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The map label for this gene is rnpA

Identifier: 119866064

GI number: 119866064

Start: 4860

End: 5216

Strand: Reverse

Name: rnpA

Synonym: Mkms_0007

Alternate gene names: 119866064

Gene position: 5216-4860 (Counterclockwise)

Preceding gene: 119866065

Following gene: 119866063

Centisome position: 0.09

GC content: 68.07

Gene sequence:

>357_bases
GTGCTTCCGGCTCGGTACCGGATGACCCGGTCGACGGAGTTCAGTACCACAGTCAGTAAAGGGGTGCGCTCGGCGCAACC
CGATCTCGTGCTGCATATGGCGAACGTCCTCGACGATCCGAGCGGTCCACGTGTCGGGTTGGTGGTGGCCAAATCGGTCG
GTAACGCCGTCGTACGCCACCGGGTCTCCCGTCGACTGCGGCACAGTGTCCATCCGATGCTCGACGAACTGCAACCCGGT
CACCGGTTGGTGATCCGTGCGCTGCCGGGTGCCGCGTCGGCGACGTCGGCCCGACTCCACCAGGAACTGTCCGCGGCGCT
GCGCCGAGCCCGGCCGCGCGTCGAGGCGTCGGCGTGA

Upstream 100 bases:

>100_bases
GCTGCGGATGCGTACCCGTGCCGGCCGGGCGATCGTGACGGGCCGTCGTCGTAAGGGCCGCCGTTCTCTGACTGCGTGAG
TCGACGCAGGATCTCACGCG

Downstream 100 bases:

>100_bases
ATGCACCACGACGGGTGAGCATCTCGGCCGCGAAGGCCGTCATCTACGTCATCCAGCTCTACCGCCACATGATCTCTCCG
CTCCGTTACCCGTCGTGCCG

Product: ribonuclease P

Products: NA

Alternate protein names: RNase P protein; RNaseP protein; Protein C5

Number of amino acids: Translated: 118; Mature: 118

Protein sequence:

>118_residues
MLPARYRMTRSTEFSTTVSKGVRSAQPDLVLHMANVLDDPSGPRVGLVVAKSVGNAVVRHRVSRRLRHSVHPMLDELQPG
HRLVIRALPGAASATSARLHQELSAALRRARPRVEASA

Sequences:

>Translated_118_residues
MLPARYRMTRSTEFSTTVSKGVRSAQPDLVLHMANVLDDPSGPRVGLVVAKSVGNAVVRHRVSRRLRHSVHPMLDELQPG
HRLVIRALPGAASATSARLHQELSAALRRARPRVEASA
>Mature_118_residues
MLPARYRMTRSTEFSTTVSKGVRSAQPDLVLHMANVLDDPSGPRVGLVVAKSVGNAVVRHRVSRRLRHSVHPMLDELQPG
HRLVIRALPGAASATSARLHQELSAALRRARPRVEASA

Specific function: RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-lead

COG id: COG0594

COG function: function code J; RNase P protein component

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rnpA family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RNPA_MYCSJ (A3Q8S4)

Other databases:

- EMBL:   CP000580
- RefSeq:   YP_001074042.1
- ProteinModelPortal:   A3Q8S4
- SMR:   A3Q8S4
- STRING:   A3Q8S4
- EnsemblBacteria:   EBMYCT00000048887
- GeneID:   4881485
- GenomeReviews:   CP000580_GR
- KEGG:   mjl:Mjls_5788
- eggNOG:   COG0594
- GeneTree:   EBGT00050000016354
- HOGENOM:   HBG728160
- OMA:   LWDSAES
- ProtClustDB:   PRK00588
- BioCyc:   MSP164757:MJLS_5788-MONOMER
- HAMAP:   MF_00227
- InterPro:   IPR020568
- InterPro:   IPR014721
- InterPro:   IPR000100
- Gene3D:   G3DSA:3.30.230.10
- ProDom:   PD003629
- TIGRFAMs:   TIGR00188

Pfam domain/function: PF00825 Ribonuclease_P; SSF54211 Ribosomal_S5_D2-typ_fold

EC number: =3.1.26.5

Molecular weight: Translated: 12885; Mature: 12885

Theoretical pI: Translated: 12.35; Mature: 12.35

Prosite motif: PS00648 RIBONUCLEASE_P

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLPARYRMTRSTEFSTTVSKGVRSAQPDLVLHMANVLDDPSGPRVGLVVAKSVGNAVVRH
CCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCEEEEEEHHHHHHHHHHH
RVSRRLRHSVHPMLDELQPGHRLVIRALPGAASATSARLHQELSAALRRARPRVEASA
HHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MLPARYRMTRSTEFSTTVSKGVRSAQPDLVLHMANVLDDPSGPRVGLVVAKSVGNAVVRH
CCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCEEEEEEHHHHHHHHHHH
RVSRRLRHSVHPMLDELQPGHRLVIRALPGAASATSARLHQELSAALRRARPRVEASA
HHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA