Click here to switch to the map view.

The map label for this gene is lytR [H]

Identifier: 119867385

GI number: 119867385

Start: 1429397

End: 1430869

Strand: Reverse

Name: lytR [H]

Synonym: Mkms_1335

Alternate gene names: 119867385

Gene position: 1430869-1429397 (Counterclockwise)

Preceding gene: 119867389

Following gene: 119867384

Centisome position: 24.94

GC content: 68.77

Gene sequence:

>1473_bases
ATGCCCGCTCGAGTCCTTCGCGCCGTCGCTGTGACGGTCACCCTTGCCGTGGTGCTCGGGACCGGTGTGGCCTGGAGCCG
GATCCGGTCCTTCGAGGAGGGCATCAACCACATCAGCTCCGCGTCTCTCGGCGAAGGCGGCGAGGACGGCGCGATCGACG
TCCTGCTGGTGGGGTCCGACAGCCGTACCGACGCGCACGGCAACCCGCTGTCGGAGGAAGAGCTGGCCGTGCTGCGCGCC
GGCAACGACGTGTCCACCAACACCGACACCATCATCTTGATCCGTATCCCCAACAACGGGCAGTCGGCGACGGCCATCTC
GATCCCGCGCGATTCCTACGTCCAGGCCCCCGGGCTGGGCAAGATGAAGATCAACGGTGTGTACGGGTCGGTGCACCTCG
AGAAGCTCAAAGAACTCGTCGAGGAGCAGGGGATGGACCCCGCCGAGGCGGAGCCGCTGGCGGTCGAAGACGGCCGCGAG
GCGTTGATCAAGACGGTCGCGAACCTCACCGGGGTGACCGTCGACCACTACGCCGAGATCGGGCTGCTGGGCTTCGCGCT
GATCACCGACGCCCTCGGCGGTGTCGATGTCTGCCTCAAAGAACCTGTCTACGAACCGCTTTCGGGTGCGGACTTCCCGG
CCGGCTGGCAGAAGCTGAACGGGCCGCAGGCGTTGAGCTTCGTGCGTCAGCGCCACGATCTGCCGCGCGGCGACCTCGAC
CGGGTGACCCGCCAGCAGGCGGTGATGGCGTCGCTCGCCCACGAGGTGATCTCCAGCAAGACGCTGTCGAGCCCGGCGAC
GCTGAGCCGGCTGGAGGCGGCCGTGCAGCGGTCGGTGGTGCTCTCCGACGGCTGGGACATCATGGATTTCGTCGACCAGC
TGCAGAAGCTGGCCGCCGGCAACGTCGCCTTCGCCACCATCCCGGTGGTGCGTGAGGACGGCTGGAGCGACGACGGTATG
CAGAGTGTGGTGCGTGTCGACCCGGCGGCGGTCCAGGAGTGGGTCACGGGTCTGCTCAACGAACAGGACGAGGGCAAGAC
CGAGGAGCTGGCCTACACACCGGACAAGACGACCGTCGAGGTCGTCAACGCCACCGACATCAACGGTCTGGCCGCTTCGG
TGTCGACAGTGCTGTCGCAGAAGGGATTCACCCCCGGCGCGACCGGTAACTTCGAGGGCGGTGCCGTCACCGGCAGCCAG
GTGCGGGCGGCCAAGGCCGACGATCTCGGCGCCCAAGCGGTGGCGAGGGATCTGGGCGGACTCACCGTCGTGGAGGACGG
TTCCGTGGCGCCGGGCACCGTGCGGGTGGTGCTCGCCGACGACTACACCGGCCCCGGCTCCGGACTCGACGGCACGGACC
CGACGCTGCTGGCCGCCGACCCGGTCGCCACCGGGGCCACCGATCCGGCCGCACCACCGCCGCCCCCGCAGATCATCACC
GCCGGTTCCGATGACCCGGAGTGTGTGAACTGA

Upstream 100 bases:

>100_bases
GATCACGAGACGTTGCGGCATACGTGTGAGTTTGACACGCGCCCTGGCGCGCCGACGATCGCTACCCCGTCTGCGCTGCC
CTCGCCAGTAGCCTGGGCTG

Downstream 100 bases:

>100_bases
CTGTCACCGCGGCACTGCTGGGCCCGCTGCTGGATTCCGACCCCGCCGGGCCGAGCATCACCTACTACGACGACGCGACC
GGCGAACGCATCGAAGTGTC

Product: cell envelope-related transcriptional attenuator

Products: NA

Alternate protein names: Membrane-bound protein lytR [H]

Number of amino acids: Translated: 490; Mature: 489

Protein sequence:

>490_residues
MPARVLRAVAVTVTLAVVLGTGVAWSRIRSFEEGINHISSASLGEGGEDGAIDVLLVGSDSRTDAHGNPLSEEELAVLRA
GNDVSTNTDTIILIRIPNNGQSATAISIPRDSYVQAPGLGKMKINGVYGSVHLEKLKELVEEQGMDPAEAEPLAVEDGRE
ALIKTVANLTGVTVDHYAEIGLLGFALITDALGGVDVCLKEPVYEPLSGADFPAGWQKLNGPQALSFVRQRHDLPRGDLD
RVTRQQAVMASLAHEVISSKTLSSPATLSRLEAAVQRSVVLSDGWDIMDFVDQLQKLAAGNVAFATIPVVREDGWSDDGM
QSVVRVDPAAVQEWVTGLLNEQDEGKTEELAYTPDKTTVEVVNATDINGLAASVSTVLSQKGFTPGATGNFEGGAVTGSQ
VRAAKADDLGAQAVARDLGGLTVVEDGSVAPGTVRVVLADDYTGPGSGLDGTDPTLLAADPVATGATDPAAPPPPPQIIT
AGSDDPECVN

Sequences:

>Translated_490_residues
MPARVLRAVAVTVTLAVVLGTGVAWSRIRSFEEGINHISSASLGEGGEDGAIDVLLVGSDSRTDAHGNPLSEEELAVLRA
GNDVSTNTDTIILIRIPNNGQSATAISIPRDSYVQAPGLGKMKINGVYGSVHLEKLKELVEEQGMDPAEAEPLAVEDGRE
ALIKTVANLTGVTVDHYAEIGLLGFALITDALGGVDVCLKEPVYEPLSGADFPAGWQKLNGPQALSFVRQRHDLPRGDLD
RVTRQQAVMASLAHEVISSKTLSSPATLSRLEAAVQRSVVLSDGWDIMDFVDQLQKLAAGNVAFATIPVVREDGWSDDGM
QSVVRVDPAAVQEWVTGLLNEQDEGKTEELAYTPDKTTVEVVNATDINGLAASVSTVLSQKGFTPGATGNFEGGAVTGSQ
VRAAKADDLGAQAVARDLGGLTVVEDGSVAPGTVRVVLADDYTGPGSGLDGTDPTLLAADPVATGATDPAAPPPPPQIIT
AGSDDPECVN
>Mature_489_residues
PARVLRAVAVTVTLAVVLGTGVAWSRIRSFEEGINHISSASLGEGGEDGAIDVLLVGSDSRTDAHGNPLSEEELAVLRAG
NDVSTNTDTIILIRIPNNGQSATAISIPRDSYVQAPGLGKMKINGVYGSVHLEKLKELVEEQGMDPAEAEPLAVEDGREA
LIKTVANLTGVTVDHYAEIGLLGFALITDALGGVDVCLKEPVYEPLSGADFPAGWQKLNGPQALSFVRQRHDLPRGDLDR
VTRQQAVMASLAHEVISSKTLSSPATLSRLEAAVQRSVVLSDGWDIMDFVDQLQKLAAGNVAFATIPVVREDGWSDDGMQ
SVVRVDPAAVQEWVTGLLNEQDEGKTEELAYTPDKTTVEVVNATDINGLAASVSTVLSQKGFTPGATGNFEGGAVTGSQV
RAAKADDLGAQAVARDLGGLTVVEDGSVAPGTVRVVLADDYTGPGSGLDGTDPTLLAADPVATGATDPAAPPPPPQIITA
GSDDPECVN

Specific function: Attenuator role for operon expression [H]

COG id: COG1316

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the LytR/CpsA/Psr regulatory protein family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004474 [H]

Pfam domain/function: PF03816 LytR_cpsA_psr [H]

EC number: NA

Molecular weight: Translated: 50917; Mature: 50786

Theoretical pI: Translated: 4.13; Mature: 4.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPARVLRAVAVTVTLAVVLGTGVAWSRIRSFEEGINHISSASLGEGGEDGAIDVLLVGSD
CCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCC
SRTDAHGNPLSEEELAVLRAGNDVSTNTDTIILIRIPNNGQSATAISIPRDSYVQAPGLG
CCCCCCCCCCCHHHEEEEECCCCCCCCCCEEEEEEECCCCCCCEEEECCCCCCCCCCCCC
KMKINGVYGSVHLEKLKELVEEQGMDPAEAEPLAVEDGREALIKTVANLTGVTVDHYAEI
CEEEECEECHHHHHHHHHHHHHCCCCCCCCCCEECCCHHHHHHHHHHHHCCCCHHHHHHH
GLLGFALITDALGGVDVCLKEPVYEPLSGADFPAGWQKLNGPQALSFVRQRHDLPRGDLD
HHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCHHHCCCHHHHHHHHHHCCCCCCHHH
RVTRQQAVMASLAHEVISSKTLSSPATLSRLEAAVQRSVVLSDGWDIMDFVDQLQKLAAG
HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHCC
NVAFATIPVVREDGWSDDGMQSVVRVDPAAVQEWVTGLLNEQDEGKTEELAYTPDKTTVE
CEEEEEEEEEECCCCCCHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEECCCCCEEE
VVNATDINGLAASVSTVLSQKGFTPGATGNFEGGAVTGSQVRAAKADDLGAQAVARDLGG
EEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHCCCHHHHHHHHHHHHCC
LTVVEDGSVAPGTVRVVLADDYTGPGSGLDGTDPTLLAADPVATGATDPAAPPPPPQIIT
EEEEECCCCCCCEEEEEEEECCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCEEE
AGSDDPECVN
CCCCCCCCCC
>Mature Secondary Structure 
PARVLRAVAVTVTLAVVLGTGVAWSRIRSFEEGINHISSASLGEGGEDGAIDVLLVGSD
CHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCC
SRTDAHGNPLSEEELAVLRAGNDVSTNTDTIILIRIPNNGQSATAISIPRDSYVQAPGLG
CCCCCCCCCCCHHHEEEEECCCCCCCCCCEEEEEEECCCCCCCEEEECCCCCCCCCCCCC
KMKINGVYGSVHLEKLKELVEEQGMDPAEAEPLAVEDGREALIKTVANLTGVTVDHYAEI
CEEEECEECHHHHHHHHHHHHHCCCCCCCCCCEECCCHHHHHHHHHHHHCCCCHHHHHHH
GLLGFALITDALGGVDVCLKEPVYEPLSGADFPAGWQKLNGPQALSFVRQRHDLPRGDLD
HHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCHHHCCCHHHHHHHHHHCCCCCCHHH
RVTRQQAVMASLAHEVISSKTLSSPATLSRLEAAVQRSVVLSDGWDIMDFVDQLQKLAAG
HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHCC
NVAFATIPVVREDGWSDDGMQSVVRVDPAAVQEWVTGLLNEQDEGKTEELAYTPDKTTVE
CEEEEEEEEEECCCCCCHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCEEECCCCCEEE
VVNATDINGLAASVSTVLSQKGFTPGATGNFEGGAVTGSQVRAAKADDLGAQAVARDLGG
EEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHCCCHHHHHHHHHHHHCC
LTVVEDGSVAPGTVRVVLADDYTGPGSGLDGTDPTLLAADPVATGATDPAAPPPPPQIIT
EEEEECCCCCCCEEEEEEEECCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCEEE
AGSDDPECVN
CCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12721630 [H]