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The map label for this gene is yxaF [H]

Identifier: 119871419

GI number: 119871419

Start: 5629540

End: 5630121

Strand: Direct

Name: yxaF [H]

Synonym: Mkms_5395

Alternate gene names: 119871419

Gene position: 5629540-5630121 (Clockwise)

Preceding gene: 119871417

Following gene: 119871420

Centisome position: 98.12

GC content: 68.38

Gene sequence:

>582_bases
ATGGCAGATCCGTCCACCCGCAGCCGGATCCTCGATGCGACGGCGGAGTTGTATCGCCGGCAGGGCATGCCCGCCACCGG
CCTCAAGCAGATCTCGGCCGCGGCGCAGGCGGCGTTCGGTTCGATCTACCACCACTTCCCCGGTGGCAAAGAGGCGATCA
GCGTGGAAGTCATTCGCCGCGAAGGCATCCGGTACGCCACGTTCGTCGGCGCGCAGTTGGCGCAGATCGACCCGCTCGAC
GGAATCCCCGAGTTGTTCGAGAAGGCGGGCAGGGATCTGGAGTCGCAGGACTACAGCGAAGCCTGTTCGATCGAGACGAT
CGCGCTGGAGGTGGCCAGCACCAACGAGCGGCTCCGGGTGGAGGCGGCGGAGGTGTTCCAGAGCTGGCTCGGCGGCCTCG
CGGCGTGGTTCGGGCAGCTCGACCTCACCGAGGCGGAGTGCCGCCGGTTGGCGATGATCACCCTGACGGCCCTCGAAGGC
GCCTTCGTCCTGTGCCGCACCCTGCGCTCGGTCGAACCCATTGTCTGCGCGGGGCACGGGGTCCGGGCGGCCGTGCACGC
GGCGGTTCGAAAGCCTGTCTAA

Upstream 100 bases:

>100_bases
GGGCAGATCCACGGAAAGCATGCCGTTCGCCTCCTAGATAGATCGTTCTACTTACCCGGACGATATGCTGTCGGAGCACG
ATGCGCAAGGAGGAGACGTC

Downstream 100 bases:

>100_bases
CGGGCATGTACCTCGTAACTTCCCCGCGGAAGCACCCGAGAAGAGGAGCACCCTGATGGCCGGTCGGACCGTCGAGTCGA
CATCGGTGTCGACACTGTTG

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 193; Mature: 192

Protein sequence:

>193_residues
MADPSTRSRILDATAELYRRQGMPATGLKQISAAAQAAFGSIYHHFPGGKEAISVEVIRREGIRYATFVGAQLAQIDPLD
GIPELFEKAGRDLESQDYSEACSIETIALEVASTNERLRVEAAEVFQSWLGGLAAWFGQLDLTEAECRRLAMITLTALEG
AFVLCRTLRSVEPIVCAGHGVRAAVHAAVRKPV

Sequences:

>Translated_193_residues
MADPSTRSRILDATAELYRRQGMPATGLKQISAAAQAAFGSIYHHFPGGKEAISVEVIRREGIRYATFVGAQLAQIDPLD
GIPELFEKAGRDLESQDYSEACSIETIALEVASTNERLRVEAAEVFQSWLGGLAAWFGQLDLTEAECRRLAMITLTALEG
AFVLCRTLRSVEPIVCAGHGVRAAVHAAVRKPV
>Mature_192_residues
ADPSTRSRILDATAELYRRQGMPATGLKQISAAAQAAFGSIYHHFPGGKEAISVEVIRREGIRYATFVGAQLAQIDPLDG
IPELFEKAGRDLESQDYSEACSIETIALEVASTNERLRVEAAEVFQSWLGGLAAWFGQLDLTEAECRRLAMITLTALEGA
FVLCRTLRSVEPIVCAGHGVRAAVHAAVRKPV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 20900; Mature: 20769

Theoretical pI: Translated: 5.69; Mature: 5.69

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADPSTRSRILDATAELYRRQGMPATGLKQISAAAQAAFGSIYHHFPGGKEAISVEVIRR
CCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
EGIRYATFVGAQLAQIDPLDGIPELFEKAGRDLESQDYSEACSIETIALEVASTNERLRV
CCCCHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCHHHHHCHHHEEEEEECCCCHHHH
EAAEVFQSWLGGLAAWFGQLDLTEAECRRLAMITLTALEGAFVLCRTLRSVEPIVCAGHG
HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCC
VRAAVHAAVRKPV
HHHHHHHHHHCCC
>Mature Secondary Structure 
ADPSTRSRILDATAELYRRQGMPATGLKQISAAAQAAFGSIYHHFPGGKEAISVEVIRR
CCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
EGIRYATFVGAQLAQIDPLDGIPELFEKAGRDLESQDYSEACSIETIALEVASTNERLRV
CCCCHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCHHHHHCHHHEEEEEECCCCHHHH
EAAEVFQSWLGGLAAWFGQLDLTEAECRRLAMITLTALEGAFVLCRTLRSVEPIVCAGHG
HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCC
VRAAVHAAVRKPV
HHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7584049; 9384377 [H]