Click here to switch to the map view.

The map label for this gene is ydeS [H]

Identifier: 119869024

GI number: 119869024

Start: 3124821

End: 3125396

Strand: Direct

Name: ydeS [H]

Synonym: Mkms_2992

Alternate gene names: 119869024

Gene position: 3124821-3125396 (Clockwise)

Preceding gene: 119869016

Following gene: 119869033

Centisome position: 54.47

GC content: 70.49

Gene sequence:

>576_bases
GTGCACGTGACCGAGCGGCCGCCGGATCCCCGTATCGACCACTCGCGACGAATCATCTGTCGCGCCGCACTCGAGGAGTT
CGCCGCATCCGGCTACGCCGGCTTCCGAATGGACGCGGTGGCGACCCGCGCCGGCGTCGGTCGGAGCACGGTCTACCGAC
ACTGGAAGAACAAGGGCGCGTTGATCGTCGATGCGCTGCGCACACTGAACACGCAGCCCGACCCCGCCCGGGACCTCCCC
ACCGTCAGCGCCCGGCAGCAGGTCGAACTCCTACTCGGTCACCTGGCGACGGCGTTGTCCGACTCCGCGGTGTCGTCGGT
GATCCCTGCGCTGATCCACGCCGCCGACCACGACCCCGACCTGCGCGAGCATCTGCACGCGTACTCGGCCCAGCGCCGCC
GGCGCCTGACCGACACGATCGCGAGCGCCGTATCCGCAGGCGAGGTGCGGGCGGTGGATCCGGAGGTCGCCTCGGTGCTG
CTCTCGGGCGCCGTCTTCTACCGCAAGCTGATGACCGCCGATGCGCCGGATCCAGGGGACATCACCGCCCTCGTCGACAC
CGTCCTCGCGCCCTGA

Upstream 100 bases:

>100_bases
CGATGTAGCGGACACGTATGGTGCTCATCGTCGCACCTCCTCGAAATTGTGAAACACTTATGTATTGTTACGCTACACCA
ATGTCCCAAAAAGGGAAGGG

Downstream 100 bases:

>100_bases
CGGTCAGTCGGTTTCGGCTGCCTCCGCCCGTGCGGCGTCGAGCAGCTCCCGGGCGTGGGCCCTGCCGCTGTCGGACTCAC
CGAGGCCGGCCAGCATGCGG

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 191; Mature: 191

Protein sequence:

>191_residues
MHVTERPPDPRIDHSRRIICRAALEEFAASGYAGFRMDAVATRAGVGRSTVYRHWKNKGALIVDALRTLNTQPDPARDLP
TVSARQQVELLLGHLATALSDSAVSSVIPALIHAADHDPDLREHLHAYSAQRRRRLTDTIASAVSAGEVRAVDPEVASVL
LSGAVFYRKLMTADAPDPGDITALVDTVLAP

Sequences:

>Translated_191_residues
MHVTERPPDPRIDHSRRIICRAALEEFAASGYAGFRMDAVATRAGVGRSTVYRHWKNKGALIVDALRTLNTQPDPARDLP
TVSARQQVELLLGHLATALSDSAVSSVIPALIHAADHDPDLREHLHAYSAQRRRRLTDTIASAVSAGEVRAVDPEVASVL
LSGAVFYRKLMTADAPDPGDITALVDTVLAP
>Mature_191_residues
MHVTERPPDPRIDHSRRIICRAALEEFAASGYAGFRMDAVATRAGVGRSTVYRHWKNKGALIVDALRTLNTQPDPARDLP
TVSARQQVELLLGHLATALSDSAVSSVIPALIHAADHDPDLREHLHAYSAQRRRRLTDTIASAVSAGEVRAVDPEVASVL
LSGAVFYRKLMTADAPDPGDITALVDTVLAP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 20628; Mature: 20628

Theoretical pI: Translated: 7.30; Mature: 7.30

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHVTERPPDPRIDHSRRIICRAALEEFAASGYAGFRMDAVATRAGVGRSTVYRHWKNKGA
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHCCCC
LIVDALRTLNTQPDPARDLPTVSARQQVELLLGHLATALSDSAVSSVIPALIHAADHDPD
HHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
LREHLHAYSAQRRRRLTDTIASAVSAGEVRAVDPEVASVLLSGAVFYRKLMTADAPDPGD
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCHHHHHHHHHHHHHHHHHHHCCCCCCCH
ITALVDTVLAP
HHHHHHHHHCC
>Mature Secondary Structure
MHVTERPPDPRIDHSRRIICRAALEEFAASGYAGFRMDAVATRAGVGRSTVYRHWKNKGA
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHCCCC
LIVDALRTLNTQPDPARDLPTVSARQQVELLLGHLATALSDSAVSSVIPALIHAADHDPD
HHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
LREHLHAYSAQRRRRLTDTIASAVSAGEVRAVDPEVASVLLSGAVFYRKLMTADAPDPGD
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCHHHHHHHHHHHHHHHHHHHCCCCCCCH
ITALVDTVLAP
HHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]