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The map label for this gene is ydeL [H]

Identifier: 119943839

GI number: 119943839

Start: 66314

End: 67786

Strand: Reverse

Name: ydeL [H]

Synonym: Ping_0046

Alternate gene names: 119943839

Gene position: 67786-66314 (Counterclockwise)

Preceding gene: 119943843

Following gene: 119943838

Centisome position: 1.49

GC content: 42.7

Gene sequence:

>1473_bases
ATGGCTGATTTTTTAATAAATATTGAGCTCCATCAAAACAGCACTTATCAGCAACAAATCCGTGAAAAATTAGTACAGCT
GATCACTCAAGACACCTTTGGTGACAAGCCTCTCCCCTCCGGCCGGAAGATGGCTGAACTGCTTGGCGTATCAAGAAATA
CCGTTGTATTGGTCTACGAAAGCCTGGTTGATGAAGGTTATCTTGTTGCTCGTGAACGTTGTGGTTTTTTTGTTGATCCC
GATTTATCCATGGAGCAGCTCCCCAAGACGGTGCAACTTAACCCTAAAAAGATTTCTCGTCAGCCAAATTGGTGCGAGCG
ATTACAAAAAAAACCCAGCAAGCTATCCACACTGAACAAAGATGAAAATTGGATAAAGTACACTTATCCCTTTATTTATG
GACATATAGATGTCAATGAATTCCCCCTTTATCAATGGCGAGAGTGTTCTCGGATCGCGGAAAGCAAAGGTAAATTGCAT
GAATGGGTAGAAGGTTTTATTGATATGGATGACCCGCAGCTGGTTTCGCAGATCCGCCAGCAAATTTTATCCAAACGTGG
CATCAGTGCTAAGACAGATGAAGTATTAATCACTCTGGGCACTCAAAACTCGCTGTTTTTATTAACCAGCTTATTAGCTG
ATAAGTCAGTCACTTTTGGTGTCGAAAATCCGGGTTATGCCAACCTACGACATGTTATCTCATTATGTGATAGTCCCGTT
AAAGCGCTTAAAATTGATCATCAAGGTGTACAGGTAGGCGAACAGCTCAAAGCTTGTGATTATGTCTGCGTGACACCCAG
CCATCAATACCCAACCACGGTAACAATGACAATAGAGCGCCGCAAAGCATTGCTTGAGCAAGCATGTAAAGATGACTTTA
TTGTTATTGAAGATGACTACGAAAGTGAAGTTAATTTTATAGAAAAGCCACTGCCGGCTCTGAAAAGTTTTGATCAGGAC
GGTCGAGTCATTTATACGGGCAGTTTATCCAAGTCACTCTCGCCAGGAATACGGATAGGTTATTTGGTTGCAGACAGTTC
ATTAATTACTGAACTGCGTAAATTGCGCGCCTTGCATTACCGTCATCCGCCATCCAATAACCAGCGCATTACAGCGTTAT
TTCTCAGCCAGGGTTATTATGACAGCCATATTCGCCGGATGCGTCAATCCTATGAAAAAAAGTGGCTACTGATGCAACAA
GGCATTGAGCGCCATCTCGGTGACTGCGAGATCCACTCTACCGCGGGCAGTTTCTGTTTCTGGATTGGTTTACCGGCAGG
TATTAACAGTCATTTATTAGTCGATATTGCAGCCGAACAGGGCATTTTAGTCGAATCTGGCGATAGTCTTTTTATGCAGG
AAAATGCACCTGAAAATTATATTAGACTTGGATTTTCAGCGATTAGCGGCGACAAGATTTTACCAGGGTTAGCCATTTTG
GGAGAGCTGATTAACACACTGAAGAATAAATGA

Upstream 100 bases:

>100_bases
GCTTAATAATAAAAGAGAAGGCTTACTGTTATCACGGAGAAATAAAAACATATGCAAAACACATGCAAAATACACTCCAA
TATTTTATACAGGTGGTCTA

Downstream 100 bases:

>100_bases
TTTATCCATCTCATTCATAAAATAGACTGTATTTAATAGACAAACTTAATCTGTTAACTCAAAGACCTTCTTTATTTTTT
ACCATACACTAAATTCAAAA

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 490; Mature: 489

Protein sequence:

>490_residues
MADFLINIELHQNSTYQQQIREKLVQLITQDTFGDKPLPSGRKMAELLGVSRNTVVLVYESLVDEGYLVARERCGFFVDP
DLSMEQLPKTVQLNPKKISRQPNWCERLQKKPSKLSTLNKDENWIKYTYPFIYGHIDVNEFPLYQWRECSRIAESKGKLH
EWVEGFIDMDDPQLVSQIRQQILSKRGISAKTDEVLITLGTQNSLFLLTSLLADKSVTFGVENPGYANLRHVISLCDSPV
KALKIDHQGVQVGEQLKACDYVCVTPSHQYPTTVTMTIERRKALLEQACKDDFIVIEDDYESEVNFIEKPLPALKSFDQD
GRVIYTGSLSKSLSPGIRIGYLVADSSLITELRKLRALHYRHPPSNNQRITALFLSQGYYDSHIRRMRQSYEKKWLLMQQ
GIERHLGDCEIHSTAGSFCFWIGLPAGINSHLLVDIAAEQGILVESGDSLFMQENAPENYIRLGFSAISGDKILPGLAIL
GELINTLKNK

Sequences:

>Translated_490_residues
MADFLINIELHQNSTYQQQIREKLVQLITQDTFGDKPLPSGRKMAELLGVSRNTVVLVYESLVDEGYLVARERCGFFVDP
DLSMEQLPKTVQLNPKKISRQPNWCERLQKKPSKLSTLNKDENWIKYTYPFIYGHIDVNEFPLYQWRECSRIAESKGKLH
EWVEGFIDMDDPQLVSQIRQQILSKRGISAKTDEVLITLGTQNSLFLLTSLLADKSVTFGVENPGYANLRHVISLCDSPV
KALKIDHQGVQVGEQLKACDYVCVTPSHQYPTTVTMTIERRKALLEQACKDDFIVIEDDYESEVNFIEKPLPALKSFDQD
GRVIYTGSLSKSLSPGIRIGYLVADSSLITELRKLRALHYRHPPSNNQRITALFLSQGYYDSHIRRMRQSYEKKWLLMQQ
GIERHLGDCEIHSTAGSFCFWIGLPAGINSHLLVDIAAEQGILVESGDSLFMQENAPENYIRLGFSAISGDKILPGLAIL
GELINTLKNK
>Mature_489_residues
ADFLINIELHQNSTYQQQIREKLVQLITQDTFGDKPLPSGRKMAELLGVSRNTVVLVYESLVDEGYLVARERCGFFVDPD
LSMEQLPKTVQLNPKKISRQPNWCERLQKKPSKLSTLNKDENWIKYTYPFIYGHIDVNEFPLYQWRECSRIAESKGKLHE
WVEGFIDMDDPQLVSQIRQQILSKRGISAKTDEVLITLGTQNSLFLLTSLLADKSVTFGVENPGYANLRHVISLCDSPVK
ALKIDHQGVQVGEQLKACDYVCVTPSHQYPTTVTMTIERRKALLEQACKDDFIVIEDDYESEVNFIEKPLPALKSFDQDG
RVIYTGSLSKSLSPGIRIGYLVADSSLITELRKLRALHYRHPPSNNQRITALFLSQGYYDSHIRRMRQSYEKKWLLMQQG
IERHLGDCEIHSTAGSFCFWIGLPAGINSHLLVDIAAEQGILVESGDSLFMQENAPENYIRLGFSAISGDKILPGLAILG
ELINTLKNK

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Homo sapiens, GI7705897, Length=237, Percent_Identity=29.957805907173, Blast_Score=102, Evalue=8e-22,
Organism=Homo sapiens, GI33469970, Length=237, Percent_Identity=29.957805907173, Blast_Score=102, Evalue=8e-22,
Organism=Escherichia coli, GI1787710, Length=491, Percent_Identity=26.6802443991853, Blast_Score=122, Evalue=4e-29,
Organism=Escherichia coli, GI1790797, Length=497, Percent_Identity=24.748490945674, Blast_Score=116, Evalue=4e-27,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR000524
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00155 Aminotran_1_2; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 55658; Mature: 55526

Theoretical pI: Translated: 6.65; Mature: 6.65

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADFLINIELHQNSTYQQQIREKLVQLITQDTFGDKPLPSGRKMAELLGVSRNTVVLVYE
CCCEEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCEEEEEEH
SLVDEGYLVARERCGFFVDPDLSMEQLPKTVQLNPKKISRQPNWCERLQKKPSKLSTLNK
HHHCCCEEEEHHHCCEEECCCCCHHHCCCCEECCHHHHCCCCHHHHHHHCCCHHHHCCCC
DENWIKYTYPFIYGHIDVNEFPLYQWRECSRIAESKGKLHEWVEGFIDMDDPQLVSQIRQ
CCCEEEEEEEEEEEEEECCCCCCHHHHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHH
QILSKRGISAKTDEVLITLGTQNSLFLLTSLLADKSVTFGVENPGYANLRHVISLCDSPV
HHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHCCCEEECCCCCCHHHHHHHHHHHCCCH
KALKIDHQGVQVGEQLKACDYVCVTPSHQYPTTVTMTIERRKALLEQACKDDFIVIEDDY
HHEEECCCHHHHHHHHHHCCEEEECCCCCCCCEEEEEEHHHHHHHHHHCCCCEEEEECCC
ESEVNFIEKPLPALKSFDQDGRVIYTGSLSKSLSPGIRIGYLVADSSLITELRKLRALHY
CHHHHHHHCCCHHHHCCCCCCCEEEECCCCCCCCCCCEEEEEEECHHHHHHHHHHHHHHC
RHPPSNNQRITALFLSQGYYDSHIRRMRQSYEKKWLLMQQGIERHLGDCEIHSTAGSFCF
CCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCEEE
WIGLPAGINSHLLVDIAAEQGILVESGDSLFMQENAPENYIRLGFSAISGDKILPGLAIL
EEECCCCCCCCEEEEEECCCCEEEECCCCEEEECCCCCCHHEEEHHHCCCCCCCHHHHHH
GELINTLKNK
HHHHHHHCCC
>Mature Secondary Structure 
ADFLINIELHQNSTYQQQIREKLVQLITQDTFGDKPLPSGRKMAELLGVSRNTVVLVYE
CCEEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCEEEEEEH
SLVDEGYLVARERCGFFVDPDLSMEQLPKTVQLNPKKISRQPNWCERLQKKPSKLSTLNK
HHHCCCEEEEHHHCCEEECCCCCHHHCCCCEECCHHHHCCCCHHHHHHHCCCHHHHCCCC
DENWIKYTYPFIYGHIDVNEFPLYQWRECSRIAESKGKLHEWVEGFIDMDDPQLVSQIRQ
CCCEEEEEEEEEEEEEECCCCCCHHHHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHH
QILSKRGISAKTDEVLITLGTQNSLFLLTSLLADKSVTFGVENPGYANLRHVISLCDSPV
HHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHCCCEEECCCCCCHHHHHHHHHHHCCCH
KALKIDHQGVQVGEQLKACDYVCVTPSHQYPTTVTMTIERRKALLEQACKDDFIVIEDDY
HHEEECCCHHHHHHHHHHCCEEEECCCCCCCCEEEEEEHHHHHHHHHHCCCCEEEEECCC
ESEVNFIEKPLPALKSFDQDGRVIYTGSLSKSLSPGIRIGYLVADSSLITELRKLRALHY
CHHHHHHHCCCHHHHCCCCCCCEEEECCCCCCCCCCCEEEEEEECHHHHHHHHHHHHHHC
RHPPSNNQRITALFLSQGYYDSHIRRMRQSYEKKWLLMQQGIERHLGDCEIHSTAGSFCF
CCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCEEE
WIGLPAGINSHLLVDIAAEQGILVESGDSLFMQENAPENYIRLGFSAISGDKILPGLAIL
EEECCCCCCCCEEEEEECCCCEEEECCCCEEEECCCCCCHHEEEHHHCCCCCCCHHHHHH
GELINTLKNK
HHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]