Click here to switch to the map view.

The map label for this gene is ycdC [C]

Identifier: 119867465

GI number: 119867465

Start: 1514770

End: 1515444

Strand: Reverse

Name: ycdC [C]

Synonym: Mkms_1415

Alternate gene names: 119867465

Gene position: 1515444-1514770 (Counterclockwise)

Preceding gene: 119867469

Following gene: 119867463

Centisome position: 26.41

GC content: 65.93

Gene sequence:

>675_bases
ATGAGCGATCTCGCCAACACCGCTGAGAGGAGTGGCGACAAGCCTGCCAGCAGCACCGGGCTGCCGAAGAACAACCGGCG
CGGCAATCGACTCCCACGCGACGAGCGTCGCGGGCAGTTACTGATCGCCGCCAGTGAGGTTTTCGTCGACCGGGGCTACC
ACGCCGCCGGCATGGACGAGATCGCCGACCGCGCCGGTGTCAGCAAACCGGTTCTGTACCAACACTTCTCATCGAAGCTC
GAACTGTATCTCGCGGTGCTGCAACGCCACGTCGACAACATGGTCTCCGGCGTGCGTCAGGCGCTGCGCACCACCACCGA
CAACCGGCAACGGTTGCGCGCGGCCGTCCAGGCGTTCTTCGACTTCATCGAACACGACAGCCAGGGCTACCGGCTGATCT
TCGAGAACGACTACACCACCGAACCGCAGGTGGCCGCACAGGTGAAGGTCGCGACCGAGGCCTGCACCGATGCGGTGTTC
GACCTGATCAGCCGGGACTCCGGCCTGGAGGCCCACCGGGCCAGGATGATCGCGGTGGGCCTCGTGGCCATCAGCGTGGA
CTGCGCCCGCTACTGGCTCGATGCCGATCGGCCGATCTCAAAGGACGATGCGGTCGACGGCACGGTGCACTTCGCCTGGG
GCGGGCTGTCCCACGTGCCGCTCACCCGTTCTTGA

Upstream 100 bases:

>100_bases
TCGCGACGCGTGTGACACCCCACCGGTAGTAGTGTCGGAGCGATGAGCGCCTTGGCCCAGCACCGCCGAGCGCGCCAGCC
GAATCCAGATTGAGGACTTG

Downstream 100 bases:

>100_bases
TGGCCTCCGCGCCGACCACACCGAAGCCCACGCGCCGCACGTCGGCGGCACCGATCTCCACATAGGCGATCCGGCTCGTC
TGCACCAGGTAGCGGCGCCC

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator TetR Family; TetR-Family Transcriptional Regulator; Transcriptional Regulator; Regulatory Protein TetR; Transcriptional Regulatory Protein; TetR-Type Transcriptional Regulator; TetR/AcrR Family Transcriptional Regulator; TetR-Family Regulatory Protein; Tetr Family Transcriptional Regulator; Transcriptional Regulator TetR-Family; Transcriptional Regulator TetR Family Protein; TetR-Family Protein Regulatory Protein; Transcription Regulator; TetR Family Regulatory Protein; Transcriptional Regulator Tetr Family; TetR-Family Transcriptional Regulator Protein; LOW QUALITY PROTEIN TetR-Family Regulatory Protein; Regulatory Protein

Number of amino acids: Translated: 224; Mature: 223

Protein sequence:

>224_residues
MSDLANTAERSGDKPASSTGLPKNNRRGNRLPRDERRGQLLIAASEVFVDRGYHAAGMDEIADRAGVSKPVLYQHFSSKL
ELYLAVLQRHVDNMVSGVRQALRTTTDNRQRLRAAVQAFFDFIEHDSQGYRLIFENDYTTEPQVAAQVKVATEACTDAVF
DLISRDSGLEAHRARMIAVGLVAISVDCARYWLDADRPISKDDAVDGTVHFAWGGLSHVPLTRS

Sequences:

>Translated_224_residues
MSDLANTAERSGDKPASSTGLPKNNRRGNRLPRDERRGQLLIAASEVFVDRGYHAAGMDEIADRAGVSKPVLYQHFSSKL
ELYLAVLQRHVDNMVSGVRQALRTTTDNRQRLRAAVQAFFDFIEHDSQGYRLIFENDYTTEPQVAAQVKVATEACTDAVF
DLISRDSGLEAHRARMIAVGLVAISVDCARYWLDADRPISKDDAVDGTVHFAWGGLSHVPLTRS
>Mature_223_residues
SDLANTAERSGDKPASSTGLPKNNRRGNRLPRDERRGQLLIAASEVFVDRGYHAAGMDEIADRAGVSKPVLYQHFSSKLE
LYLAVLQRHVDNMVSGVRQALRTTTDNRQRLRAAVQAFFDFIEHDSQGYRLIFENDYTTEPQVAAQVKVATEACTDAVFD
LISRDSGLEAHRARMIAVGLVAISVDCARYWLDADRPISKDDAVDGTVHFAWGGLSHVPLTRS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 24830; Mature: 24699

Theoretical pI: Translated: 6.89; Mature: 6.89

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDLANTAERSGDKPASSTGLPKNNRRGNRLPRDERRGQLLIAASEVFVDRGYHAAGMDE
CCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHCCEEEEEEHHHHHHCCCCCCCHHH
IADRAGVSKPVLYQHFSSKLELYLAVLQRHVDNMVSGVRQALRTTTDNRQRLRAAVQAFF
HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
DFIEHDSQGYRLIFENDYTTEPQVAAQVKVATEACTDAVFDLISRDSGLEAHRARMIAVG
HHHHCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
LVAISVDCARYWLDADRPISKDDAVDGTVHFAWGGLSHVPLTRS
HHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCCCCCC
>Mature Secondary Structure 
SDLANTAERSGDKPASSTGLPKNNRRGNRLPRDERRGQLLIAASEVFVDRGYHAAGMDE
CCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHCCEEEEEEHHHHHHCCCCCCCHHH
IADRAGVSKPVLYQHFSSKLELYLAVLQRHVDNMVSGVRQALRTTTDNRQRLRAAVQAFF
HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
DFIEHDSQGYRLIFENDYTTEPQVAAQVKVATEACTDAVFDLISRDSGLEAHRARMIAVG
HHHHCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
LVAISVDCARYWLDADRPISKDDAVDGTVHFAWGGLSHVPLTRS
HHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA