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The map label for this gene is exeD [H]

Identifier: 119943890

GI number: 119943890

Start: 129387

End: 131375

Strand: Direct

Name: exeD [H]

Synonym: Ping_0097

Alternate gene names: 119943890

Gene position: 129387-131375 (Clockwise)

Preceding gene: 119943889

Following gene: 119943891

Centisome position: 2.84

GC content: 40.87

Gene sequence:

>1989_bases
ATGAATCTTTTCATGATACAAAAAAAATTATCTAAGCAATTAATTTTCAGTTTGTTGGTTTTATTGATTTGTGCGATTAA
TGCAGGGCGTGTATCTGCCACTGAATATTCGGCCAGTTTCAAAAATGCGGATATTAATGAGTTTATCAATATCGTTGGTA
AAAATTTAAATAAAACTATTATATTAGATCCGTCGGTGCGTGGCAGCATCAATGTACGCAGTTACGATTTGTTAAATGAA
AGACAGTATTATCAGTTTTTCTTAAATGTCTTAGAGGTTTATGGCTTCGCTACTGTTGAAATGGAGAATGGTATAGTCAA
AGTAGTTAAAGCCAAGGACGCTAAAACAGCTGCTATCCCTGTTGTTGATGATGGCACAACCTATATCGGTGACCAAATGG
TGACCCGGGTAGTCCCTGTTACTAACGTTTCCGTGCGTGAGTTAGCCCCTCTATTGCGGCAATTAAATGATAATGCCGGC
GGGGGTAATGTGGTGCATTATGACCCTTCCAACGTCTTAATGATCACCGGCCGAGCTGCTGTTGTTAATCGTTTGGTAGA
GATTGTTAATCGGGTCGATAAGGCAGGTGATCAGGAAGTTGATATCATTAAACTTAAATATGCCAGCGCGCTGGAGATGG
TTAAAATTGTTGATGCGATTCAGGGATCGTCAAGCGGGGCAAAAAATATCAGCTCATCTGTTTTACAGCCTAAATTAGTG
GCTGATGAACGTACTAACTCGGTTATTATCAGCGGCGAACCTAAATCGCGATCGCGCATTGTTAAGTTAATTAAATCATT
AGATGCTGAACTGTTGAATGAGGGTAATACACAGGTTTTTTACCTTAAATATGCAAGTGCTCAGGAAGTAGTTGATGTAT
TAAAAGGGGTTAGTAAAAGTATTGATAGTCCCCAGGGAAATGCGGCAGGCCAATCGGGCTCTGCTCAAGGGGGCCTCAGT
ATTGAAGCGCATGAAGGTACTAATGCGATTGTTGTTTCTGCACAACCGGCTCTGATGTCATCATTAACCAGTATTATTCG
TCAATTAGATATTCGCCGTGCGCAAGTTTTAGTAGAAGCTATTATTGTCGAGGTTTCTGAAGGTGATGGTATTAATCTTA
ACGTTCAATGGGGAACCACCAATGGTGGCACACAATTCCAGGATAGTGCTGTCACGACTGGTAACATTGTAGCGGGTACA
CAGGACAATGATGCGGCTATTTCAGCAATAGGCAACATTTCCGGAGGAATCGCCGGTTATATAGGATCCAATTGGGGTGT
TGTGCTGCAGGCATTAAGCAGCGCCACAACCTCTAATATATTAGCGACACCGAGCTTAACAACTTTGGATAATCAGGAAG
CCAGTTTTATTGTCGGTGATGAAGTACCAGTTTTAACCGGCTCAACTTCCAGCGCAACTAATGATAACCCATTCCAAACC
ATTGAACGTAAAGAGATCGGCATTAAATTAAAGGTGACCCCGCAGATTAATGAAGGGGATTCAGTGCAAATGATCATTGA
ACAAGAGGTTTCAGATATTAAAAATGATACTTCCGCCGTGGATGTTATTTTTTCGACTCGTTCAGTTAAAACAACGGTAT
TAGCAAAGTCAGGTGAAACCATCGTAATTGGTGGTTTGATTGATGAAACTGTCAAAGAGACTGTTCAGAAAGTGCCTTTA
TTGGGGGATATTCCTTTGTTGGGATTCCTTTTCAGATCAACTCAAAGTAGCACAGAAAAACGCAATCTAATGATCTTCCT
GCGCGCAACCATTATCCGGGATGATCAGACTATGATGAATCTTAGTACGCGGAAATATAGTTTAATTCGAGCTGTTCAGG
AAAAACAGCGTGATACTGGTATTAATTTGATGCCTAACGCTACTCCTCCCATCCTGCCTGAATGGGGGCAAAGTTATGAA
ATTAATCCGGATCATTTCATCAAGTCAGAAAGTAAAATCAGAAAACCAACAACAGAAGGTGTGAACTAA

Upstream 100 bases:

>100_bases
TCCATAGCTTACATGCATGGATGATGATTGCAGTAAACTATATTGTAGAGCGTAAATAGTTAATTTGCCGTGACAGTAAT
AATTTGGAGTTTTAATAAAG

Downstream 100 bases:

>100_bases
TGATCACGCCTGAGCAAGATACTTTGCAGGTGGTGGCGGCGCTCAATGAAGCTGAGCTTATTGAAGTCACGCCGGGTGGT
CAGTTACCTTTCCCATTTTC

Product: general secretion pathway protein D

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 662; Mature: 662

Protein sequence:

>662_residues
MNLFMIQKKLSKQLIFSLLVLLICAINAGRVSATEYSASFKNADINEFINIVGKNLNKTIILDPSVRGSINVRSYDLLNE
RQYYQFFLNVLEVYGFATVEMENGIVKVVKAKDAKTAAIPVVDDGTTYIGDQMVTRVVPVTNVSVRELAPLLRQLNDNAG
GGNVVHYDPSNVLMITGRAAVVNRLVEIVNRVDKAGDQEVDIIKLKYASALEMVKIVDAIQGSSSGAKNISSSVLQPKLV
ADERTNSVIISGEPKSRSRIVKLIKSLDAELLNEGNTQVFYLKYASAQEVVDVLKGVSKSIDSPQGNAAGQSGSAQGGLS
IEAHEGTNAIVVSAQPALMSSLTSIIRQLDIRRAQVLVEAIIVEVSEGDGINLNVQWGTTNGGTQFQDSAVTTGNIVAGT
QDNDAAISAIGNISGGIAGYIGSNWGVVLQALSSATTSNILATPSLTTLDNQEASFIVGDEVPVLTGSTSSATNDNPFQT
IERKEIGIKLKVTPQINEGDSVQMIIEQEVSDIKNDTSAVDVIFSTRSVKTTVLAKSGETIVIGGLIDETVKETVQKVPL
LGDIPLLGFLFRSTQSSTEKRNLMIFLRATIIRDDQTMMNLSTRKYSLIRAVQEKQRDTGINLMPNATPPILPEWGQSYE
INPDHFIKSESKIRKPTTEGVN

Sequences:

>Translated_662_residues
MNLFMIQKKLSKQLIFSLLVLLICAINAGRVSATEYSASFKNADINEFINIVGKNLNKTIILDPSVRGSINVRSYDLLNE
RQYYQFFLNVLEVYGFATVEMENGIVKVVKAKDAKTAAIPVVDDGTTYIGDQMVTRVVPVTNVSVRELAPLLRQLNDNAG
GGNVVHYDPSNVLMITGRAAVVNRLVEIVNRVDKAGDQEVDIIKLKYASALEMVKIVDAIQGSSSGAKNISSSVLQPKLV
ADERTNSVIISGEPKSRSRIVKLIKSLDAELLNEGNTQVFYLKYASAQEVVDVLKGVSKSIDSPQGNAAGQSGSAQGGLS
IEAHEGTNAIVVSAQPALMSSLTSIIRQLDIRRAQVLVEAIIVEVSEGDGINLNVQWGTTNGGTQFQDSAVTTGNIVAGT
QDNDAAISAIGNISGGIAGYIGSNWGVVLQALSSATTSNILATPSLTTLDNQEASFIVGDEVPVLTGSTSSATNDNPFQT
IERKEIGIKLKVTPQINEGDSVQMIIEQEVSDIKNDTSAVDVIFSTRSVKTTVLAKSGETIVIGGLIDETVKETVQKVPL
LGDIPLLGFLFRSTQSSTEKRNLMIFLRATIIRDDQTMMNLSTRKYSLIRAVQEKQRDTGINLMPNATPPILPEWGQSYE
INPDHFIKSESKIRKPTTEGVN
>Mature_662_residues
MNLFMIQKKLSKQLIFSLLVLLICAINAGRVSATEYSASFKNADINEFINIVGKNLNKTIILDPSVRGSINVRSYDLLNE
RQYYQFFLNVLEVYGFATVEMENGIVKVVKAKDAKTAAIPVVDDGTTYIGDQMVTRVVPVTNVSVRELAPLLRQLNDNAG
GGNVVHYDPSNVLMITGRAAVVNRLVEIVNRVDKAGDQEVDIIKLKYASALEMVKIVDAIQGSSSGAKNISSSVLQPKLV
ADERTNSVIISGEPKSRSRIVKLIKSLDAELLNEGNTQVFYLKYASAQEVVDVLKGVSKSIDSPQGNAAGQSGSAQGGLS
IEAHEGTNAIVVSAQPALMSSLTSIIRQLDIRRAQVLVEAIIVEVSEGDGINLNVQWGTTNGGTQFQDSAVTTGNIVAGT
QDNDAAISAIGNISGGIAGYIGSNWGVVLQALSSATTSNILATPSLTTLDNQEASFIVGDEVPVLTGSTSSATNDNPFQT
IERKEIGIKLKVTPQINEGDSVQMIIEQEVSDIKNDTSAVDVIFSTRSVKTTVLAKSGETIVIGGLIDETVKETVQKVPL
LGDIPLLGFLFRSTQSSTEKRNLMIFLRATIIRDDQTMMNLSTRKYSLIRAVQEKQRDTGINLMPNATPPILPEWGQSYE
INPDHFIKSESKIRKPTTEGVN

Specific function: Involved in a general secretion pathway (GSP) for the export of proteins [H]

COG id: COG1450

COG function: function code NU; Type II secretory pathway, component PulD

Gene ontology:

Cell location: Cell outer membrane (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP D family [H]

Homologues:

Organism=Escherichia coli, GI87082242, Length=623, Percent_Identity=47.6725521669342, Blast_Score=560, Evalue=1e-160,
Organism=Escherichia coli, GI1789793, Length=289, Percent_Identity=25.9515570934256, Blast_Score=85, Evalue=1e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001775
- InterPro:   IPR005644
- InterPro:   IPR004846
- InterPro:   IPR013356
- InterPro:   IPR004845 [H]

Pfam domain/function: PF00263 Secretin; PF03958 Secretin_N [H]

EC number: NA

Molecular weight: Translated: 71375; Mature: 71375

Theoretical pI: Translated: 5.04; Mature: 5.04

Prosite motif: PS00875 T2SP_D

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLFMIQKKLSKQLIFSLLVLLICAINAGRVSATEYSASFKNADINEFINIVGKNLNKTI
CCEEHHHHHHHHHHHHHHHHHHHHHCCCCCEECHHHCCCCCCCCHHHHHHHHCCCCCCEE
ILDPSVRGSINVRSYDLLNERQYYQFFLNVLEVYGFATVEMENGIVKVVKAKDAKTAAIP
EECCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHCEEEEEECCCEEEEEEECCCCEEEEE
VVDDGTTYIGDQMVTRVVPVTNVSVRELAPLLRQLNDNAGGGNVVHYDPSNVLMITGRAA
EECCCCCHHCHHHHHHEECCCCCCHHHHHHHHHHHCCCCCCCCEEEECCCCEEEEECCHH
VVNRLVEIVNRVDKAGDQEVDIIKLKYASALEMVKIVDAIQGSSSGAKNISSSVLQPKLV
HHHHHHHHHHHHHHCCCCCEEEEEEEHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCHHC
ADERTNSVIISGEPKSRSRIVKLIKSLDAELLNEGNTQVFYLKYASAQEVVDVLKGVSKS
CCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCHHHHHHHHHHHHHH
IDSPQGNAAGQSGSAQGGLSIEAHEGTNAIVVSAQPALMSSLTSIIRQLDIRRAQVLVEA
CCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHH
IIVEVSEGDGINLNVQWGTTNGGTQFQDSAVTTGNIVAGTQDNDAAISAIGNISGGIAGY
HHEEECCCCCEEEEEEECCCCCCCCCCCCCEECCCEEECCCCCCHHHHHHCCCCCCEEEE
IGSNWGVVLQALSSATTSNILATPSLTTLDNQEASFIVGDEVPVLTGSTSSATNDNPFQT
ECCCHHHHHHHHHHHHCCCEEECCCEEECCCCCCEEEECCCCEEEECCCCCCCCCCCHHH
IERKEIGIKLKVTPQINEGDSVQMIIEQEVSDIKNDTSAVDVIFSTRSVKTTVLAKSGET
HHHHHCCEEEEECCCCCCCCCEEEEHHHHHHHHCCCCCEEEEEEECCCEEEEEEECCCCE
IVIGGLIDETVKETVQKVPLLGDIPLLGFLFRSTQSSTEKRNLMIFLRATIIRDDQTMMN
EEECCHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCEEEEEEEEEEECCHHHHH
LSTRKYSLIRAVQEKQRDTGINLMPNATPPILPEWGQSYEINPDHFIKSESKIRKPTTEG
HHHHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCCCCCCCCHHHHCCCCHHHCCCCCCC
VN
CC
>Mature Secondary Structure
MNLFMIQKKLSKQLIFSLLVLLICAINAGRVSATEYSASFKNADINEFINIVGKNLNKTI
CCEEHHHHHHHHHHHHHHHHHHHHHCCCCCEECHHHCCCCCCCCHHHHHHHHCCCCCCEE
ILDPSVRGSINVRSYDLLNERQYYQFFLNVLEVYGFATVEMENGIVKVVKAKDAKTAAIP
EECCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHCEEEEEECCCEEEEEEECCCCEEEEE
VVDDGTTYIGDQMVTRVVPVTNVSVRELAPLLRQLNDNAGGGNVVHYDPSNVLMITGRAA
EECCCCCHHCHHHHHHEECCCCCCHHHHHHHHHHHCCCCCCCCEEEECCCCEEEEECCHH
VVNRLVEIVNRVDKAGDQEVDIIKLKYASALEMVKIVDAIQGSSSGAKNISSSVLQPKLV
HHHHHHHHHHHHHHCCCCCEEEEEEEHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCHHC
ADERTNSVIISGEPKSRSRIVKLIKSLDAELLNEGNTQVFYLKYASAQEVVDVLKGVSKS
CCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCHHHHHHHHHHHHHH
IDSPQGNAAGQSGSAQGGLSIEAHEGTNAIVVSAQPALMSSLTSIIRQLDIRRAQVLVEA
CCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHH
IIVEVSEGDGINLNVQWGTTNGGTQFQDSAVTTGNIVAGTQDNDAAISAIGNISGGIAGY
HHEEECCCCCEEEEEEECCCCCCCCCCCCCEECCCEEECCCCCCHHHHHHCCCCCCEEEE
IGSNWGVVLQALSSATTSNILATPSLTTLDNQEASFIVGDEVPVLTGSTSSATNDNPFQT
ECCCHHHHHHHHHHHHCCCEEECCCEEECCCCCCEEEECCCCEEEECCCCCCCCCCCHHH
IERKEIGIKLKVTPQINEGDSVQMIIEQEVSDIKNDTSAVDVIFSTRSVKTTVLAKSGET
HHHHHCCEEEEECCCCCCCCCEEEEHHHHHHHHCCCCCEEEEEEECCCEEEEEEECCCCE
IVIGGLIDETVKETVQKVPLLGDIPLLGFLFRSTQSSTEKRNLMIFLRATIIRDDQTMMN
EEECCHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCEEEEEEEEEEECCHHHHH
LSTRKYSLIRAVQEKQRDTGINLMPNATPPILPEWGQSYEINPDHFIKSESKIRKPTTEG
HHHHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCCCCCCCCHHHHCCCCHHHCCCCCCC
VN
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1640836 [H]