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The map label for this gene is yciR [C]

Identifier: 119867834

GI number: 119867834

Start: 1902628

End: 1904433

Strand: Reverse

Name: yciR [C]

Synonym: Mkms_1795

Alternate gene names: 119867834

Gene position: 1904433-1902628 (Counterclockwise)

Preceding gene: 119867835

Following gene: 119867832

Centisome position: 33.19

GC content: 67.72

Gene sequence:

>1806_bases
GTGCCGAGAAACCTCGAGGTCCTCGTGACCGCGGTCGCCATCGACCTGATGGCGGTCACGGCGGCGACCTCAGCGCAGGT
GAGTGAACGCGTGCTGGGCGACCTCGTCTCGTATCTCGACGTCGATGCGAGTTTCTTGCGGCACCACGACCACCGCGTGC
ACGCTTCCGAACTGGTCGCCGAATGGCCGCCGCGCACCTCCCCCGGGGGGCCCGATCCGCTCAAGGTCGTCTACTTCTCC
GACGCCGACCCGGTGTTCGCGCAGACCGAGCATCTCGGCGAACCGGCGATCCTGCGGCCGGCGCCCGCGGATGCGACAGG
TCCCCGCGGGGCGGCCACGGTCGCCGAGATCCCCTTGCGATCCGGTGACGTCACGACCGGCGTGCTGGGCTTCGTCAAGT
TCGGCGACCGCGTCTGGGAGCAGGACGAACTGAACGCGCTCACCGCCATCGCATCGCTGTTCGCCCAGGTGCAGGCCAGG
ATCGCCGCCGAGGAACGGCTGCGCTACCTCGCCGACCACGACGACCTGACCGGTCTGCACAACCGTCGTGCGCTGCTCCG
ACACCTCGACGACCGGCTCGCGGCGGGCCGCCCCGGTCCGGTGGCGGTGCTCTTCTTCGATCTCGACCGGCTCAAGGCGG
TCAACGACTATCTCGGCCACATCGCCGGCGACTGGTTCATCCGGGTCCTCGCCGAGCGCCTGCAGCAGGGTGACGAGAAG
AAGTTCATCGCCCGCCTCGGCGGTGACGAGTTCGTCGTCGTTCCGGCTGCGCCGACGACCGCCGATGACGCGGAGACGCT
CGCGCACAGACTGCAGGCCGTTCTGCGCGAGCGGGTTTCGATCGACGGCGAGTTGTTGACCCGCACGATCAGCATCGGTG
TCGCCGTCGGCACGCCCGGCCGCGACACGACCTCGGATCTGCTGAGCCGGGCAGACCAGGCGGTGTTGAGCGCCAAAGGG
GAAGGCGGCAACAGCATCTCGGTCTTCAGTGAACAGATGTCGCAGGAGATCACCCTGCGCAACGACATCGAGTTGCATCT
CCAGAGCGTCATCGACAGCGGGGCCCTGGTTCTGCACTACCTGCCCGAGGTGGACATCCGAACCGGTGAGATCCTCGCCA
CCGAGGCTCTCGTCCGCTGGCAGCATCCCACCCGCGGGCTGCTCTCCCCCGACCGGTTCATCGGGGTGGCGGAGTCCATC
AACCTCGCGGGCGAACTGGGCCGGTGGGTGCTACGCAACGCCTGCGCTGAGTTCGCCCGCTGGCGCGCAGCCGGGGTGGG
AGACCGGATCGTGTTGCGCGTCAACGTGTCCCCGGTGCAGCTCGTCACGGAGGGTTTCGTCGAGTCCGTGGCGGACGTGA
TGGCCGATTTCGGGCTGGAACGCGGGTCGGTGTGTCTGGAGATCACCGAGAGCGTCGTCGTCCAGGACATCGACACCACA
CGGGTCACCCTGGCAGGGCTCAAGGAGGCCGGGGTCAAGGTGGCGATCGACGACTTCGGGACGGGCTACAGCGTGTTGTC
GCTGCTGAAATCGCTTCCCGTGGACACCCTGAAGATCGACAAGAGCTTCGTTCGGGATCTCGGCGTCAACGCCGGTGACC
TCGCGATCGTCCGGGCCATCATCGCGCTCGCGGCGGCGTTCGGGCTCGAGCTGGTGGCCGAGGGAGTCGAAACCGAGATC
GCCGCACAGACCCTGCTGGACCACGGGTGCCACCGCGCCCAGGGTTTCCTGCTGTCCCGTCCGGTGCCCGGCGAACAGAT
GGAACGGTTACTGGCCGAAGGGCGGATTCCCGTTCATTTCTCGTGA

Upstream 100 bases:

>100_bases
TCCTACGCTTCTCCATCGCGCCCCGCCCGTCGATGCGCAGCAGACGCCGACGCTTGAGCACCCCGGCACCGGCATGACAC
CACCGGGAACGGAGACGACC

Downstream 100 bases:

>100_bases
CCGGCGGGGTTCGGCACGGTTGCGCCGCGACTCCCGCATCGCCTTCGGAAGCCGGCGATTGCTACTCGAGCAGGTCGCGG
CGGGCGGGGCCGCGGGCGGG

Product: diguanylate cyclase/phosphodiesterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 601; Mature: 600

Protein sequence:

>601_residues
MPRNLEVLVTAVAIDLMAVTAATSAQVSERVLGDLVSYLDVDASFLRHHDHRVHASELVAEWPPRTSPGGPDPLKVVYFS
DADPVFAQTEHLGEPAILRPAPADATGPRGAATVAEIPLRSGDVTTGVLGFVKFGDRVWEQDELNALTAIASLFAQVQAR
IAAEERLRYLADHDDLTGLHNRRALLRHLDDRLAAGRPGPVAVLFFDLDRLKAVNDYLGHIAGDWFIRVLAERLQQGDEK
KFIARLGGDEFVVVPAAPTTADDAETLAHRLQAVLRERVSIDGELLTRTISIGVAVGTPGRDTTSDLLSRADQAVLSAKG
EGGNSISVFSEQMSQEITLRNDIELHLQSVIDSGALVLHYLPEVDIRTGEILATEALVRWQHPTRGLLSPDRFIGVAESI
NLAGELGRWVLRNACAEFARWRAAGVGDRIVLRVNVSPVQLVTEGFVESVADVMADFGLERGSVCLEITESVVVQDIDTT
RVTLAGLKEAGVKVAIDDFGTGYSVLSLLKSLPVDTLKIDKSFVRDLGVNAGDLAIVRAIIALAAAFGLELVAEGVETEI
AAQTLLDHGCHRAQGFLLSRPVPGEQMERLLAEGRIPVHFS

Sequences:

>Translated_601_residues
MPRNLEVLVTAVAIDLMAVTAATSAQVSERVLGDLVSYLDVDASFLRHHDHRVHASELVAEWPPRTSPGGPDPLKVVYFS
DADPVFAQTEHLGEPAILRPAPADATGPRGAATVAEIPLRSGDVTTGVLGFVKFGDRVWEQDELNALTAIASLFAQVQAR
IAAEERLRYLADHDDLTGLHNRRALLRHLDDRLAAGRPGPVAVLFFDLDRLKAVNDYLGHIAGDWFIRVLAERLQQGDEK
KFIARLGGDEFVVVPAAPTTADDAETLAHRLQAVLRERVSIDGELLTRTISIGVAVGTPGRDTTSDLLSRADQAVLSAKG
EGGNSISVFSEQMSQEITLRNDIELHLQSVIDSGALVLHYLPEVDIRTGEILATEALVRWQHPTRGLLSPDRFIGVAESI
NLAGELGRWVLRNACAEFARWRAAGVGDRIVLRVNVSPVQLVTEGFVESVADVMADFGLERGSVCLEITESVVVQDIDTT
RVTLAGLKEAGVKVAIDDFGTGYSVLSLLKSLPVDTLKIDKSFVRDLGVNAGDLAIVRAIIALAAAFGLELVAEGVETEI
AAQTLLDHGCHRAQGFLLSRPVPGEQMERLLAEGRIPVHFS
>Mature_600_residues
PRNLEVLVTAVAIDLMAVTAATSAQVSERVLGDLVSYLDVDASFLRHHDHRVHASELVAEWPPRTSPGGPDPLKVVYFSD
ADPVFAQTEHLGEPAILRPAPADATGPRGAATVAEIPLRSGDVTTGVLGFVKFGDRVWEQDELNALTAIASLFAQVQARI
AAEERLRYLADHDDLTGLHNRRALLRHLDDRLAAGRPGPVAVLFFDLDRLKAVNDYLGHIAGDWFIRVLAERLQQGDEKK
FIARLGGDEFVVVPAAPTTADDAETLAHRLQAVLRERVSIDGELLTRTISIGVAVGTPGRDTTSDLLSRADQAVLSAKGE
GGNSISVFSEQMSQEITLRNDIELHLQSVIDSGALVLHYLPEVDIRTGEILATEALVRWQHPTRGLLSPDRFIGVAESIN
LAGELGRWVLRNACAEFARWRAAGVGDRIVLRVNVSPVQLVTEGFVESVADVMADFGLERGSVCLEITESVVVQDIDTTR
VTLAGLKEAGVKVAIDDFGTGYSVLSLLKSLPVDTLKIDKSFVRDLGVNAGDLAIVRAIIALAAAFGLELVAEGVETEIA
AQTLLDHGCHRAQGFLLSRPVPGEQMERLLAEGRIPVHFS

Specific function: Unknown

COG id: COG2200

COG function: function code T; FOG: EAL domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 GGDEF domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=429, Percent_Identity=35.8974358974359, Blast_Score=259, Evalue=3e-70,
Organism=Escherichia coli, GI87081921, Length=427, Percent_Identity=32.7868852459016, Blast_Score=213, Evalue=3e-56,
Organism=Escherichia coli, GI226510982, Length=459, Percent_Identity=30.9368191721133, Blast_Score=189, Evalue=3e-49,
Organism=Escherichia coli, GI1787055, Length=271, Percent_Identity=36.5313653136531, Blast_Score=169, Evalue=5e-43,
Organism=Escherichia coli, GI87081743, Length=243, Percent_Identity=34.9794238683128, Blast_Score=137, Evalue=3e-33,
Organism=Escherichia coli, GI1786507, Length=282, Percent_Identity=31.5602836879433, Blast_Score=136, Evalue=4e-33,
Organism=Escherichia coli, GI1790496, Length=250, Percent_Identity=33.6, Blast_Score=134, Evalue=1e-32,
Organism=Escherichia coli, GI1788502, Length=255, Percent_Identity=32.156862745098, Blast_Score=130, Evalue=2e-31,
Organism=Escherichia coli, GI1788849, Length=209, Percent_Identity=34.4497607655502, Blast_Score=127, Evalue=3e-30,
Organism=Escherichia coli, GI87081980, Length=237, Percent_Identity=35.8649789029536, Blast_Score=126, Evalue=3e-30,
Organism=Escherichia coli, GI87082096, Length=256, Percent_Identity=32.03125, Blast_Score=112, Evalue=6e-26,
Organism=Escherichia coli, GI87081845, Length=236, Percent_Identity=31.7796610169492, Blast_Score=109, Evalue=5e-25,
Organism=Escherichia coli, GI87081977, Length=224, Percent_Identity=32.1428571428571, Blast_Score=78, Evalue=2e-15,
Organism=Escherichia coli, GI87081881, Length=174, Percent_Identity=35.632183908046, Blast_Score=76, Evalue=5e-15,
Organism=Escherichia coli, GI1788381, Length=409, Percent_Identity=24.4498777506112, Blast_Score=70, Evalue=5e-13,
Organism=Escherichia coli, GI145693134, Length=176, Percent_Identity=33.5227272727273, Blast_Score=70, Evalue=6e-13,
Organism=Escherichia coli, GI1787410, Length=222, Percent_Identity=27.9279279279279, Blast_Score=69, Evalue=9e-13,
Organism=Escherichia coli, GI1786584, Length=188, Percent_Identity=32.4468085106383, Blast_Score=69, Evalue=1e-12,
Organism=Escherichia coli, GI1787802, Length=190, Percent_Identity=31.0526315789474, Blast_Score=69, Evalue=1e-12,
Organism=Escherichia coli, GI1787816, Length=163, Percent_Identity=28.8343558282209, Blast_Score=68, Evalue=1e-12,
Organism=Escherichia coli, GI1789650, Length=464, Percent_Identity=23.0603448275862, Blast_Score=67, Evalue=3e-12,
Organism=Escherichia coli, GI87081974, Length=107, Percent_Identity=39.2523364485981, Blast_Score=66, Evalue=7e-12,
Organism=Escherichia coli, GI87082007, Length=172, Percent_Identity=32.5581395348837, Blast_Score=66, Evalue=7e-12,
Organism=Escherichia coli, GI1787262, Length=164, Percent_Identity=30.4878048780488, Blast_Score=65, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF [H]

EC number: NA

Molecular weight: Translated: 64887; Mature: 64755

Theoretical pI: Translated: 4.78; Mature: 4.78

Prosite motif: PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPRNLEVLVTAVAIDLMAVTAATSAQVSERVLGDLVSYLDVDASFLRHHDHRVHASELVA
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHH
EWPPRTSPGGPDPLKVVYFSDADPVFAQTEHLGEPAILRPAPADATGPRGAATVAEIPLR
HCCCCCCCCCCCCEEEEEECCCCCCHHHHHHCCCCCEECCCCCCCCCCCCCCHHHHCCCC
SGDVTTGVLGFVKFGDRVWEQDELNALTAIASLFAQVQARIAAEERLRYLADHDDLTGLH
CCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH
NRRALLRHLDDRLAAGRPGPVAVLFFDLDRLKAVNDYLGHIAGDWFIRVLAERLQQGDEK
HHHHHHHHHHHHHHCCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
KFIARLGGDEFVVVPAAPTTADDAETLAHRLQAVLRERVSIDGELLTRTISIGVAVGTPG
HHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHEEEEEECCCC
RDTTSDLLSRADQAVLSAKGEGGNSISVFSEQMSQEITLRNDIELHLQSVIDSGALVLHY
CCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCEEEEE
LPEVDIRTGEILATEALVRWQHPTRGLLSPDRFIGVAESINLAGELGRWVLRNACAEFAR
CCCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WRAAGVGDRIVLRVNVSPVQLVTEGFVESVADVMADFGLERGSVCLEITESVVVQDIDTT
HHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCH
RVTLAGLKEAGVKVAIDDFGTGYSVLSLLKSLPVDTLKIDKSFVRDLGVNAGDLAIVRAI
HHEEHHHHHCCCEEEEECCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCHHHHHHHH
IALAAAFGLELVAEGVETEIAAQTLLDHGCHRAQGFLLSRPVPGEQMERLLAEGRIPVHF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCEEECCCCCHHHHHHHHHCCCCCEEC
S
C
>Mature Secondary Structure 
PRNLEVLVTAVAIDLMAVTAATSAQVSERVLGDLVSYLDVDASFLRHHDHRVHASELVA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHH
EWPPRTSPGGPDPLKVVYFSDADPVFAQTEHLGEPAILRPAPADATGPRGAATVAEIPLR
HCCCCCCCCCCCCEEEEEECCCCCCHHHHHHCCCCCEECCCCCCCCCCCCCCHHHHCCCC
SGDVTTGVLGFVKFGDRVWEQDELNALTAIASLFAQVQARIAAEERLRYLADHDDLTGLH
CCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH
NRRALLRHLDDRLAAGRPGPVAVLFFDLDRLKAVNDYLGHIAGDWFIRVLAERLQQGDEK
HHHHHHHHHHHHHHCCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
KFIARLGGDEFVVVPAAPTTADDAETLAHRLQAVLRERVSIDGELLTRTISIGVAVGTPG
HHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHEEEEEECCCC
RDTTSDLLSRADQAVLSAKGEGGNSISVFSEQMSQEITLRNDIELHLQSVIDSGALVLHY
CCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCEEEEE
LPEVDIRTGEILATEALVRWQHPTRGLLSPDRFIGVAESINLAGELGRWVLRNACAEFAR
CCCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WRAAGVGDRIVLRVNVSPVQLVTEGFVESVADVMADFGLERGSVCLEITESVVVQDIDTT
HHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCH
RVTLAGLKEAGVKVAIDDFGTGYSVLSLLKSLPVDTLKIDKSFVRDLGVNAGDLAIVRAI
HHEEHHHHHCCCEEEEECCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCHHHHHHHH
IALAAAFGLELVAEGVETEIAAQTLLDHGCHRAQGFLLSRPVPGEQMERLLAEGRIPVHF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCEEECCCCCHHHHHHHHHCCCCCEEC
S
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]