| Definition | Psychromonas ingrahamii 37, complete genome. |
|---|---|
| Accession | NC_008709 |
| Length | 4,559,598 |
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The map label for this gene is yjbI [C]
Identifier: 119943823
GI number: 119943823
Start: 43781
End: 46711
Strand: Direct
Name: yjbI [C]
Synonym: Ping_0029
Alternate gene names: 119943823
Gene position: 43781-46711 (Clockwise)
Preceding gene: 119943822
Following gene: 119943824
Centisome position: 0.96
GC content: 42.89
Gene sequence:
>2931_bases ATGAAAAGTATTAAAAGCCTGCAGGCTTCATTATTAACCAATACTTTTAAGTATCAGCAGAAGCACTTTTTTGTTGCATC GACTTTATGGGGCTTCTATCTCGATTCGGGTGAGGCTGTCCTGGAGCAGACATTATGGCCCATTATCGCAGCTAATCTGG GTAAAGATAGTCTGTTTGATGAGGCGTTCAAGAAAGACGCCAGTGAATTTGTGGTGTTTGCCGATGCCTTTGCACCTCAG CTGCAACCCGCTCCTCGAGTGGATGTGTCAGTTAGTTTGGCCGAGATTACAAAAATCTTAAATGTCTATGGTGAGCGCTA CTGGCAGGGTTTTGGGCCCTCTCCGGCAGATCCTTTTATGCAAATGCCGCTCAGTTATGAGCATGCCTATGGCGGACAAG CGCACCTTTATAATAAAGACGGAAAAGGCCTGCCCGGCAATGATTCGAATGAGGTTTTACGCTTTTTAGCCAACATTGAG CACCCTGATTTTCCTGTCATTTCGAAAAAAATTCCGGATAATAAAAGCGCCTATACCCCCCAGGGTTTTGCTGCTATTAA TAGCGAGTGGCCACAGAGAAAAAATTTATATGGCACCTTTGATGATAATTATCTGCAAAACCATATGCCGGGCTTAGCGC CGGATATTAATTGGGATTATTTTCACACTGCGCCGCCGGATCAACGCTTTGACCGTTATTTAACCGGCAATGAACCCTTT TGCATAACCAATATGCATGAAACCATGGCTGAAATTAAAGGGAACTTACCCGGGGTTGTCGGTCGCTGTTTTATCGAGCA GGAACTCCCCTTAAACGCGCTTGAGCAAGGAGAGTTAGCTCAGTATTCAGATGCCCAAAAACGTGATGATAAATTGGTGC TTTTTAAGGAGATCCCCCTAAATCTAGACACGGTTTATTTTTTCCCCAATGACAATATCGGCATTGTTGTGCACCGCGGC ACGATCGAAATTAATCATCCTCAGGCTAAAGATATTAAAAAGCTCTTAGTGGCGCATCAAAGTTTAACTGAACCGGCTAA ACCCAGCGCTTTTTATCAGGATCAACTGCAGCTGCGCTGTGACCCTGAAGACGGGTTTAAGTATATGATGTATTCGGCGC CTTTAATCCCTGAAGATGTGACTTGCGGTTTTAAACAGCTTCTAGGCGATGAAGAATATAAGCAGGTCATGGGCGATAAT CTGAGCGCCTTTGCTGAGGGAAAAAAACAGCAGGCCGAGCAGGAAATGGATGAGGCTATCGACAAACAAGTCGCGGAATT AAGAGCCAATGGCATGGACAAACAAGCCGATGAGTTATTAGATAAAATAAAAAATCCGCCTCAGGATATTGAATTGCCCG AAGATGCCAAAAAACTGCAGGCCTTAACCGATAAAATATTACCGGGTATAAGCGCTATGAAAGAGGCACCGAAACTTGAT GATCTTGACCTGACCAAGCTAAATCTCAAAGCCATGGATGAAGTGCAGGCACATATGGAGGCGATGGCCGAAAAACAAAA AAAAGAAGCGTTATTAAAGGTCGAGCAGCAACTTGACGAATTAAAGCAGCAAGCCGCGCAGCAGCCTGAAATGGCAGAGC AGCTCGACCCGTCAATAAAACAGCTTGAAGAGATGTTGGCAAGTATTGATGCTATTCCGGTCTTAACCCGTCCCGATACT GTTGAGCAAGATACTCAGCTAAGTGCTCAGCTTGCACAAGCCGCAGAGCAGTTGACCGAGCAGAAAAAAATGATGGCGGA GCATAATATTGAGTTAAGCGCGGAGCAGCAACAGCAAATGACCGAGCTCGAGCAGCTGTTAGATAATAATGAAACGCTGT CGGCGCAAATGGCAGAGGCCAATGACTTTATTAATGACAGTTATTTAAAAGGGGCGCATTTTATAGCAGAGTCCAGCTCT CCCCATAAAGGTAAAGAGCCTGAGCTGGTGGCGGCGCTGTTAGATAGCTATAATGCAAAACAAGTGATCACCGCGAAAGA TTTCGCCTTTTGTAAACTAACGCAGCAGAAATTCAAACAAATAGATTTAAACCATGGTTTTTTTGAATACAGTGAATTAA CTCATATTGAATTTGAACAGGCTGATTTAACGGCCATTAATTTAGCTCATGCCAAATTATCGAATGTGAGCTTTGATAAC TGTGCGATTGAAGGGGCAAATTTAGGCGCGGCAGAGCTAACCGCTTGCCAGTTTAAAAATATGAAGCTGATTGAGATTAC TTTGGCGCATTCGAGTTTAATTGATTGTGAATTTACCGACTGTGAGTTTGGTGAGCGCATGGATATGCTCCTGGAAACCA AGCTGCTCCGTTGTAAATTTGTAAATTGCACCTTTTTGAAACTGAACTTTATTGAACTGGATTTAACCGGCTGTGAGTTT ATTGATTGTGATTTAAGCGAATCTAATTTTATTAAACCTATTTTGACCGATGCTAGCTTTACAGGCTCGACCTTAAATGG CACCAACTTTGTAATAGCAGAGCTTAATAACAGCTGTTTTGAACGGGCAAGAATGAAAAATACCCGTTTTGTTGGCGGGT GTTTATTAAATGAGGCCTGTTTTAATTTTGCCACCATTAATGAAACCAATTTACGGGATTGCCAGTTAAACAACTGTGAT TTTTCCGATGCGGATATCAGTAAAAGCGATTTTGGTGAATCGAGTATTAAAAACAGCCAATTCAACTGCACTATTGCCAG GCAAGTACAGTTTATCGACAGTAACTTGAATGGCAGCCAGTTTAAAAAAGCGGATTTTATGGAGGCTAATTTAATGCAGG CGGATATTCGCGGCTGTAATTTTTCAGGCGCGAATCTTTATGGTGCCAGTTTTTTAAATGCCACTCTGGGCAGTACTTCA TTTTATGGCGCTATATTAGAAAACACCCTATTAAAAGACTGGAGACCCTAA
Upstream 100 bases:
>100_bases TAAATAAAAAGGATATAGAAGTAAACAAGAGTAGCATAAAAATAAACAGTACAGATATTATGCATCTTATTTTTTAACTA ATTGGATATTCATTTAAAGA
Downstream 100 bases:
>100_bases CGGATATGGCAAAGCAGACAAAACTTTCTAAACAAGCCTTACAAAATAGAATTAAAGGCTTAAGTGACGAACCGCCCGCG ATAAGTGAGATTGATTTTTC
Product: pentapeptide repeat-containing protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 976; Mature: 976
Protein sequence:
>976_residues MKSIKSLQASLLTNTFKYQQKHFFVASTLWGFYLDSGEAVLEQTLWPIIAANLGKDSLFDEAFKKDASEFVVFADAFAPQ LQPAPRVDVSVSLAEITKILNVYGERYWQGFGPSPADPFMQMPLSYEHAYGGQAHLYNKDGKGLPGNDSNEVLRFLANIE HPDFPVISKKIPDNKSAYTPQGFAAINSEWPQRKNLYGTFDDNYLQNHMPGLAPDINWDYFHTAPPDQRFDRYLTGNEPF CITNMHETMAEIKGNLPGVVGRCFIEQELPLNALEQGELAQYSDAQKRDDKLVLFKEIPLNLDTVYFFPNDNIGIVVHRG TIEINHPQAKDIKKLLVAHQSLTEPAKPSAFYQDQLQLRCDPEDGFKYMMYSAPLIPEDVTCGFKQLLGDEEYKQVMGDN LSAFAEGKKQQAEQEMDEAIDKQVAELRANGMDKQADELLDKIKNPPQDIELPEDAKKLQALTDKILPGISAMKEAPKLD DLDLTKLNLKAMDEVQAHMEAMAEKQKKEALLKVEQQLDELKQQAAQQPEMAEQLDPSIKQLEEMLASIDAIPVLTRPDT VEQDTQLSAQLAQAAEQLTEQKKMMAEHNIELSAEQQQQMTELEQLLDNNETLSAQMAEANDFINDSYLKGAHFIAESSS PHKGKEPELVAALLDSYNAKQVITAKDFAFCKLTQQKFKQIDLNHGFFEYSELTHIEFEQADLTAINLAHAKLSNVSFDN CAIEGANLGAAELTACQFKNMKLIEITLAHSSLIDCEFTDCEFGERMDMLLETKLLRCKFVNCTFLKLNFIELDLTGCEF IDCDLSESNFIKPILTDASFTGSTLNGTNFVIAELNNSCFERARMKNTRFVGGCLLNEACFNFATINETNLRDCQLNNCD FSDADISKSDFGESSIKNSQFNCTIARQVQFIDSNLNGSQFKKADFMEANLMQADIRGCNFSGANLYGASFLNATLGSTS FYGAILENTLLKDWRP
Sequences:
>Translated_976_residues MKSIKSLQASLLTNTFKYQQKHFFVASTLWGFYLDSGEAVLEQTLWPIIAANLGKDSLFDEAFKKDASEFVVFADAFAPQ LQPAPRVDVSVSLAEITKILNVYGERYWQGFGPSPADPFMQMPLSYEHAYGGQAHLYNKDGKGLPGNDSNEVLRFLANIE HPDFPVISKKIPDNKSAYTPQGFAAINSEWPQRKNLYGTFDDNYLQNHMPGLAPDINWDYFHTAPPDQRFDRYLTGNEPF CITNMHETMAEIKGNLPGVVGRCFIEQELPLNALEQGELAQYSDAQKRDDKLVLFKEIPLNLDTVYFFPNDNIGIVVHRG TIEINHPQAKDIKKLLVAHQSLTEPAKPSAFYQDQLQLRCDPEDGFKYMMYSAPLIPEDVTCGFKQLLGDEEYKQVMGDN LSAFAEGKKQQAEQEMDEAIDKQVAELRANGMDKQADELLDKIKNPPQDIELPEDAKKLQALTDKILPGISAMKEAPKLD DLDLTKLNLKAMDEVQAHMEAMAEKQKKEALLKVEQQLDELKQQAAQQPEMAEQLDPSIKQLEEMLASIDAIPVLTRPDT VEQDTQLSAQLAQAAEQLTEQKKMMAEHNIELSAEQQQQMTELEQLLDNNETLSAQMAEANDFINDSYLKGAHFIAESSS PHKGKEPELVAALLDSYNAKQVITAKDFAFCKLTQQKFKQIDLNHGFFEYSELTHIEFEQADLTAINLAHAKLSNVSFDN CAIEGANLGAAELTACQFKNMKLIEITLAHSSLIDCEFTDCEFGERMDMLLETKLLRCKFVNCTFLKLNFIELDLTGCEF IDCDLSESNFIKPILTDASFTGSTLNGTNFVIAELNNSCFERARMKNTRFVGGCLLNEACFNFATINETNLRDCQLNNCD FSDADISKSDFGESSIKNSQFNCTIARQVQFIDSNLNGSQFKKADFMEANLMQADIRGCNFSGANLYGASFLNATLGSTS FYGAILENTLLKDWRP >Mature_976_residues MKSIKSLQASLLTNTFKYQQKHFFVASTLWGFYLDSGEAVLEQTLWPIIAANLGKDSLFDEAFKKDASEFVVFADAFAPQ LQPAPRVDVSVSLAEITKILNVYGERYWQGFGPSPADPFMQMPLSYEHAYGGQAHLYNKDGKGLPGNDSNEVLRFLANIE HPDFPVISKKIPDNKSAYTPQGFAAINSEWPQRKNLYGTFDDNYLQNHMPGLAPDINWDYFHTAPPDQRFDRYLTGNEPF CITNMHETMAEIKGNLPGVVGRCFIEQELPLNALEQGELAQYSDAQKRDDKLVLFKEIPLNLDTVYFFPNDNIGIVVHRG TIEINHPQAKDIKKLLVAHQSLTEPAKPSAFYQDQLQLRCDPEDGFKYMMYSAPLIPEDVTCGFKQLLGDEEYKQVMGDN LSAFAEGKKQQAEQEMDEAIDKQVAELRANGMDKQADELLDKIKNPPQDIELPEDAKKLQALTDKILPGISAMKEAPKLD DLDLTKLNLKAMDEVQAHMEAMAEKQKKEALLKVEQQLDELKQQAAQQPEMAEQLDPSIKQLEEMLASIDAIPVLTRPDT VEQDTQLSAQLAQAAEQLTEQKKMMAEHNIELSAEQQQQMTELEQLLDNNETLSAQMAEANDFINDSYLKGAHFIAESSS PHKGKEPELVAALLDSYNAKQVITAKDFAFCKLTQQKFKQIDLNHGFFEYSELTHIEFEQADLTAINLAHAKLSNVSFDN CAIEGANLGAAELTACQFKNMKLIEITLAHSSLIDCEFTDCEFGERMDMLLETKLLRCKFVNCTFLKLNFIELDLTGCEF IDCDLSESNFIKPILTDASFTGSTLNGTNFVIAELNNSCFERARMKNTRFVGGCLLNEACFNFATINETNLRDCQLNNCD FSDADISKSDFGESSIKNSQFNCTIARQVQFIDSNLNGSQFKKADFMEANLMQADIRGCNFSGANLYGASFLNATLGSTS FYGAILENTLLKDWRP
Specific function: Unknown
COG id: COG5351
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 7 pentapeptide repeat domains [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001646 [H]
Pfam domain/function: PF00805 Pentapeptide [H]
EC number: NA
Molecular weight: Translated: 109614; Mature: 109614
Theoretical pI: Translated: 4.42; Mature: 4.42
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 4.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKSIKSLQASLLTNTFKYQQKHFFVASTLWGFYLDSGEAVLEQTLWPIIAANLGKDSLFD CCHHHHHHHHHHHHHHHHHHHHEEHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHH EAFKKDASEFVVFADAFAPQLQPAPRVDVSVSLAEITKILNVYGERYWQGFGPSPADPFM HHHHCCCHHEEEEECHHCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHCCCCCCCCCHHH QMPLSYEHAYGGQAHLYNKDGKGLPGNDSNEVLRFLANIEHPDFPVISKKIPDNKSAYTP HCCCCHHHCCCCCEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHCCCCCCCCCCCC QGFAAINSEWPQRKNLYGTFDDNYLQNHMPGLAPDINWDYFHTAPPDQRFDRYLTGNEPF CCCEECCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCEECCCCHHHHHHHCCCCCCE CITNMHETMAEIKGNLPGVVGRCFIEQELPLNALEQGELAQYSDAQKRDDKLVLFKEIPL EEECHHHHHHHHCCCCCCHHHHHHCCCCCCCCHHCCCCCHHHCCHHCCCCCEEEEEECCC NLDTVYFFPNDNIGIVVHRGTIEINHPQAKDIKKLLVAHQSLTEPAKPSAFYQDQLQLRC CCEEEEEECCCCEEEEEEECEEEECCCCHHHHHHHHHHHHHHCCCCCCCHHCCCCEEEEE DPEDGFKYMMYSAPLIPEDVTCGFKQLLGDEEYKQVMGDNLSAFAEGKKQQAEQEMDEAI CCCCCCEEEEEECCCCCCCCHHHHHHHHCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH DKQVAELRANGMDKQADELLDKIKNPPQDIELPEDAKKLQALTDKILPGISAMKEAPKLD HHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHCCCCC DLDLTKLNLKAMDEVQAHMEAMAEKQKKEALLKVEQQLDELKQQAAQQPEMAEQLDPSIK CCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCHHHH QLEEMLASIDAIPVLTRPDTVEQDTQLSAQLAQAAEQLTEQKKMMAEHNIELSAEQQQQM HHHHHHHHHCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH TELEQLLDNNETLSAQMAEANDFINDSYLKGAHFIAESSSPHKGKEPELVAALLDSYNAK HHHHHHHCCCCCHHHHHHHHHHHCCHHHHCCHHEEECCCCCCCCCCHHHHHHHHHCCCCC QVITAKDFAFCKLTQQKFKQIDLNHGFFEYSELTHIEFEQADLTAINLAHAKLSNVSFDN EEEEECCHHHHHHHHHHHHHCCCCCCEEECCCCEEEEECCCCCEEEEHHHHHHCCCCCCC CAIEGANLGAAELTACQFKNMKLIEITLAHSSLIDCEFTDCEFGERMDMLLETKLLRCKF EEEECCCCCHHHHHHHHHCCCEEEEEEEECCCEEECCCCCCCCHHHHHHHHHHHHHHEEE VNCTFLKLNFIELDLTGCEFIDCDLSESNFIKPILTDASFTGSTLNGTNFVIAELNNSCF CCEEEEEEEEEEEEECCCEEEECCCCCCCCCCHHCCCCCCCCCCCCCCEEEEEECCHHHH ERARMKNTRFVGGCLLNEACFNFATINETNLRDCQLNNCDFSDADISKSDFGESSIKNSQ HHHHHCCCCEEHHHHHHHHHHCEEECCCCCCCCCCCCCCCCCCCCCCHHCCCCHHCCCCC FNCTIARQVQFIDSNLNGSQFKKADFMEANLMQADIRGCNFSGANLYGASFLNATLGSTS CEEEEEEEEHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCH FYGAILENTLLKDWRP HHHHHHHHHHHHCCCC >Mature Secondary Structure MKSIKSLQASLLTNTFKYQQKHFFVASTLWGFYLDSGEAVLEQTLWPIIAANLGKDSLFD CCHHHHHHHHHHHHHHHHHHHHEEHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHH EAFKKDASEFVVFADAFAPQLQPAPRVDVSVSLAEITKILNVYGERYWQGFGPSPADPFM HHHHCCCHHEEEEECHHCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHCCCCCCCCCHHH QMPLSYEHAYGGQAHLYNKDGKGLPGNDSNEVLRFLANIEHPDFPVISKKIPDNKSAYTP HCCCCHHHCCCCCEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHCCCCCCCCCCCC QGFAAINSEWPQRKNLYGTFDDNYLQNHMPGLAPDINWDYFHTAPPDQRFDRYLTGNEPF CCCEECCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCEECCCCHHHHHHHCCCCCCE CITNMHETMAEIKGNLPGVVGRCFIEQELPLNALEQGELAQYSDAQKRDDKLVLFKEIPL EEECHHHHHHHHCCCCCCHHHHHHCCCCCCCCHHCCCCCHHHCCHHCCCCCEEEEEECCC NLDTVYFFPNDNIGIVVHRGTIEINHPQAKDIKKLLVAHQSLTEPAKPSAFYQDQLQLRC CCEEEEEECCCCEEEEEEECEEEECCCCHHHHHHHHHHHHHHCCCCCCCHHCCCCEEEEE DPEDGFKYMMYSAPLIPEDVTCGFKQLLGDEEYKQVMGDNLSAFAEGKKQQAEQEMDEAI CCCCCCEEEEEECCCCCCCCHHHHHHHHCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH DKQVAELRANGMDKQADELLDKIKNPPQDIELPEDAKKLQALTDKILPGISAMKEAPKLD HHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHCCCCC DLDLTKLNLKAMDEVQAHMEAMAEKQKKEALLKVEQQLDELKQQAAQQPEMAEQLDPSIK CCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCHHHH QLEEMLASIDAIPVLTRPDTVEQDTQLSAQLAQAAEQLTEQKKMMAEHNIELSAEQQQQM HHHHHHHHHCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH TELEQLLDNNETLSAQMAEANDFINDSYLKGAHFIAESSSPHKGKEPELVAALLDSYNAK HHHHHHHCCCCCHHHHHHHHHHHCCHHHHCCHHEEECCCCCCCCCCHHHHHHHHHCCCCC QVITAKDFAFCKLTQQKFKQIDLNHGFFEYSELTHIEFEQADLTAINLAHAKLSNVSFDN EEEEECCHHHHHHHHHHHHHCCCCCCEEECCCCEEEEECCCCCEEEEHHHHHHCCCCCCC CAIEGANLGAAELTACQFKNMKLIEITLAHSSLIDCEFTDCEFGERMDMLLETKLLRCKF EEEECCCCCHHHHHHHHHCCCEEEEEEEECCCEEECCCCCCCCHHHHHHHHHHHHHHEEE VNCTFLKLNFIELDLTGCEFIDCDLSESNFIKPILTDASFTGSTLNGTNFVIAELNNSCF CCEEEEEEEEEEEEECCCEEEECCCCCCCCCCHHCCCCCCCCCCCCCCEEEEEECCHHHH ERARMKNTRFVGGCLLNEACFNFATINETNLRDCQLNNCDFSDADISKSDFGESSIKNSQ HHHHHCCCCEEHHHHHHHHHHCEEECCCCCCCCCCCCCCCCCCCCCCHHCCCCHHCCCCC FNCTIARQVQFIDSNLNGSQFKKADFMEANLMQADIRGCNFSGANLYGASFLNATLGSTS CEEEEEEEEHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCH FYGAILENTLLKDWRP HHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8905231 [H]