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The map label for this gene is rimN

Identifier: 119943865

GI number: 119943865

Start: 100251

End: 100826

Strand: Reverse

Name: rimN

Synonym: Ping_0072

Alternate gene names: 119943865

Gene position: 100826-100251 (Counterclockwise)

Preceding gene: 119943866

Following gene: 119943864

Centisome position: 2.21

GC content: 39.41

Gene sequence:

>576_bases
TTGTTACTTTTGTTGAAACAAAGTGAATTAAATGACGCCCTGAAGATACTTAAATCTCAAGGCGTTATTGCATACCCCAC
TGAGTCTGTTTTTGGATTAGGGTGCGATCCTGACTGCGAAGCTGCCATTCAAAAAATTCTTTTATTAAAACAACGCCCCG
CTTATAAGGGATTGATTTTAATAGCCGCCAGTATTGAGCAATTAGAAAAATATGCTGATTTTTCTTTATTAACTGCTGCG
CAACTGACAGTGATAAAAAAAACATGGCCAGGCCCAATTACCTGGATTGTACCTTCACAAAAAAACCTTTCAAAATTGAT
AAGTGGTGACTTTGAAAGCGTTGCGGTAAGAGTGACCGCTCACCCTATCGTTAGGCAGATATGTCTGGCATTTGATAAAC
CAATCATCTCGACCAGCGCCAATTTATCCAGTTTAGAAGCCGCCTTAAGTAGCCAGCAAGTTAATAAAATGTTCAAAAGT
AATACCTTATTGAACTTAGTTATCGATGCCCCTGTTTCTGGGCTATCAACCCCAACACAAATTTTTCATGCATCGACTGG
AAAACGGTTGCGATAG

Upstream 100 bases:

>100_bases
AGCTGGCAAAACGCGTCAAAGAAAATCGTGCTGAAAATGCGCAAGCTGTTATTGCAAAAGATGCTGCATTACAGCTTAAA
TTAGCAAGCCTATAACGGAT

Downstream 100 bases:

>100_bases
CTAACTGTCTTGTGCACGGTAAATTTTCACTGGTAATTTTAAAATGTGAAATTATCTGTTATTTAAAAATCATCAACTAT
TTTGGAGTCCACATGGATAA

Product: ribosome maturation factor

Products: NA

Alternate protein names: t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN

Number of amino acids: Translated: 191; Mature: 191

Protein sequence:

>191_residues
MLLLLKQSELNDALKILKSQGVIAYPTESVFGLGCDPDCEAAIQKILLLKQRPAYKGLILIAASIEQLEKYADFSLLTAA
QLTVIKKTWPGPITWIVPSQKNLSKLISGDFESVAVRVTAHPIVRQICLAFDKPIISTSANLSSLEAALSSQQVNKMFKS
NTLLNLVIDAPVSGLSTPTQIFHASTGKRLR

Sequences:

>Translated_191_residues
MLLLLKQSELNDALKILKSQGVIAYPTESVFGLGCDPDCEAAIQKILLLKQRPAYKGLILIAASIEQLEKYADFSLLTAA
QLTVIKKTWPGPITWIVPSQKNLSKLISGDFESVAVRVTAHPIVRQICLAFDKPIISTSANLSSLEAALSSQQVNKMFKS
NTLLNLVIDAPVSGLSTPTQIFHASTGKRLR
>Mature_191_residues
MLLLLKQSELNDALKILKSQGVIAYPTESVFGLGCDPDCEAAIQKILLLKQRPAYKGLILIAASIEQLEKYADFSLLTAA
QLTVIKKTWPGPITWIVPSQKNLSKLISGDFESVAVRVTAHPIVRQICLAFDKPIISTSANLSSLEAALSSQQVNKMFKS
NTLLNLVIDAPVSGLSTPTQIFHASTGKRLR

Specific function: Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine

COG id: COG0009

COG function: function code J; Putative translation factor (SUA5)

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 YrdC-like domain

Homologues:

Organism=Escherichia coli, GI2367210, Length=187, Percent_Identity=43.8502673796791, Blast_Score=165, Evalue=2e-42,
Organism=Escherichia coli, GI87081864, Length=184, Percent_Identity=26.6304347826087, Blast_Score=72, Evalue=2e-14,
Organism=Saccharomyces cerevisiae, GI6321269, Length=153, Percent_Identity=30.718954248366, Blast_Score=72, Evalue=6e-14,
Organism=Drosophila melanogaster, GI78707274, Length=172, Percent_Identity=30.8139534883721, Blast_Score=73, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RIMN_PSYIN (A1SR31)

Other databases:

- EMBL:   CP000510
- RefSeq:   YP_941545.1
- ProteinModelPortal:   A1SR31
- SMR:   A1SR31
- STRING:   A1SR31
- GeneID:   4626626
- GenomeReviews:   CP000510_GR
- KEGG:   pin:Ping_0072
- eggNOG:   COG0009
- HOGENOM:   HBG738264
- OMA:   FGLGCNP
- PhylomeDB:   A1SR31
- BioCyc:   PING357804:PING_0072-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_01852
- InterPro:   IPR017945
- InterPro:   IPR006070
- Gene3D:   G3DSA:3.90.870.10

Pfam domain/function: PF01300 Sua5_yciO_yrdC; SSF55821 DHBP_synth_RibB-like_a/b_dom

EC number: NA

Molecular weight: Translated: 20773; Mature: 20773

Theoretical pI: Translated: 9.76; Mature: 9.76

Prosite motif: PS51163 YRDC; PS00012 PHOSPHOPANTETHEINE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLLLLKQSELNDALKILKSQGVIAYPTESVFGLGCDPDCEAAIQKILLLKQRPAYKGLIL
CEEEEECHHHHHHHHHHHHCCEEEECCCCEEECCCCCCHHHHHHHHHHHHCCCCCCCCEE
IAASIEQLEKYADFSLLTAAQLTVIKKTWPGPITWIVPSQKNLSKLISGDFESVAVRVTA
EHHHHHHHHHHHCHHHHHHHHHHEEEECCCCCEEEEECCHHHHHHHHCCCCHHEEEEEEH
HPIVRQICLAFDKPIISTSANLSSLEAALSSQQVNKMFKSNTLLNLVIDAPVSGLSTPTQ
HHHHHHHHHHHCCCHHCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHH
IFHASTGKRLR
HEECCCCCCCC
>Mature Secondary Structure
MLLLLKQSELNDALKILKSQGVIAYPTESVFGLGCDPDCEAAIQKILLLKQRPAYKGLIL
CEEEEECHHHHHHHHHHHHCCEEEECCCCEEECCCCCCHHHHHHHHHHHHCCCCCCCCEE
IAASIEQLEKYADFSLLTAAQLTVIKKTWPGPITWIVPSQKNLSKLISGDFESVAVRVTA
EHHHHHHHHHHHCHHHHHHHHHHEEEECCCCCEEEEECCHHHHHHHHCCCCHHEEEEEEH
HPIVRQICLAFDKPIISTSANLSSLEAALSSQQVNKMFKSNTLLNLVIDAPVSGLSTPTQ
HHHHHHHHHHHCCCHHCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHH
IFHASTGKRLR
HEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA