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The map label for this gene is hypD2 [H]

Identifier: 119868216

GI number: 119868216

Start: 2297138

End: 2298238

Strand: Reverse

Name: hypD2 [H]

Synonym: Mkms_2180

Alternate gene names: 119868216

Gene position: 2298238-2297138 (Counterclockwise)

Preceding gene: 119868217

Following gene: 119868215

Centisome position: 40.06

GC content: 64.58

Gene sequence:

>1101_bases
ATGAAGTATCTCGACGAATTCAGCGATCCGCAGTTGGCGCGCAAGCTCATCGAGCAGATCAAATCCGTCACGACTCGGCG
CTGGTCGATCATGGAAGTCTGTGGCGGGCAGACGCATTCGATCATCCGGCACGGCATCGACCAGCTGCTCCCCGATCAGA
TCGAGATGATCCACGGCCCCGGTTGCCCGGTGTGCGTCACTCCGCTGGAGATCATCGACAAGGCACTCGAGATCGCGTCG
CGTCCCGAGGTGATCTTCTGTTCCTTCGGCGACATGCTGCGGGTGCCCGGCAGCGAGAGCGACCTCTTCCAGATCAAGAG
CCGTGGCGGTGATGTGCGGGTGGTGTACTCACCGCTCGACGCACTGACCGTGGCGAAGGACAATCCGGACCGGCAGGTGG
TGTTCTTCGGTATCGGCTTCGAGACCACCGCCCCGGCCAACGCGATGACCGTCTACCAGGCCAAGCGGCAGGGCATCCCC
AATTTCTCGTTGCTGGTGTCCCATGTCCTGGTGCCGCCGGCGATCTCGGCGATCATGGAGTCCCCGACGTGCCGCGTGCA
GGCGTTCCTGGCGGCCGGTCACGTGTGCTCGGTGATGGGCACTGCCGAGTACCCGCCGCTGTGCGAGAAGTACGGGATCC
CGATCGTGGTCACCGGTTTCGAGCCACTGGACATCCTCGAGGGCATCCGCCGAACGGTCGTGCAACTCGAGGCGGGCCGA
CACGAACTGGAAAACGCCTATCCGCGCGCGGTACGCGCCGAGGGCAATCCGGCGGCCAAGACGATGCTGGCGGATGTCTT
CGAGGTCACCGACCGCAGTTGGCGCGGTATCGGGATGATCCCGCAGAGCGGTTGGCGGCTGTCACCGGCGTACCGGGACT
TCGACGCGGAGTACCGCTTCGCCGTGACCGGCATCCACACCGACGAGTCGACGCTGTGCCGATCGGGAGAAGTGTTGCAG
GGCTTGATCAAACCGCACGAATGCGCGGCTTTCGGCACGGTGTGCACACCCCGCAATCCGTTGGGCGCCACGATGGTCTC
CTCCGAGGGCGCCTGCGCGGCCTATTACCTCTACCGTCGCCTCGAGGTCAGCCATGCGTGA

Upstream 100 bases:

>100_bases
TCGAGCACCTCGGGGTGCTCGAGGAGGAGTTCGGTGACGGTTTCGAACTCGCCGCACGTCAGGCCGGGCTGGCCAACCCG
AATGGTGAGAGGGCACAGGG

Downstream 100 bases:

>100_bases
GACCCGCGCAGCGATCGACATGGAGAGCTGGGTGTGCCCGGCGCCGCTGCGGGATTCGCCGAACGTCGTGATGGGTCACG
GCGGTGGCGGCGCGATGTCG

Product: hydrogenase expression/formation protein HypD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 366; Mature: 366

Protein sequence:

>366_residues
MKYLDEFSDPQLARKLIEQIKSVTTRRWSIMEVCGGQTHSIIRHGIDQLLPDQIEMIHGPGCPVCVTPLEIIDKALEIAS
RPEVIFCSFGDMLRVPGSESDLFQIKSRGGDVRVVYSPLDALTVAKDNPDRQVVFFGIGFETTAPANAMTVYQAKRQGIP
NFSLLVSHVLVPPAISAIMESPTCRVQAFLAAGHVCSVMGTAEYPPLCEKYGIPIVVTGFEPLDILEGIRRTVVQLEAGR
HELENAYPRAVRAEGNPAAKTMLADVFEVTDRSWRGIGMIPQSGWRLSPAYRDFDAEYRFAVTGIHTDESTLCRSGEVLQ
GLIKPHECAAFGTVCTPRNPLGATMVSSEGACAAYYLYRRLEVSHA

Sequences:

>Translated_366_residues
MKYLDEFSDPQLARKLIEQIKSVTTRRWSIMEVCGGQTHSIIRHGIDQLLPDQIEMIHGPGCPVCVTPLEIIDKALEIAS
RPEVIFCSFGDMLRVPGSESDLFQIKSRGGDVRVVYSPLDALTVAKDNPDRQVVFFGIGFETTAPANAMTVYQAKRQGIP
NFSLLVSHVLVPPAISAIMESPTCRVQAFLAAGHVCSVMGTAEYPPLCEKYGIPIVVTGFEPLDILEGIRRTVVQLEAGR
HELENAYPRAVRAEGNPAAKTMLADVFEVTDRSWRGIGMIPQSGWRLSPAYRDFDAEYRFAVTGIHTDESTLCRSGEVLQ
GLIKPHECAAFGTVCTPRNPLGATMVSSEGACAAYYLYRRLEVSHA
>Mature_366_residues
MKYLDEFSDPQLARKLIEQIKSVTTRRWSIMEVCGGQTHSIIRHGIDQLLPDQIEMIHGPGCPVCVTPLEIIDKALEIAS
RPEVIFCSFGDMLRVPGSESDLFQIKSRGGDVRVVYSPLDALTVAKDNPDRQVVFFGIGFETTAPANAMTVYQAKRQGIP
NFSLLVSHVLVPPAISAIMESPTCRVQAFLAAGHVCSVMGTAEYPPLCEKYGIPIVVTGFEPLDILEGIRRTVVQLEAGR
HELENAYPRAVRAEGNPAAKTMLADVFEVTDRSWRGIGMIPQSGWRLSPAYRDFDAEYRFAVTGIHTDESTLCRSGEVLQ
GLIKPHECAAFGTVCTPRNPLGATMVSSEGACAAYYLYRRLEVSHA

Specific function: Required For The Formation Of All Three Hydrogenase Isoenzymes. [C]

COG id: COG0409

COG function: function code O; Hydrogenase maturation factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hypD family [H]

Homologues:

Organism=Escherichia coli, GI1789084, Length=370, Percent_Identity=49.1891891891892, Blast_Score=367, Evalue=1e-103,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002780 [H]

Pfam domain/function: PF01924 HypD [H]

EC number: NA

Molecular weight: Translated: 40230; Mature: 40230

Theoretical pI: Translated: 6.05; Mature: 6.05

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
3.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKYLDEFSDPQLARKLIEQIKSVTTRRWSIMEVCGGQTHSIIRHGIDQLLPDQIEMIHGP
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHEECCC
GCPVCVTPLEIIDKALEIASRPEVIFCSFGDMLRVPGSESDLFQIKSRGGDVRVVYSPLD
CCCEEECCHHHHHHHHHHCCCCCEEEEECCCEEECCCCCCCHHHHCCCCCCEEEEECCCC
ALTVAKDNPDRQVVFFGIGFETTAPANAMTVYQAKRQGIPNFSLLVSHVLVPPAISAIME
EEEEECCCCCCEEEEEEECCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHC
SPTCRVQAFLAAGHVCSVMGTAEYPPLCEKYGIPIVVTGFEPLDILEGIRRTVVQLEAGR
CCCHHHHHHHHHCHHHHHCCCCCCCCHHHHCCCCEEEECCCHHHHHHHHHHHHHHHHCCH
HELENAYPRAVRAEGNPAAKTMLADVFEVTDRSWRGIGMIPQSGWRLSPAYRDFDAEYRF
HHHHHCCCCEEECCCCHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCCCHHHCCCCCEEE
AVTGIHTDESTLCRSGEVLQGLIKPHECAAFGTVCTPRNPLGATMVSSEGACAAYYLYRR
EEEEECCCHHHHHHCCHHHHHHCCCHHHHHHCCCCCCCCCCCCEEECCCCCHHHHHHHHH
LEVSHA
HHHCCC
>Mature Secondary Structure
MKYLDEFSDPQLARKLIEQIKSVTTRRWSIMEVCGGQTHSIIRHGIDQLLPDQIEMIHGP
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHEECCC
GCPVCVTPLEIIDKALEIASRPEVIFCSFGDMLRVPGSESDLFQIKSRGGDVRVVYSPLD
CCCEEECCHHHHHHHHHHCCCCCEEEEECCCEEECCCCCCCHHHHCCCCCCEEEEECCCC
ALTVAKDNPDRQVVFFGIGFETTAPANAMTVYQAKRQGIPNFSLLVSHVLVPPAISAIME
EEEEECCCCCCEEEEEEECCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHC
SPTCRVQAFLAAGHVCSVMGTAEYPPLCEKYGIPIVVTGFEPLDILEGIRRTVVQLEAGR
CCCHHHHHHHHHCHHHHHCCCCCCCCHHHHCCCCEEEECCCHHHHHHHHHHHHHHHHCCH
HELENAYPRAVRAEGNPAAKTMLADVFEVTDRSWRGIGMIPQSGWRLSPAYRDFDAEYRF
HHHHHCCCCEEECCCCHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCCCHHHCCCCCEEE
AVTGIHTDESTLCRSGEVLQGLIKPHECAAFGTVCTPRNPLGATMVSSEGACAAYYLYRR
EEEEECCCHHHHHHCCHHHHHHCCCHHHHHHCCCCCCCCCCCCEEECCCCCHHHHHHHHH
LEVSHA
HHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12597275; 8510650 [H]