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The map label for this gene is cydD [H]

Identifier: 119869130

GI number: 119869130

Start: 3239245

End: 3240774

Strand: Direct

Name: cydD [H]

Synonym: Mkms_3098

Alternate gene names: 119869130

Gene position: 3239245-3240774 (Clockwise)

Preceding gene: 119869129

Following gene: 119869131

Centisome position: 56.46

GC content: 73.92

Gene sequence:

>1530_bases
TTGTCGACCACTGATCCCCTGCTACGGCTGACCCTGGACCTGCTGCGGCCCCGGCTGGGGCGGCTGCTGCTCGCGATCGG
TCTGGGTGTGCTCTCGCTGGGCAGCGCACTGGCCCTGGCCGCCGTCGCCGCGTGGCTGATCACCCGCGCCTGGCAGATGC
CGCCGGTGCTCGATCTGAGCGTGGCCGCCGTCGCGGTCCGGGCGCTGGGCATCTCACGCGGCCTCCTCGGCTACTGTCAG
CGACTGGCCGCCCACGACACCGCGTTGCGGGCGGCGGGTAACGCCAGGACGGGGCTGTACCGCACGCTCGCCGAGGCGCC
CCAGGAAGTCGCGATGCGGCTGCCCGGCGGTCAACTGGTCGCCCGCATCGGGGCGTCGGTCGACGATCTCGCCGACGTCC
TCGTGCGGGCAGTGCTGCCGATCGCGGTGGCCGCGGTGCTGTCGGTGGCCGCGGTCGCGGTGCTGGCGGTCATCTCGCCG
GCGTCGGCGGTCCTGCTGGCGGCCTGTCTGATCGTCGCCGGCGTCGTCGCCCCCGCGCTGTCCGCGCGGGCGGTCACCGC
CGCCGAGAGCGCCGCGGTGACCCACCACGCCGATCGCGACGTCGCGGCGATGCTCGCCCTCGACCATGCCGCAGAACTGC
GGGTGAGCGGGCGGTTGGACGGTGTCGTCGCCGAAGCGCAACGCCGCCAACGCGATTGGGGTGACGCATCCGACCGCGCC
GCGGCGCCGGCGGCACTGGCCGCGGCCGTTCCCGGTGCCGCGATGGGCGTCAGCGTCCTGGGCGCCGCCGTCGCGGGCAT
CGCCCTGGCCGGATCGGTGGCACCGACGACCGTGGCGATCCTCATGCTGCTGCCGCTGTCCGCGTTCGAGGCGACCACGG
CGCTGCCCGCCGCGGCGGTGCAACTCACCCGCTCGCGCATCGCCGCCCGTCGACTCCTCGACCTCACCGAACCCGCCGCG
ACCGACCGCCGCCGCCCCGTCGTGGCCCCGGTACCGCTGCGGGCCGGTGACCGGGTGGCCGTCACCGGACCGAGCGGTTC
GGGTAAGACGACGCTGCTGATGGCGATGGCCGAGAACGCCGACGCCACCGACGACTTCACGGGTGCGCGCGGCTTTTTCG
CCGAGGACGCGCACCTGTTCTCCACCACCGTGCGGGACAACCTGCTCGTCGCCCGCGGTGATGCCACCGACGACGAACTG
CGCTCGGCGCTGACGAAGGTCGGTCTGCGCCGGTGGCTCGACGGCCTACCCGACGGCCTGTCGACCGTGCTGGTCGGCGG
GGCGGCCGCGGTGTCGGCCGGTCAGCGCCGACGGTTGCTGCTCGCCCGTGCGCTCATCTCGCCGTTCCCGGTCGTCCTGC
TCGACGAGCCGACCGAACACCTCGACGCCGACGACGCCGCACGGCTGCTCACCGAACTCCTCACTCCCGGTTCACTTTTC
CCGGCCGACCGCACCGTCGTGGTGGCCACCCACCAGCTGCCCGGCGACGACGTTGCCTGTCTACGCCTCAATCTGGCCGC
CAGCAGGTAA

Upstream 100 bases:

>100_bases
GCGGCGCGGGCCCGGGCCGGCGCAACGGTTCTCGTGGTCGGCCACCGCGACAGCGTGCTGTCCGTCGGTGACCAGGTCGT
CAGGATGGGAGCCGAGGTCC

Downstream 100 bases:

>100_bases
CGTCAGCACACATGACCGAGCCGGACAAGCCCGAACAGTCCCCGTCGGCACCGCCGTCAACACCCCCACCCGATTCCACG
CAGCAGCAGCCGTACCCGCA

Product: ABC transporter, transmembrane region, type 1

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 509; Mature: 508

Protein sequence:

>509_residues
MSTTDPLLRLTLDLLRPRLGRLLLAIGLGVLSLGSALALAAVAAWLITRAWQMPPVLDLSVAAVAVRALGISRGLLGYCQ
RLAAHDTALRAAGNARTGLYRTLAEAPQEVAMRLPGGQLVARIGASVDDLADVLVRAVLPIAVAAVLSVAAVAVLAVISP
ASAVLLAACLIVAGVVAPALSARAVTAAESAAVTHHADRDVAAMLALDHAAELRVSGRLDGVVAEAQRRQRDWGDASDRA
AAPAALAAAVPGAAMGVSVLGAAVAGIALAGSVAPTTVAILMLLPLSAFEATTALPAAAVQLTRSRIAARRLLDLTEPAA
TDRRRPVVAPVPLRAGDRVAVTGPSGSGKTTLLMAMAENADATDDFTGARGFFAEDAHLFSTTVRDNLLVARGDATDDEL
RSALTKVGLRRWLDGLPDGLSTVLVGGAAAVSAGQRRRLLLARALISPFPVVLLDEPTEHLDADDAARLLTELLTPGSLF
PADRTVVVATHQLPGDDVACLRLNLAASR

Sequences:

>Translated_509_residues
MSTTDPLLRLTLDLLRPRLGRLLLAIGLGVLSLGSALALAAVAAWLITRAWQMPPVLDLSVAAVAVRALGISRGLLGYCQ
RLAAHDTALRAAGNARTGLYRTLAEAPQEVAMRLPGGQLVARIGASVDDLADVLVRAVLPIAVAAVLSVAAVAVLAVISP
ASAVLLAACLIVAGVVAPALSARAVTAAESAAVTHHADRDVAAMLALDHAAELRVSGRLDGVVAEAQRRQRDWGDASDRA
AAPAALAAAVPGAAMGVSVLGAAVAGIALAGSVAPTTVAILMLLPLSAFEATTALPAAAVQLTRSRIAARRLLDLTEPAA
TDRRRPVVAPVPLRAGDRVAVTGPSGSGKTTLLMAMAENADATDDFTGARGFFAEDAHLFSTTVRDNLLVARGDATDDEL
RSALTKVGLRRWLDGLPDGLSTVLVGGAAAVSAGQRRRLLLARALISPFPVVLLDEPTEHLDADDAARLLTELLTPGSLF
PADRTVVVATHQLPGDDVACLRLNLAASR
>Mature_508_residues
STTDPLLRLTLDLLRPRLGRLLLAIGLGVLSLGSALALAAVAAWLITRAWQMPPVLDLSVAAVAVRALGISRGLLGYCQR
LAAHDTALRAAGNARTGLYRTLAEAPQEVAMRLPGGQLVARIGASVDDLADVLVRAVLPIAVAAVLSVAAVAVLAVISPA
SAVLLAACLIVAGVVAPALSARAVTAAESAAVTHHADRDVAAMLALDHAAELRVSGRLDGVVAEAQRRQRDWGDASDRAA
APAALAAAVPGAAMGVSVLGAAVAGIALAGSVAPTTVAILMLLPLSAFEATTALPAAAVQLTRSRIAARRLLDLTEPAAT
DRRRPVVAPVPLRAGDRVAVTGPSGSGKTTLLMAMAENADATDDFTGARGFFAEDAHLFSTTVRDNLLVARGDATDDELR
SALTKVGLRRWLDGLPDGLSTVLVGGAAAVSAGQRRRLLLARALISPFPVVLLDEPTEHLDADDAARLLTELLTPGSLFP
ADRTVVVATHQLPGDDVACLRLNLAASR

Specific function: Somehow involved in the cytochrome D branch of aerobic respiration. Seems to be a component of a transport system [H]

COG id: COG1132

COG function: function code V; ABC-type multidrug transport system, ATPase and permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI156105685, Length=175, Percent_Identity=33.1428571428571, Blast_Score=79, Evalue=9e-15,
Organism=Homo sapiens, GI4505771, Length=179, Percent_Identity=29.0502793296089, Blast_Score=74, Evalue=3e-13,
Organism=Homo sapiens, GI9961250, Length=179, Percent_Identity=29.0502793296089, Blast_Score=74, Evalue=3e-13,
Organism=Homo sapiens, GI9961252, Length=179, Percent_Identity=29.0502793296089, Blast_Score=74, Evalue=3e-13,
Organism=Homo sapiens, GI255708477, Length=179, Percent_Identity=27.9329608938547, Blast_Score=73, Evalue=7e-13,
Organism=Homo sapiens, GI90421313, Length=142, Percent_Identity=33.8028169014084, Blast_Score=71, Evalue=2e-12,
Organism=Homo sapiens, GI190343023, Length=168, Percent_Identity=32.1428571428571, Blast_Score=70, Evalue=3e-12,
Organism=Homo sapiens, GI110832835, Length=187, Percent_Identity=29.9465240641711, Blast_Score=70, Evalue=6e-12,
Organism=Homo sapiens, GI110832837, Length=187, Percent_Identity=29.9465240641711, Blast_Score=70, Evalue=6e-12,
Organism=Homo sapiens, GI110832839, Length=190, Percent_Identity=29.4736842105263, Blast_Score=70, Evalue=6e-12,
Organism=Homo sapiens, GI4557481, Length=164, Percent_Identity=28.6585365853659, Blast_Score=69, Evalue=9e-12,
Organism=Homo sapiens, GI66529005, Length=170, Percent_Identity=32.3529411764706, Blast_Score=68, Evalue=2e-11,
Organism=Homo sapiens, GI21729876, Length=163, Percent_Identity=31.9018404907975, Blast_Score=67, Evalue=5e-11,
Organism=Homo sapiens, GI21729873, Length=163, Percent_Identity=31.9018404907975, Blast_Score=67, Evalue=5e-11,
Organism=Homo sapiens, GI15149474, Length=163, Percent_Identity=31.9018404907975, Blast_Score=67, Evalue=5e-11,
Organism=Homo sapiens, GI42741659, Length=153, Percent_Identity=29.4117647058824, Blast_Score=66, Evalue=6e-11,
Organism=Escherichia coli, GI1787112, Length=526, Percent_Identity=29.8479087452471, Blast_Score=135, Evalue=9e-33,
Organism=Escherichia coli, GI1787113, Length=196, Percent_Identity=34.1836734693878, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI1787143, Length=189, Percent_Identity=28.042328042328, Blast_Score=64, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI193209708, Length=148, Percent_Identity=33.1081081081081, Blast_Score=81, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI212646699, Length=257, Percent_Identity=26.4591439688716, Blast_Score=80, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI17558664, Length=181, Percent_Identity=28.7292817679558, Blast_Score=79, Evalue=7e-15,
Organism=Caenorhabditis elegans, GI115533592, Length=176, Percent_Identity=31.25, Blast_Score=77, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17569143, Length=194, Percent_Identity=29.3814432989691, Blast_Score=75, Evalue=9e-14,
Organism=Caenorhabditis elegans, GI115535101, Length=429, Percent_Identity=22.3776223776224, Blast_Score=70, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI193202349, Length=179, Percent_Identity=29.0502793296089, Blast_Score=70, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI17569145, Length=176, Percent_Identity=27.2727272727273, Blast_Score=70, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI17543740, Length=178, Percent_Identity=27.5280898876405, Blast_Score=69, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI25146777, Length=179, Percent_Identity=28.4916201117318, Blast_Score=69, Evalue=7e-12,
Organism=Caenorhabditis elegans, GI71996809, Length=177, Percent_Identity=26.5536723163842, Blast_Score=66, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI193211017, Length=177, Percent_Identity=26.5536723163842, Blast_Score=66, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI193211015, Length=177, Percent_Identity=26.5536723163842, Blast_Score=66, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI17565938, Length=175, Percent_Identity=29.1428571428571, Blast_Score=66, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI71992285, Length=188, Percent_Identity=28.1914893617021, Blast_Score=66, Evalue=5e-11,
Organism=Saccharomyces cerevisiae, GI6323217, Length=153, Percent_Identity=31.3725490196078, Blast_Score=71, Evalue=3e-13,
Organism=Saccharomyces cerevisiae, GI6323959, Length=191, Percent_Identity=29.3193717277487, Blast_Score=70, Evalue=8e-13,
Organism=Saccharomyces cerevisiae, GI6321720, Length=164, Percent_Identity=31.0975609756098, Blast_Score=63, Evalue=1e-10,
Organism=Drosophila melanogaster, GI85726357, Length=178, Percent_Identity=29.2134831460674, Blast_Score=72, Evalue=7e-13,
Organism=Drosophila melanogaster, GI28574259, Length=167, Percent_Identity=33.5329341317365, Blast_Score=72, Evalue=7e-13,
Organism=Drosophila melanogaster, GI221474134, Length=190, Percent_Identity=29.4736842105263, Blast_Score=72, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24585091, Length=168, Percent_Identity=34.5238095238095, Blast_Score=72, Evalue=1e-12,
Organism=Drosophila melanogaster, GI281361582, Length=174, Percent_Identity=32.183908045977, Blast_Score=71, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24649703, Length=166, Percent_Identity=30.7228915662651, Blast_Score=70, Evalue=4e-12,
Organism=Drosophila melanogaster, GI45550390, Length=195, Percent_Identity=31.7948717948718, Blast_Score=70, Evalue=4e-12,
Organism=Drosophila melanogaster, GI62484234, Length=165, Percent_Identity=33.3333333333333, Blast_Score=67, Evalue=3e-11,
Organism=Drosophila melanogaster, GI24641565, Length=178, Percent_Identity=29.7752808988764, Blast_Score=67, Evalue=4e-11,
Organism=Drosophila melanogaster, GI17136662, Length=180, Percent_Identity=27.7777777777778, Blast_Score=67, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014223
- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR017940
- InterPro:   IPR001140
- InterPro:   IPR011527
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00664 ABC_membrane; PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 52144; Mature: 52013

Theoretical pI: Translated: 7.64; Mature: 7.64

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2 ; PS50929 ABC_TM1F

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTTDPLLRLTLDLLRPRLGRLLLAIGLGVLSLGSALALAAVAAWLITRAWQMPPVLDLS
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
VAAVAVRALGISRGLLGYCQRLAAHDTALRAAGNARTGLYRTLAEAPQEVAMRLPGGQLV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCHHHHHHHCCCHHHH
ARIGASVDDLADVLVRAVLPIAVAAVLSVAAVAVLAVISPASAVLLAACLIVAGVVAPAL
HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
SARAVTAAESAAVTHHADRDVAAMLALDHAAELRVSGRLDGVVAEAQRRQRDWGDASDRA
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHEECCCHHHHHHHHHHHHCCCCCCCCCC
AAPAALAAAVPGAAMGVSVLGAAVAGIALAGSVAPTTVAILMLLPLSAFEATTALPAAAV
CCHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
QLTRSRIAARRLLDLTEPAATDRRRPVVAPVPLRAGDRVAVTGPSGSGKTTLLMAMAENA
HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCEEEEEEEECCC
DATDDFTGARGFFAEDAHLFSTTVRDNLLVARGDATDDELRSALTKVGLRRWLDGLPDGL
CCCCCCCCCCCCCCCCHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCHH
STVLVGGAAAVSAGQRRRLLLARALISPFPVVLLDEPTEHLDADDAARLLTELLTPGSLF
HHHHHCCHHHHCCCHHHHHHHHHHHHCCCCEEEECCCHHHCCCHHHHHHHHHHCCCCCCC
PADRTVVVATHQLPGDDVACLRLNLAASR
CCCCEEEEEECCCCCCCEEEEEEECCCCC
>Mature Secondary Structure 
STTDPLLRLTLDLLRPRLGRLLLAIGLGVLSLGSALALAAVAAWLITRAWQMPPVLDLS
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
VAAVAVRALGISRGLLGYCQRLAAHDTALRAAGNARTGLYRTLAEAPQEVAMRLPGGQLV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCHHHHHHHCCCHHHH
ARIGASVDDLADVLVRAVLPIAVAAVLSVAAVAVLAVISPASAVLLAACLIVAGVVAPAL
HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
SARAVTAAESAAVTHHADRDVAAMLALDHAAELRVSGRLDGVVAEAQRRQRDWGDASDRA
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHEECCCHHHHHHHHHHHHCCCCCCCCCC
AAPAALAAAVPGAAMGVSVLGAAVAGIALAGSVAPTTVAILMLLPLSAFEATTALPAAAV
CCHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
QLTRSRIAARRLLDLTEPAATDRRRPVVAPVPLRAGDRVAVTGPSGSGKTTLLMAMAENA
HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCEEEEEEEECCC
DATDDFTGARGFFAEDAHLFSTTVRDNLLVARGDATDDELRSALTKVGLRRWLDGLPDGL
CCCCCCCCCCCCCCCCHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCHH
STVLVGGAAAVSAGQRRRLLLARALISPFPVVLLDEPTEHLDADDAARLLTELLTPGSLF
HHHHHCCHHHHCCCHHHHHHHHHHHHCCCCEEEECCCHHHCCCHHHHHHHHHHCCCCCCC
PADRTVVVATHQLPGDDVACLRLNLAASR
CCCCEEEEEECCCCCCCEEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8969509; 9384377 [H]