Click here to switch to the map view.

The map label for this gene is hslR [H]

Identifier: 119943888

GI number: 119943888

Start: 127724

End: 128128

Strand: Reverse

Name: hslR [H]

Synonym: Ping_0095

Alternate gene names: 119943888

Gene position: 128128-127724 (Counterclockwise)

Preceding gene: 119943904

Following gene: 119943887

Centisome position: 2.81

GC content: 40.49

Gene sequence:

>405_bases
ATGACTGATAAAAAGATTCGTTTAGATAAGTGGTTATGGGCTGCCCGTTTTTACAAAACACGCAGCACGGCGCGAGAGAT
GATCCAGGGCGGCAAAGTACGCTTTAATGGACAACGTGCTAAAGCGAGTAAAATAGTAGAACTTGGTGCAGTATTATCAA
TCCGTCAAGGCGAGATGATAAAACACGTTTCAGTCGAAATTTTATCTGAGCAACGCCGCGGCGCACCTATTGCCGAAACC
TTATATAAAGAAACAAGCGACAGTATAAAAAAACGTGAGGAACACCAAATATTACGCAAACTAAGTTTACAAAATGCACC
GCATCCTAATAAAAAACCAGATAAAAAACAGCGTAGAGAGTTAATCCAAGCCAAAATTGAGCGTAACACAGCTAACTTCG
ATTAA

Upstream 100 bases:

>100_bases
CAATAAGTAAGATATGGTTTATTTATTGAGAATAGGCAAAAAAATCATGGTGAAAAATGCTAATTTGTTATACTCAAGAT
TTATCGATAGAGGTTGAAAA

Downstream 100 bases:

>100_bases
TATTATACAGCTATTTGTGAACACTAATAAACCCACAGCATAAAACCAGCACAACAGTGCAGAGAGTAAAAAATCATGAA
TGACCAACTACAACGCTTTA

Product: RNA-binding S4 domain-containing protein

Products: NA

Alternate protein names: HSP15 [H]

Number of amino acids: Translated: 134; Mature: 133

Protein sequence:

>134_residues
MTDKKIRLDKWLWAARFYKTRSTAREMIQGGKVRFNGQRAKASKIVELGAVLSIRQGEMIKHVSVEILSEQRRGAPIAET
LYKETSDSIKKREEHQILRKLSLQNAPHPNKKPDKKQRRELIQAKIERNTANFD

Sequences:

>Translated_134_residues
MTDKKIRLDKWLWAARFYKTRSTAREMIQGGKVRFNGQRAKASKIVELGAVLSIRQGEMIKHVSVEILSEQRRGAPIAET
LYKETSDSIKKREEHQILRKLSLQNAPHPNKKPDKKQRRELIQAKIERNTANFD
>Mature_133_residues
TDKKIRLDKWLWAARFYKTRSTAREMIQGGKVRFNGQRAKASKIVELGAVLSIRQGEMIKHVSVEILSEQRRGAPIAETL
YKETSDSIKKREEHQILRKLSLQNAPHPNKKPDKKQRRELIQAKIERNTANFD

Specific function: Involved in the recycling of free 50S ribosomal subunits that still carry a nascent chain. Binds RNA more specifically than DNA. Binds with very high affinity to the free 50S ribosomal subunit. Does not bind it when it is part of the 70S ribosome [H]

COG id: COG1188

COG function: function code J; Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789803, Length=121, Percent_Identity=57.8512396694215, Blast_Score=148, Evalue=1e-37,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002942 [H]

Pfam domain/function: PF01479 S4 [H]

EC number: NA

Molecular weight: Translated: 15608; Mature: 15477

Theoretical pI: Translated: 11.13; Mature: 11.13

Prosite motif: PS50889 S4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDKKIRLDKWLWAARFYKTRSTAREMIQGGKVRFNGQRAKASKIVELGAVLSIRQGEMI
CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCHHHHHHHHHHHHHHHHHCCHHH
KHVSVEILSEQRRGAPIAETLYKETSDSIKKREEHQILRKLSLQNAPHPNKKPDKKQRRE
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHH
LIQAKIERNTANFD
HHHHHHHHCCCCCC
>Mature Secondary Structure 
TDKKIRLDKWLWAARFYKTRSTAREMIQGGKVRFNGQRAKASKIVELGAVLSIRQGEMI
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCHHHHHHHHHHHHHHHHHCCHHH
KHVSVEILSEQRRGAPIAETLYKETSDSIKKREEHQILRKLSLQNAPHPNKKPDKKQRRE
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHH
LIQAKIERNTANFD
HHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]