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The map label for this gene is ygaF [C]

Identifier: 119869639

GI number: 119869639

Start: 3793724

End: 3795145

Strand: Direct

Name: ygaF [C]

Synonym: Mkms_3607

Alternate gene names: 119869639

Gene position: 3793724-3795145 (Clockwise)

Preceding gene: 119869638

Following gene: 119869640

Centisome position: 66.12

GC content: 70.46

Gene sequence:

>1422_bases
GTGAGTACGCCCGACGTCAGCGACGTCAGCGACATCATCGTCGTGGGTGCGGGCATCGTGGGCAGCGCGATCGCGCGCGC
CCTGGCCGGCACCGCGTTGTCGGTGACGCTGCTGGAAGCCCGCGGCGATGTCGGCGACGGCACCAGCAAGGCCAATACGG
CCCTGCTGCACACCGGATTCGACGCGAAGCCGGGCACGTTGGAGTCGACGCTGGTGGCCCGCGGCTACGACCTGCTCGGC
GCCTACGCCGAGCAGACCGGGATCCCCGTCGAGCGCACCGGCGCACTGCTGGTCGCGTGGACCGACGAGGAACGCGACGC
ACTGCCGGGTCTGCAGGACAAGGCGCTGCGCAACGGCTACGCCGAATGCGAGATCGTCGACGCCGCAGAGGTGTACCGCC
GGGTGCCCGACCTGGGGCCCGGCGCGCTGGCCGGCCTCACCGTCCCGGGCGAGTCACTCATCTGCACCTGGACGACCAAC
CTCGCGCTGGCCACCGACGCCGTCCAGCGGGGTGCCCGGTTGCTGCGCAATGCCCGCGTGCTGCACGCCGAACCGGCCGA
CGGGCACACCACGCTGCGCACCACGGCCGGCGACGTCCGCGGCCGCTGGATCGTCAACGCCGCCGGTCTCGGCGCGGACG
CTCTCGACGCCGAGTTCGGCCACCACCGCTTCACCGTCACACCGCGCCGCGGCGAACTCCTGGTCTTCGACAAGCTCGCC
CGGCCGATGGTGCCGCTCATCGTGCTCGCTGTCCCCTCGTCACGCGGTAAGGGCGTCCTCGTCAGCCCGACCATCTACGG
CAACGTGATGGTCGGCCCGACATCGGAGAACCTGACCGACCGCACGGCCACCGATACCAGCGAGGAGGGTTTCGACTTCC
TGCTCAGCAAGGGAAAAGCGTTGATGCCCAAGCTCTTCGACGAAGAGGTCACCGCGAGCTACGCGGGCCTGCGGGCCGCG
ATCGACTCCGACGACTACCTGATCGACGTCGACGCCACGCAGCGCTACGTGCTGGTCGGCGGCATCCGCTCCACCGGGCT
GACGTCGGGGATGGCGATCGCCGAGCACCTCATGGGGCTGCTCGGCGGGACCGACCTCGATCTCGAACCGCGCGCCGACT
TGCCGGACCCACCGCGGATGCCCAATATCGGCGAGGTCGGGGTTCGGCCGTACGAGGACGCCGGCCGCATCGCCGCCGAC
CCCGCCTACGGACGGATCGTGTGCTTCTGCGAACGCGTCACCGCCGGTGAGATCCGCGACGCGTTCGCGTCGACGATCCC
ACCCACCGATCTGGACGGGCTCCGCAGGCGCACCCGGGTGATGAACGGCCGTTGCCAGGGGTTCTACTGCGGAGCCCATA
CGCAGGCGCTTTTGGAGTCCAGCGGCGCCGAGGATGCCGACGATGTGGCGGCGGTGCGATGA

Upstream 100 bases:

>100_bases
ACACCTACGAACCCCGCTGGTCCGCCGACCACGCCGCCGACTACCTCCAGCGGTGGCGCCGGGCCGCGGAATCGACACTG
CAGAACCAAGGAGAGACCTC

Downstream 100 bases:

>100_bases
CGGCGCCGACGCAGAAGGTGGCCGTCGCGATCATCGGCGGCGGACCCGCGGGCCTCACCGCCGCGGCGGCGCTCGCACCC
GACGTCGACGTGCTGGTGCT

Product: FAD dependent oxidoreductase

Products: glycerone phosphate; reduced acceptor

Alternate protein names: NA

Number of amino acids: Translated: 473; Mature: 472

Protein sequence:

>473_residues
MSTPDVSDVSDIIVVGAGIVGSAIARALAGTALSVTLLEARGDVGDGTSKANTALLHTGFDAKPGTLESTLVARGYDLLG
AYAEQTGIPVERTGALLVAWTDEERDALPGLQDKALRNGYAECEIVDAAEVYRRVPDLGPGALAGLTVPGESLICTWTTN
LALATDAVQRGARLLRNARVLHAEPADGHTTLRTTAGDVRGRWIVNAAGLGADALDAEFGHHRFTVTPRRGELLVFDKLA
RPMVPLIVLAVPSSRGKGVLVSPTIYGNVMVGPTSENLTDRTATDTSEEGFDFLLSKGKALMPKLFDEEVTASYAGLRAA
IDSDDYLIDVDATQRYVLVGGIRSTGLTSGMAIAEHLMGLLGGTDLDLEPRADLPDPPRMPNIGEVGVRPYEDAGRIAAD
PAYGRIVCFCERVTAGEIRDAFASTIPPTDLDGLRRRTRVMNGRCQGFYCGAHTQALLESSGAEDADDVAAVR

Sequences:

>Translated_473_residues
MSTPDVSDVSDIIVVGAGIVGSAIARALAGTALSVTLLEARGDVGDGTSKANTALLHTGFDAKPGTLESTLVARGYDLLG
AYAEQTGIPVERTGALLVAWTDEERDALPGLQDKALRNGYAECEIVDAAEVYRRVPDLGPGALAGLTVPGESLICTWTTN
LALATDAVQRGARLLRNARVLHAEPADGHTTLRTTAGDVRGRWIVNAAGLGADALDAEFGHHRFTVTPRRGELLVFDKLA
RPMVPLIVLAVPSSRGKGVLVSPTIYGNVMVGPTSENLTDRTATDTSEEGFDFLLSKGKALMPKLFDEEVTASYAGLRAA
IDSDDYLIDVDATQRYVLVGGIRSTGLTSGMAIAEHLMGLLGGTDLDLEPRADLPDPPRMPNIGEVGVRPYEDAGRIAAD
PAYGRIVCFCERVTAGEIRDAFASTIPPTDLDGLRRRTRVMNGRCQGFYCGAHTQALLESSGAEDADDVAAVR
>Mature_472_residues
STPDVSDVSDIIVVGAGIVGSAIARALAGTALSVTLLEARGDVGDGTSKANTALLHTGFDAKPGTLESTLVARGYDLLGA
YAEQTGIPVERTGALLVAWTDEERDALPGLQDKALRNGYAECEIVDAAEVYRRVPDLGPGALAGLTVPGESLICTWTTNL
ALATDAVQRGARLLRNARVLHAEPADGHTTLRTTAGDVRGRWIVNAAGLGADALDAEFGHHRFTVTPRRGELLVFDKLAR
PMVPLIVLAVPSSRGKGVLVSPTIYGNVMVGPTSENLTDRTATDTSEEGFDFLLSKGKALMPKLFDEEVTASYAGLRAAI
DSDDYLIDVDATQRYVLVGGIRSTGLTSGMAIAEHLMGLLGGTDLDLEPRADLPDPPRMPNIGEVGVRPYEDAGRIAADP
AYGRIVCFCERVTAGEIRDAFASTIPPTDLDGLRRRTRVMNGRCQGFYCGAHTQALLESSGAEDADDVAAVR

Specific function: Unknown

COG id: COG0579

COG function: function code R; Predicted dehydrogenase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI13376331, Length=271, Percent_Identity=26.9372693726937, Blast_Score=89, Evalue=9e-18,
Organism=Escherichia coli, GI87082148, Length=245, Percent_Identity=26.1224489795918, Blast_Score=77, Evalue=3e-15,
Organism=Escherichia coli, GI1788574, Length=507, Percent_Identity=26.6272189349112, Blast_Score=71, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17565764, Length=401, Percent_Identity=24.9376558603491, Blast_Score=97, Evalue=2e-20,
Organism=Drosophila melanogaster, GI24585081, Length=334, Percent_Identity=25.1497005988024, Blast_Score=82, Evalue=8e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006076 [H]

Pfam domain/function: PF01266 DAO [H]

EC number: 1.1.99.5

Molecular weight: Translated: 49895; Mature: 49764

Theoretical pI: Translated: 4.59; Mature: 4.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTPDVSDVSDIIVVGAGIVGSAIARALAGTALSVTLLEARGDVGDGTSKANTALLHTGF
CCCCCCCCCCCEEEECCCHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCEEEEECCC
DAKPGTLESTLVARGYDLLGAYAEQTGIPVERTGALLVAWTDEERDALPGLQDKALRNGY
CCCCCCHHHHHHHCCHHHHHHHHHHCCCCEECCCEEEEEEECCCHHCCCCCHHHHHHCCC
AECEIVDAAEVYRRVPDLGPGALAGLTVPGESLICTWTTNLALATDAVQRGARLLRNARV
CCEEEECHHHHHHHCCCCCCCCEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHCCEE
LHAEPADGHTTLRTTAGDVRGRWIVNAAGLGADALDAEFGHHRFTVTPRRGELLVFDKLA
EEECCCCCCEEEEECCCCCCCEEEEEECCCCCHHHHHCCCCEEEEECCCCCCEEEEHHHC
RPMVPLIVLAVPSSRGKGVLVSPTIYGNVMVGPTSENLTDRTATDTSEEGFDFLLSKGKA
CCCCCEEEEEECCCCCCEEEECCEEECCEEECCCCCCCCCCCCCCCCHHHHHHHHHCCCH
LMPKLFDEEVTASYAGLRAAIDSDDYLIDVDATQRYVLVGGIRSTGLTSGMAIAEHLMGL
HHHHHHHHHHHHHHHHHEEEECCCCEEEEECCCCEEEEEECCHHCCCCHHHHHHHHHHHH
LGGTDLDLEPRADLPDPPRMPNIGEVGVRPYEDAGRIAADPAYGRIVCFCERVTAGEIRD
HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCEEEEEEECCCHHHHHH
AFASTIPPTDLDGLRRRTRVMNGRCQGFYCGAHTQALLESSGAEDADDVAAVR
HHHHCCCCCCHHHHHHHHHHHCCCCCEEEECHHHHHHHHCCCCCCCHHHHCCC
>Mature Secondary Structure 
STPDVSDVSDIIVVGAGIVGSAIARALAGTALSVTLLEARGDVGDGTSKANTALLHTGF
CCCCCCCCCCEEEECCCHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCEEEEECCC
DAKPGTLESTLVARGYDLLGAYAEQTGIPVERTGALLVAWTDEERDALPGLQDKALRNGY
CCCCCCHHHHHHHCCHHHHHHHHHHCCCCEECCCEEEEEEECCCHHCCCCCHHHHHHCCC
AECEIVDAAEVYRRVPDLGPGALAGLTVPGESLICTWTTNLALATDAVQRGARLLRNARV
CCEEEECHHHHHHHCCCCCCCCEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHCCEE
LHAEPADGHTTLRTTAGDVRGRWIVNAAGLGADALDAEFGHHRFTVTPRRGELLVFDKLA
EEECCCCCCEEEEECCCCCCCEEEEEECCCCCHHHHHCCCCEEEEECCCCCCEEEEHHHC
RPMVPLIVLAVPSSRGKGVLVSPTIYGNVMVGPTSENLTDRTATDTSEEGFDFLLSKGKA
CCCCCEEEEEECCCCCCEEEECCEEECCEEECCCCCCCCCCCCCCCCHHHHHHHHHCCCH
LMPKLFDEEVTASYAGLRAAIDSDDYLIDVDATQRYVLVGGIRSTGLTSGMAIAEHLMGL
HHHHHHHHHHHHHHHHHEEEECCCCEEEEECCCCEEEEEECCHHCCCCHHHHHHHHHHHH
LGGTDLDLEPRADLPDPPRMPNIGEVGVRPYEDAGRIAADPAYGRIVCFCERVTAGEIRD
HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCEEEEEEECCCHHHHHH
AFASTIPPTDLDGLRRRTRVMNGRCQGFYCGAHTQALLESSGAEDADDVAAVR
HHHHCCCCCCHHHHHHHHHHHCCCCCEEEECHHHHHHHHCCCCCCCHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: sn-glycerol 3-phosphate; acceptor

Specific reaction: sn-glycerol 3-phosphate + acceptor = glycerone phosphate + reduced acceptor

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7569993 [H]