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The map label for this gene is ydiU [C]

Identifier: 119871316

GI number: 119871316

Start: 5528463

End: 5529908

Strand: Direct

Name: ydiU [C]

Synonym: Mkms_5290

Alternate gene names: 119871316

Gene position: 5528463-5529908 (Clockwise)

Preceding gene: 119871314

Following gene: 119871320

Centisome position: 96.36

GC content: 69.85

Gene sequence:

>1446_bases
GTGACGAACCTCAGCCTGGACGGCCGTTTCGCGCGGGAACTGCCGGAGATGGCGGTCCGCTGGAAGGCCGAGGAGGCGCC
CGATCCCCGGCTGCTCGTGCTCAACGACGAGTTGGCGTCGGGTCTCGGGTTGGACGCCGACTGGCTGCGCTCCCCCGACG
GGGTACGGCTGCTGGTCGGCAACTCGGTTCCCGACGGCGCCACCCCGGTCGCCCAGGCCTATGCAGGCCATCAGTTCGGT
GGGTTCGCGCCGCGGCTGGGCGACGGCCGGGCGCTTCTGCTCGGTGAGCTCGTCGACGGTGACGGCCGGATGCGCGATGT
GCATCTCAAGGGGTCCGGGCACACCCCGTTCGCCCGCGCCGGCGACGGGTTGGCCGCGGTCGGCCCGATGCTGCGCGAAT
ACCTGGTCAGCGAGGCCATGCATGCCCTCGGCATCCCGACCACCCGGTCGCTGGCCGTGGTGGCGACCGGACGGCCGGTG
CGGCGTGAGAGCGTGCTCGACGGCGCGGTGCTGACCCGGGTGGCGAGCAGTCATCTGCGCGTCGGCAGCTTCCAGTACGC
CGCGGTGACCGGGGACACCGATCTGGTGCGCCGACTCGCCGGACACGCCATCGCCCGCCATCACCCCGAGGTTGCGGGGG
CGGCCGACCCGTATCTGGGTTTGTTCGAGGCGGTCTGTTCGGCCCAGGCGCAGTTGATCGCCCGCTGGATGCTCGTGGGG
TTCGTGCACGGCGTGATGAACACCGACAACATGACGATCTCGGGCGAGACCATCGACTACGGGCCGTGCGCGTTCATGGA
CGTCTACGACCCCGAGACGGTGTTCAGCTCGATCGACTCGTGGGGCCGCTACGCATACGGCAACCAGCCCTCGATCGCGG
CGTGGAACCTGGCACGCTTCGCCGAGACGCTGCTGCCCCTGTTCGACGACGACATCGACCGGGCGATCACGTTGGCGCAG
AACGCGCTCGGCGCTTTCGGCCGACACTACGAAGGCGCACTCACAGCCGGTATGCAGGCCAAACTCGGCCTGACCGGAGT
GGACGGGCCCGCTGTCGCCCCGCTGCTCGACGAGCTACTGAAACTGTTGCAGGACAACCACATCGACTTCACGTCGTTCT
TCCGCGCGCTCGGCCTCGCCGCCCGGGGCGACAACGAACCCGTGCGGGGGTTGTTCGTCGACCTCGCCGGTTTCGACGCG
TGGCTCGACAGTTGGCGCGCGCTGGGCCCCGACGGTGCCGCGATGGACCGGGTGAACCCGGTCTACATCCCGCGCAACCA
CCTCGTCGAGGAGGCGCTGACCGCGGCCGCCGCGGGCGATATGGAACCGTTCGAGACCCTGCTCGACGCGGTGACCGGGC
CGTTCGACGAACGGCCCGGTCTCCAGCGTTATGCGGAACCGGCTCCCGAGGCCTTCGGCAGGTACCGCACCTTCTGCGGG
ACCTGA

Upstream 100 bases:

>100_bases
ATCAGGGCGACGCGGCTGAATAGGCGCGCGTCACCGCTCGTCCGGTGTCCGTGTGCGGACTGCTCGGCTCCGTAGTCTGG
ATGAGGTGAGTGCCTCACCT

Downstream 100 bases:

>100_bases
GGCCTAGGGCGTGGTGGCGCAGCCGACGCCCGGGATGCACCCGGTGGCGCCGCCCGGACCGGCGGTGCCCGAAGATCCGC
CCGGGATCGCCCCCGTCGCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 481; Mature: 480

Protein sequence:

>481_residues
MTNLSLDGRFARELPEMAVRWKAEEAPDPRLLVLNDELASGLGLDADWLRSPDGVRLLVGNSVPDGATPVAQAYAGHQFG
GFAPRLGDGRALLLGELVDGDGRMRDVHLKGSGHTPFARAGDGLAAVGPMLREYLVSEAMHALGIPTTRSLAVVATGRPV
RRESVLDGAVLTRVASSHLRVGSFQYAAVTGDTDLVRRLAGHAIARHHPEVAGAADPYLGLFEAVCSAQAQLIARWMLVG
FVHGVMNTDNMTISGETIDYGPCAFMDVYDPETVFSSIDSWGRYAYGNQPSIAAWNLARFAETLLPLFDDDIDRAITLAQ
NALGAFGRHYEGALTAGMQAKLGLTGVDGPAVAPLLDELLKLLQDNHIDFTSFFRALGLAARGDNEPVRGLFVDLAGFDA
WLDSWRALGPDGAAMDRVNPVYIPRNHLVEEALTAAAAGDMEPFETLLDAVTGPFDERPGLQRYAEPAPEAFGRYRTFCG
T

Sequences:

>Translated_481_residues
MTNLSLDGRFARELPEMAVRWKAEEAPDPRLLVLNDELASGLGLDADWLRSPDGVRLLVGNSVPDGATPVAQAYAGHQFG
GFAPRLGDGRALLLGELVDGDGRMRDVHLKGSGHTPFARAGDGLAAVGPMLREYLVSEAMHALGIPTTRSLAVVATGRPV
RRESVLDGAVLTRVASSHLRVGSFQYAAVTGDTDLVRRLAGHAIARHHPEVAGAADPYLGLFEAVCSAQAQLIARWMLVG
FVHGVMNTDNMTISGETIDYGPCAFMDVYDPETVFSSIDSWGRYAYGNQPSIAAWNLARFAETLLPLFDDDIDRAITLAQ
NALGAFGRHYEGALTAGMQAKLGLTGVDGPAVAPLLDELLKLLQDNHIDFTSFFRALGLAARGDNEPVRGLFVDLAGFDA
WLDSWRALGPDGAAMDRVNPVYIPRNHLVEEALTAAAAGDMEPFETLLDAVTGPFDERPGLQRYAEPAPEAFGRYRTFCG
T
>Mature_480_residues
TNLSLDGRFARELPEMAVRWKAEEAPDPRLLVLNDELASGLGLDADWLRSPDGVRLLVGNSVPDGATPVAQAYAGHQFGG
FAPRLGDGRALLLGELVDGDGRMRDVHLKGSGHTPFARAGDGLAAVGPMLREYLVSEAMHALGIPTTRSLAVVATGRPVR
RESVLDGAVLTRVASSHLRVGSFQYAAVTGDTDLVRRLAGHAIARHHPEVAGAADPYLGLFEAVCSAQAQLIARWMLVGF
VHGVMNTDNMTISGETIDYGPCAFMDVYDPETVFSSIDSWGRYAYGNQPSIAAWNLARFAETLLPLFDDDIDRAITLAQN
ALGAFGRHYEGALTAGMQAKLGLTGVDGPAVAPLLDELLKLLQDNHIDFTSFFRALGLAARGDNEPVRGLFVDLAGFDAW
LDSWRALGPDGAAMDRVNPVYIPRNHLVEEALTAAAAGDMEPFETLLDAVTGPFDERPGLQRYAEPAPEAFGRYRTFCGT

Specific function: Unknown

COG id: COG0397

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0061 (SELO) family

Homologues:

Organism=Homo sapiens, GI32880229, Length=376, Percent_Identity=38.2978723404255, Blast_Score=231, Evalue=8e-61,
Organism=Escherichia coli, GI1787999, Length=489, Percent_Identity=39.6728016359918, Blast_Score=311, Evalue=6e-86,
Organism=Saccharomyces cerevisiae, GI6325034, Length=305, Percent_Identity=33.1147540983607, Blast_Score=164, Evalue=2e-41,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y5202_MYCSS (Q1B1D0)

Other databases:

- EMBL:   CP000384
- RefSeq:   YP_642360.1
- STRING:   Q1B1D0
- EnsemblBacteria:   EBMYCT00000061425
- GeneID:   4114030
- GenomeReviews:   CP000384_GR
- KEGG:   mmc:Mmcs_5202
- eggNOG:   COG0397
- GeneTree:   EBGT00050000017992
- HOGENOM:   HBG683993
- OMA:   RRDIQLK
- ProtClustDB:   CLSK924862
- BioCyc:   MSP164756:MMCS_5202-MONOMER
- HAMAP:   MF_00692
- InterPro:   IPR003846

Pfam domain/function: PF02696 UPF0061

EC number: NA

Molecular weight: Translated: 51637; Mature: 51506

Theoretical pI: Translated: 4.70; Mature: 4.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTNLSLDGRFARELPEMAVRWKAEEAPDPRLLVLNDELASGLGLDADWLRSPDGVRLLVG
CCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEECCHHHCCCCCCHHHHCCCCCCEEEEC
NSVPDGATPVAQAYAGHQFGGFAPRLGDGRALLLGELVDGDGRMRDVHLKGSGHTPFARA
CCCCCCCCHHHHHHCCCCCCCCCCCCCCCCEEEEEEEECCCCCEEEEEEECCCCCCHHHC
GDGLAAVGPMLREYLVSEAMHALGIPTTRSLAVVATGRPVRRESVLDGAVLTRVASSHLR
CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHCE
VGSFQYAAVTGDTDLVRRLAGHAIARHHPEVAGAADPYLGLFEAVCSAQAQLIARWMLVG
ECCEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
FVHGVMNTDNMTISGETIDYGPCAFMDVYDPETVFSSIDSWGRYAYGNQPSIAAWNLARF
HHHHHCCCCCEEEECCCCCCCCEEEEECCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH
AETLLPLFDDDIDRAITLAQNALGAFGRHYEGALTAGMQAKLGLTGVDGPAVAPLLDELL
HHHHHHHHCCHHHHHHHHHHHHHHHHCCHHCCHHHCCCCCCCCCCCCCCCHHHHHHHHHH
KLLQDNHIDFTSFFRALGLAARGDNEPVRGLFVDLAGFDAWLDSWRALGPDGAAMDRVNP
HHHHCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEHHHHHHHHHHHHHCCCCCCHHCCCCC
VYIPRNHLVEEALTAAAAGDMEPFETLLDAVTGPFDERPGLQRYAEPAPEAFGRYRTFCG
EEECHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCHHHHHCCCHHHHHHHHHHCC
T
C
>Mature Secondary Structure 
TNLSLDGRFARELPEMAVRWKAEEAPDPRLLVLNDELASGLGLDADWLRSPDGVRLLVG
CCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEECCHHHCCCCCCHHHHCCCCCCEEEEC
NSVPDGATPVAQAYAGHQFGGFAPRLGDGRALLLGELVDGDGRMRDVHLKGSGHTPFARA
CCCCCCCCHHHHHHCCCCCCCCCCCCCCCCEEEEEEEECCCCCEEEEEEECCCCCCHHHC
GDGLAAVGPMLREYLVSEAMHALGIPTTRSLAVVATGRPVRRESVLDGAVLTRVASSHLR
CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHCE
VGSFQYAAVTGDTDLVRRLAGHAIARHHPEVAGAADPYLGLFEAVCSAQAQLIARWMLVG
ECCEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
FVHGVMNTDNMTISGETIDYGPCAFMDVYDPETVFSSIDSWGRYAYGNQPSIAAWNLARF
HHHHHCCCCCEEEECCCCCCCCEEEEECCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH
AETLLPLFDDDIDRAITLAQNALGAFGRHYEGALTAGMQAKLGLTGVDGPAVAPLLDELL
HHHHHHHHCCHHHHHHHHHHHHHHHHCCHHCCHHHCCCCCCCCCCCCCCCHHHHHHHHHH
KLLQDNHIDFTSFFRALGLAARGDNEPVRGLFVDLAGFDAWLDSWRALGPDGAAMDRVNP
HHHHCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEHHHHHHHHHHHHHCCCCCCHHCCCCC
VYIPRNHLVEEALTAAAAGDMEPFETLLDAVTGPFDERPGLQRYAEPAPEAFGRYRTFCG
EEECHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCHHHHHCCCHHHHHHHHHHCC
T
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA