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The map label for this gene is ypdB [H]

Identifier: 119870156

GI number: 119870156

Start: 4357780

End: 4358589

Strand: Direct

Name: ypdB [H]

Synonym: Mkms_4126

Alternate gene names: 119870156

Gene position: 4357780-4358589 (Clockwise)

Preceding gene: 119870155

Following gene: 119870157

Centisome position: 75.96

GC content: 70.37

Gene sequence:

>810_bases
GTGAACAGGTCCGGCCTGACCGTGCTCGCCGTCGACGACGAGATGCCCGCACTCGACGAGCTGGCGTACCTGCTGGGCCG
CCATCCCGACATCGGCGAGGTGCTGCGCGTCAACGACGCCACCTCGGCGCTGCGCGAACTGAACCAGCACAGCATCGACG
CGATCTTCCTCGACATCAACATGCCCGGCCTGTCCGGTATCGAATTGGCCGGTGTGCTGGGCAATTTCGCTCAGCGGCCG
GCCATCGTGTTCGTCACCGCCCACGACGACAAGGCCGTCGCCGCCTTCGACGTCGGGGCGATCGACTACCTGCTCAAACC
CATCCGGCAGGATCGCCTCGACGAGGCGGTCCGGCGGGTGGTCGCGGCGCGCAGCGCCGAATCGGCCGGTGCGGCGCGCA
GCGCCGAATCGGCCGCCGACGAGGAACCCGACTCCGACGTCGTACCCGCCGAACTCGGCGGGATCACCCACCTGGTCCCC
CGCGACAGCATCGGCTGGGTGGAGGCCGAGGGCGACTACGCCCGGCTGCACTCGGCGTCGGGCTCACACCTGGTGCGCAT
TCCGCTCAGCACCCTCGAAACCCGTTGGCGGGAGCGGGGTTTCCAACGCATCCACCGCTCCTACCTGGTGGCGCTGCGGC
TGGTGACGGGGCTGCGCACGAGCGACGGCGCGGTGCTGGTGCGGTTGCGCGCCAACGGTTCGTCGCCGGCCGTCGAGTTG
CCGGTGAGCCGCCGTCAGGCCCGTGAGCTGCGTGACCGGTTGGTGCGCGATCCGTTGCGGCATCTGCGACCCGCCGGCGG
CGATGACTGA

Upstream 100 bases:

>100_bases
ACGGTCTGGTGGTCGAGACGGCGATCGGGGCGGGCACGAAGGTCATCATGCGGGTACCCAAGTTCCGGTCCGGCGTGCGG
GCCGGCGGAGGTGCATACGG

Downstream 100 bases:

>100_bases
GCCGGGCCGCCCGCAACGCGAACGGGTGGTGCTGGCCCACCGTCGCGGTGCGCGCATGGTGCGCACCAGGGTCGAGGTGC
AGGAGCAGACCCAGGTGGGT

Product: response regulator receiver protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 269; Mature: 269

Protein sequence:

>269_residues
MNRSGLTVLAVDDEMPALDELAYLLGRHPDIGEVLRVNDATSALRELNQHSIDAIFLDINMPGLSGIELAGVLGNFAQRP
AIVFVTAHDDKAVAAFDVGAIDYLLKPIRQDRLDEAVRRVVAARSAESAGAARSAESAADEEPDSDVVPAELGGITHLVP
RDSIGWVEAEGDYARLHSASGSHLVRIPLSTLETRWRERGFQRIHRSYLVALRLVTGLRTSDGAVLVRLRANGSSPAVEL
PVSRRQARELRDRLVRDPLRHLRPAGGDD

Sequences:

>Translated_269_residues
MNRSGLTVLAVDDEMPALDELAYLLGRHPDIGEVLRVNDATSALRELNQHSIDAIFLDINMPGLSGIELAGVLGNFAQRP
AIVFVTAHDDKAVAAFDVGAIDYLLKPIRQDRLDEAVRRVVAARSAESAGAARSAESAADEEPDSDVVPAELGGITHLVP
RDSIGWVEAEGDYARLHSASGSHLVRIPLSTLETRWRERGFQRIHRSYLVALRLVTGLRTSDGAVLVRLRANGSSPAVEL
PVSRRQARELRDRLVRDPLRHLRPAGGDD
>Mature_269_residues
MNRSGLTVLAVDDEMPALDELAYLLGRHPDIGEVLRVNDATSALRELNQHSIDAIFLDINMPGLSGIELAGVLGNFAQRP
AIVFVTAHDDKAVAAFDVGAIDYLLKPIRQDRLDEAVRRVVAARSAESAGAARSAESAADEEPDSDVVPAELGGITHLVP
RDSIGWVEAEGDYARLHSASGSHLVRIPLSTLETRWRERGFQRIHRSYLVALRLVTGLRTSDGAVLVRLRANGSSPAVEL
PVSRRQARELRDRLVRDPLRHLRPAGGDD

Specific function: Unknown

COG id: COG3279

COG function: function code KT; Response regulator of the LytR/AlgR family

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1788724, Length=247, Percent_Identity=29.5546558704453, Blast_Score=119, Evalue=2e-28,
Organism=Escherichia coli, GI87082052, Length=248, Percent_Identity=31.0483870967742, Blast_Score=102, Evalue=2e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR007492
- InterPro:   IPR001789 [H]

Pfam domain/function: PF04397 LytTR; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 29290; Mature: 29290

Theoretical pI: Translated: 5.87; Mature: 5.87

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50930 HTH_LYTTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRSGLTVLAVDDEMPALDELAYLLGRHPDIGEVLRVNDATSALRELNQHSIDAIFLDIN
CCCCCEEEEEECCCCCHHHHHHHHHCCCCCHHHEEEECHHHHHHHHHHHCCCEEEEEEEC
MPGLSGIELAGVLGNFAQRPAIVFVTAHDDKAVAAFDVGAIDYLLKPIRQDRLDEAVRRV
CCCCCCHHHHHHHHHHHCCCEEEEEEECCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHH
VAARSAESAGAARSAESAADEEPDSDVVPAELGGITHLVPRDSIGWVEAEGDYARLHSAS
HHHHCCHHCCCHHHHHHCCCCCCCCCCCCHHHCCEEEECCCCCCCEEECCCCHHHHCCCC
GSHLVRIPLSTLETRWRERGFQRIHRSYLVALRLVTGLRTSDGAVLVRLRANGSSPAVEL
CCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCEEEC
PVSRRQARELRDRLVRDPLRHLRPAGGDD
CCHHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MNRSGLTVLAVDDEMPALDELAYLLGRHPDIGEVLRVNDATSALRELNQHSIDAIFLDIN
CCCCCEEEEEECCCCCHHHHHHHHHCCCCCHHHEEEECHHHHHHHHHHHCCCEEEEEEEC
MPGLSGIELAGVLGNFAQRPAIVFVTAHDDKAVAAFDVGAIDYLLKPIRQDRLDEAVRRV
CCCCCCHHHHHHHHHHHCCCEEEEEEECCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHH
VAARSAESAGAARSAESAADEEPDSDVVPAELGGITHLVPRDSIGWVEAEGDYARLHSAS
HHHHCCHHCCCHHHHHHCCCCCCCCCCCCHHHCCEEEECCCCCCCEEECCCCHHHHCCCC
GSHLVRIPLSTLETRWRERGFQRIHRSYLVALRLVTGLRTSDGAVLVRLRANGSSPAVEL
CCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCEEEC
PVSRRQARELRDRLVRDPLRHLRPAGGDD
CCHHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]