC
TTGATTGTATTTTCATTAGTTTCCGGCGGGACATCTATCGCGGCGCTTTTCTTGGCGGGTTATATTCCAGGGCTAATTAT
GGGGTTAAGCTTAATGTGCGTCGCCGGGTTTATTTCCAAGCGTCGTGGCTACCCTCTCGCGCCGAGAGCACCCTTATCTG
AAGTTATTGACACTACATTAAAAGCCCTCCCTTCTTTAACACTCGTTATTATTATCATGGGAGGTATCATAGCCGGTATT
TTTACGGCAACAGAAGCATCGGCAATCGCGGTGGTTTATACCTTTTTACTGGCATTTGTTTTTTACCGTGAAGCCAAATT
GAGCGAGCTGCCAAAGATTATTTTAGAATCAGCAGTGACGACCTCTATTGTTTTATTATTGATCGGCGCTTCAATGGGCA
TGTCATGGGCCATGGCTAACGGTGATATTCCTTACATGATTGCTGATGCGCTACTTGCTGTTTCGGATGACCCATTGATT
ATACTTTTGATTATTAACGTTATTTTGTTAATCATCGGTATCTTCATGGACATGACACCGGCAGTGCTTATTTTTACACC
TATCTTTTTACCTATTGCATTAGACTTAGGTATCGACCCTGTGCACTTCGGCATAATGATGACCTTTAACCTTGCTATCG
GTCTTTGTACCCCCCCCGTAGGCAGCGCGCTATTCATTGGTTGTTCTGTTGCAAAAATATCCATTGATAAAGTCATTAAA
CCCTTATTACCCTTCTACGCTGCTCTAATTGTTGCGCTTATGGCCGTTACCTTTATTCCTGAGCTAAGCCTTTACTTACC
CAGGTTATTTCTAGGTTACGGTGACTAA

Upstream 100 bases:

>100_bases
AATAAAAGAACTTTTCTCTACGTCAGCGCAATAGTTAATATATTAATTACTGAAAAACACACTAAACACTCATCGTTTGT
TAATACTAAGGAATATTTTT

Downstream 100 bases:

>100_bases
AATCATCTGTTCAACAATAAATTTATATATGCCTCGTCGAAAATATATCGGCGCGATAAACACAGGAAAGATAATATGAA
AAACATAGCGAATTCAGAAA

Product: TRAP dicarboxylate transporter, DctM subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 435; Mature: 435

Protein sequence:

>435_residues
MEWQIILTLFGSFAVLLVIGVPVSFAIGLSSLATIMLSLPAGPAIAVIAQRMASGLDSFALLAIPFFILAGNIMNQGGIA
TRLINLAKVLGGRLPGSLAHVNVIANMMFGSISGSAVASAAAVGGTMAPLQKKEGYDEHFSAAVNITSCPTGLLIPPSNT
LIVFSLVSGGTSIAALFLAGYIPGLIMGLSLMCVAGFISKRRGYPLAPRAPLSEVIDTTLKALPSLTLVIIIMGGIIAGI
FTATEASAIAVVYTFLLAFVFYREAKLSELPKIILESAVTTSIVLLLIGASMGMSWAMANGDIPYMIADALLAVSDDPLI
ILLIINVILLIIGIFMDMTPAVLIFTPIFLPIALDLGIDPVHFGIMMTFNLAIGLCTPPVGSALFIGCSVAKISIDKVIK
PLLPFYAALIVALMAVTFIPELSLYLPRLFLGYGD

Sequences:

>Translated_435_residues
MEWQIILTLFGSFAVLLVIGVPVSFAIGLSSLATIMLSLPAGPAIAVIAQRMASGLDSFALLAIPFFILAGNIMNQGGIA
TRLINLAKVLGGRLPGSLAHVNVIANMMFGSISGSAVASAAAVGGTMAPLQKKEGYDEHFSAAVNITSCPTGLLIPPSNT
LIVFSLVSGGTSIAALFLAGYIPGLIMGLSLMCVAGFISKRRGYPLAPRAPLSEVIDTTLKALPSLTLVIIIMGGIIAGI
FTATEASAIAVVYTFLLAFVFYREAKLSELPKIILESAVTTSIVLLLIGASMGMSWAMANGDIPYMIADALLAVSDDPLI
ILLIINVILLIIGIFMDMTPAVLIFTPIFLPIALDLGIDPVHFGIMMTFNLAIGLCTPPVGSALFIGCSVAKISIDKVIK
PLLPFYAALIVALMAVTFIPELSLYLPRLFLGYGD
>Mature_435_residues
MEWQIILTLFGSFAVLLVIGVPVSFAIGLSSLATIMLSLPAGPAIAVIAQRMASGLDSFALLAIPFFILAGNIMNQGGIA
TRLINLAKVLGGRLPGSLAHVNVIANMMFGSISGSAVASAAAVGGTMAPLQKKEGYDEHFSAAVNITSCPTGLLIPPSNT
LIVFSLVSGGTSIAALFLAGYIPGLIMGLSLMCVAGFISKRRGYPLAPRAPLSEVIDTTLKALPSLTLVIIIMGGIIAGI
FTATEASAIAVVYTFLLAFVFYREAKLSELPKIILESAVTTSIVLLLIGASMGMSWAMANGDIPYMIADALLAVSDDPLI
ILLIINVILLIIGIFMDMTPAVLIFTPIFLPIALDLGIDPVHFGIMMTFNLAIGLCTPPVGSALFIGCSVAKISIDKVIK
PLLPFYAALIVALMAVTFIPELSLYLPRLFLGYGD

Specific function: Unknown

COG id: COG1593

COG function: function code G; TRAP-type C4-dicarboxylate transport system, large permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yiaN/ygiK family [H]

Homologues:

Organism=Escherichia coli, GI48994950, Length=404, Percent_Identity=38.1188118811881, Blast_Score=249, Evalue=3e-67,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010656
- InterPro:   IPR004681 [H]

Pfam domain/function: PF06808 DctM [H]

EC number: NA

Molecular weight: Translated: 45431; Mature: 45431

Theoretical pI: Translated: 5.70; Mature: 5.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEWQIILTLFGSFAVLLVIGVPVSFAIGLSSLATIMLSLPAGPAIAVIAQRMASGLDSFA
CCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHH
LLAIPFFILAGNIMNQGGIATRLINLAKVLGGRLPGSLAHVNVIANMMFGSISGSAVASA
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHHHH
AAVGGTMAPLQKKEGYDEHFSAAVNITSCPTGLLIPPSNTLIVFSLVSGGTSIAALFLAG
HHHCCCCCCHHHHCCCCHHHHHEEEEECCCCCCEECCCCCEEEEEECCCCHHHHHHHHHH
YIPGLIMGLSLMCVAGFISKRRGYPLAPRAPLSEVIDTTLKALPSLTLVIIIMGGIIAGI
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FTATEASAIAVVYTFLLAFVFYREAKLSELPKIILESAVTTSIVLLLIGASMGMSWAMAN
HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECC
GDIPYMIADALLAVSDDPLIILLIINVILLIIGIFMDMTPAVLIFTPIFLPIALDLGIDP
CCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCH
VHFGIMMTFNLAIGLCTPPVGSALFIGCSVAKISIDKVIKPLLPFYAALIVALMAVTFIP
HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ELSLYLPRLFLGYGD
HHHHHHHHHHHCCCC
>Mature Secondary Structure
MEWQIILTLFGSFAVLLVIGVPVSFAIGLSSLATIMLSLPAGPAIAVIAQRMASGLDSFA
CCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHH
LLAIPFFILAGNIMNQGGIATRLINLAKVLGGRLPGSLAHVNVIANMMFGSISGSAVASA
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHHHH
AAVGGTMAPLQKKEGYDEHFSAAVNITSCPTGLLIPPSNTLIVFSLVSGGTSIAALFLAG
HHHCCCCCCHHHHCCCCHHHHHEEEEECCCCCCEECCCCCEEEEEECCCCHHHHHHHHHH
YIPGLIMGLSLMCVAGFISKRRGYPLAPRAPLSEVIDTTLKALPSLTLVIIIMGGIIAGI
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FTATEASAIAVVYTFLLAFVFYREAKLSELPKIILESAVTTSIVLLLIGASMGMSWAMAN
HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECC
GDIPYMIADALLAVSDDPLIILLIINVILLIIGIFMDMTPAVLIFTPIFLPIALDLGIDP
CCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCH
VHFGIMMTFNLAIGLCTPPVGSALFIGCSVAKISIDKVIKPLLPFYAALIVALMAVTFIP
HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ELSLYLPRLFLGYGD
HHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11677609 [H]