Click here to switch to the map view.

The map label for this gene is dppC [H]

Identifier: 119869487

GI number: 119869487

Start: 3622919

End: 3623818

Strand: Direct

Name: dppC [H]

Synonym: Mkms_3455

Alternate gene names: 119869487

Gene position: 3622919-3623818 (Clockwise)

Preceding gene: 119869486

Following gene: 119869488

Centisome position: 63.15

GC content: 67.56

Gene sequence:

>900_bases
ATGAGCGCCCCCGCCGACCACACCAGCCCCGAAACGCGAATCGCGTCGTGGCGGTTGCTGCTCGGCAACCCCGTCACGGT
CGTCAGCGCGGTCATCCTCGCGGTGGTCATCGTCGTCGCGCTGTTCGCACAGTGGCTGATCCCCTACGGCGTCAACGACA
TCGACGTGCCGAACGCGTTGCAGGCCCCCAGCGGCGCGCACTGGTTCGGCACCGACGAACTCGGGCGCGACGTGCTCTCA
CGCGTACTGGCCGCGATCCAGGCGTCGATGCGGGTGTCGGTGGTCAGCGTGTCGTTCGCGGTCGTGGTCGGGGTGACCGT
CGGTGTGGTCGCCGGATACCGCGGCGGGTGGCTGGACACCGTGTTGATGCGCATCGTCGACGTGATGTTCGCGTTCCCGG
TGCTTCTGCTCGCGCTCGCGGTGGTGGCGATCCTCGGGCCGGGAGTGACGACGACGATCTTGGCGATCGGCATCGTCTTC
ACGCCGATATTCGCCCGGGTGGCCCGGGCGAGCACCCTGTCGGTGCGGGTGGAACCCTATGTGGCGGTGTCCCGCACGAT
GGGCACCGGGCACCTCTACATCCTGACCCGGCATGTGCTGCCGAACATCTCGGGACCGCTGATCGTGCAGACGTCGCTGT
CGCTGGCGTTCGCGATCCTGTCCGAGGCCGCGCTGTCGTTCCTCGGTCTGGGTATTCAACCGCCCCAGCCGTCGCTGGGT
CGGATGATCTTCGACTCGCAGGGTTTCGTGACGCTGGCGTGGTGGATGGCGGTGTTCCCCGGCGCGGCGATCTTCGTCAT
CGTCCTGGCGTTCAACCTCCTCGGCGACGGGCTGCGCGATGTGCTGGATCCCAAGCAGCGCACCATGATCGAGGCACGCG
CACGCGAGGAGCGAGAATGA

Upstream 100 bases:

>100_bases
TCATCCAGGGCGCGGTGCTGCTGATGGCCGCCCTGTTCTTGCTCATCAACCTGATCGTGGACGCGCTGTACGCGGTCGCC
GACCCGAGGATCCGGCTGTC

Downstream 100 bases:

>100_bases
CACCGGAGAAAGCAATGACCGAACCGGTCCTCGACGTCGCCGACCTGCAGGTGCGGATCGGCAGGCGCGACATCGTGCGC
GGGGTCTCGTTCACCGTCGA

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 299; Mature: 298

Protein sequence:

>299_residues
MSAPADHTSPETRIASWRLLLGNPVTVVSAVILAVVIVVALFAQWLIPYGVNDIDVPNALQAPSGAHWFGTDELGRDVLS
RVLAAIQASMRVSVVSVSFAVVVGVTVGVVAGYRGGWLDTVLMRIVDVMFAFPVLLLALAVVAILGPGVTTTILAIGIVF
TPIFARVARASTLSVRVEPYVAVSRTMGTGHLYILTRHVLPNISGPLIVQTSLSLAFAILSEAALSFLGLGIQPPQPSLG
RMIFDSQGFVTLAWWMAVFPGAAIFVIVLAFNLLGDGLRDVLDPKQRTMIEARAREERE

Sequences:

>Translated_299_residues
MSAPADHTSPETRIASWRLLLGNPVTVVSAVILAVVIVVALFAQWLIPYGVNDIDVPNALQAPSGAHWFGTDELGRDVLS
RVLAAIQASMRVSVVSVSFAVVVGVTVGVVAGYRGGWLDTVLMRIVDVMFAFPVLLLALAVVAILGPGVTTTILAIGIVF
TPIFARVARASTLSVRVEPYVAVSRTMGTGHLYILTRHVLPNISGPLIVQTSLSLAFAILSEAALSFLGLGIQPPQPSLG
RMIFDSQGFVTLAWWMAVFPGAAIFVIVLAFNLLGDGLRDVLDPKQRTMIEARAREERE
>Mature_298_residues
SAPADHTSPETRIASWRLLLGNPVTVVSAVILAVVIVVALFAQWLIPYGVNDIDVPNALQAPSGAHWFGTDELGRDVLSR
VLAAIQASMRVSVVSVSFAVVVGVTVGVVAGYRGGWLDTVLMRIVDVMFAFPVLLLALAVVAILGPGVTTTILAIGIVFT
PIFARVARASTLSVRVEPYVAVSRTMGTGHLYILTRHVLPNISGPLIVQTSLSLAFAILSEAALSFLGLGIQPPQPSLGR
MIFDSQGFVTLAWWMAVFPGAAIFVIVLAFNLLGDGLRDVLDPKQRTMIEARAREERE

Specific function: Part of the binding-protein-dependent transport system for dipeptides; probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787054, Length=272, Percent_Identity=44.1176470588235, Blast_Score=234, Evalue=5e-63,
Organism=Escherichia coli, GI1787760, Length=267, Percent_Identity=43.8202247191011, Blast_Score=228, Evalue=3e-61,
Organism=Escherichia coli, GI1789964, Length=278, Percent_Identity=44.2446043165468, Blast_Score=189, Evalue=1e-49,
Organism=Escherichia coli, GI1789889, Length=243, Percent_Identity=36.6255144032922, Blast_Score=167, Evalue=7e-43,
Organism=Escherichia coli, GI1787549, Length=284, Percent_Identity=34.5070422535211, Blast_Score=147, Evalue=8e-37,
Organism=Escherichia coli, GI1787498, Length=272, Percent_Identity=34.9264705882353, Blast_Score=144, Evalue=7e-36,
Organism=Escherichia coli, GI1788505, Length=226, Percent_Identity=29.646017699115, Blast_Score=94, Evalue=1e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 31905; Mature: 31774

Theoretical pI: Translated: 7.85; Mature: 7.85

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAPADHTSPETRIASWRLLLGNPVTVVSAVILAVVIVVALFAQWLIPYGVNDIDVPNAL
CCCCCCCCCCCHHHHHEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
QAPSGAHWFGTDELGRDVLSRVLAAIQASMRVSVVSVSFAVVVGVTVGVVAGYRGGWLDT
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
VLMRIVDVMFAFPVLLLALAVVAILGPGVTTTILAIGIVFTPIFARVARASTLSVRVEPY
HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCC
VAVSRTMGTGHLYILTRHVLPNISGPLIVQTSLSLAFAILSEAALSFLGLGIQPPQPSLG
EEEECCCCCCEEEEEEHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHH
RMIFDSQGFVTLAWWMAVFPGAAIFVIVLAFNLLGDGLRDVLDPKQRTMIEARAREERE
HHEECCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SAPADHTSPETRIASWRLLLGNPVTVVSAVILAVVIVVALFAQWLIPYGVNDIDVPNAL
CCCCCCCCCCHHHHHEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
QAPSGAHWFGTDELGRDVLSRVLAAIQASMRVSVVSVSFAVVVGVTVGVVAGYRGGWLDT
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
VLMRIVDVMFAFPVLLLALAVVAILGPGVTTTILAIGIVFTPIFARVARASTLSVRVEPY
HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCC
VAVSRTMGTGHLYILTRHVLPNISGPLIVQTSLSLAFAILSEAALSFLGLGIQPPQPSLG
EEEECCCCCCEEEEEEHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHH
RMIFDSQGFVTLAWWMAVFPGAAIFVIVLAFNLLGDGLRDVLDPKQRTMIEARAREERE
HHEECCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9680333 [H]