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The map label for this gene is ycdK [C]

Identifier: 119868265

GI number: 119868265

Start: 2342465

End: 2342833

Strand: Reverse

Name: ycdK [C]

Synonym: Mkms_2229

Alternate gene names: 119868265

Gene position: 2342833-2342465 (Counterclockwise)

Preceding gene: 119868266

Following gene: 119868263

Centisome position: 40.84

GC content: 68.02

Gene sequence:

>369_bases
ATGCCCGGCGACCGGACCGATTTCGGATCCGGTTCCGAGTACGAGGCGCTGGTGGGCTATTCACGCGCGGTGCGGATCGG
GAACCAGGTGCTGGTGGCAGGTACCACCGGCGCGGGCGACGACATCGTCACGCAGACACGAGACGCGTTGCGCCGCATCG
AATCCGCACTGATCCAAGCCGGCGCGTCACTGTCGGACGTGGTGCGCACCCGCATCTATGTCACCGACATCGCCCGCTGG
CGCGACGTGGGTGCCGTGCACGCGGAGGTTTTCGGCGCGGTCCGGCCCGCGTCGACGATGGTCGAGGTGTCGGCGTTGAT
CTCCCCCGACCTGTACGTCGAGGTCGAGGCCGACGCTCACGTCGGTTGA

Upstream 100 bases:

>100_bases
GCGGTGAGTACGCGAACCTGTTGTCACGCACCGGTTTTCGACTCACGCACGTCACCGGCACCGTGACTCCGCTGTCGATC
CTGGAAGCCGAGCCCGTCTG

Downstream 100 bases:

>100_bases
TCGAACGGTGCGAACCTGCCGTCGGGTCCCGGCCGGTAGGGGGTGACATCTCTCACGGCCTCGGCGGGCAGCGGGCCGTA
CAGGTGCGGGAACACCATCG

Product: endoribonuclease L-PSP

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 122; Mature: 121

Protein sequence:

>122_residues
MPGDRTDFGSGSEYEALVGYSRAVRIGNQVLVAGTTGAGDDIVTQTRDALRRIESALIQAGASLSDVVRTRIYVTDIARW
RDVGAVHAEVFGAVRPASTMVEVSALISPDLYVEVEADAHVG

Sequences:

>Translated_122_residues
MPGDRTDFGSGSEYEALVGYSRAVRIGNQVLVAGTTGAGDDIVTQTRDALRRIESALIQAGASLSDVVRTRIYVTDIARW
RDVGAVHAEVFGAVRPASTMVEVSALISPDLYVEVEADAHVG
>Mature_121_residues
PGDRTDFGSGSEYEALVGYSRAVRIGNQVLVAGTTGAGDDIVTQTRDALRRIESALIQAGASLSDVVRTRIYVTDIARWR
DVGAVHAEVFGAVRPASTMVEVSALISPDLYVEVEADAHVG

Specific function: Unknown

COG id: COG0251

COG function: function code J; Putative translation initiation inhibitor, yjgF family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR006056
- InterPro:   IPR019897 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 12935; Mature: 12803

Theoretical pI: Translated: 4.51; Mature: 4.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPGDRTDFGSGSEYEALVGYSRAVRIGNQVLVAGTTGAGDDIVTQTRDALRRIESALIQA
CCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHC
GASLSDVVRTRIYVTDIARWRDVGAVHAEVFGAVRPASTMVEVSALISPDLYVEVEADAH
CCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHCCCCEEEEEECCCC
VG
CC
>Mature Secondary Structure 
PGDRTDFGSGSEYEALVGYSRAVRIGNQVLVAGTTGAGDDIVTQTRDALRRIESALIQA
CCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHC
GASLSDVVRTRIYVTDIARWRDVGAVHAEVFGAVRPASTMVEVSALISPDLYVEVEADAH
CCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHCCCCEEEEEECCCC
VG
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12622808 [H]