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The map label for this gene is yebA [H]

Identifier: 119855058

GI number: 119855058

Start: 176770

End: 177792

Strand: Reverse

Name: yebA [H]

Synonym: Mkms_5669

Alternate gene names: 119855058

Gene position: 177792-176770 (Counterclockwise)

Preceding gene: 119855065

Following gene: 119855057

Centisome position: 58.85

GC content: 66.57

Gene sequence:

>1023_bases
TTGGTGCATCACCGGATTGCGCGACCGGATGCGGCGGCCGATCGTGGGGCCACCGACGTCACCGAGATCATCGCCTTCGG
CGAGTTCGGCGCGTTGATGGATATGGCCAGTTGTCGCAGCGATCCGTTCGCCATCGACTTCGAGGTGTTGAGCGCACCTG
AACTCGACGACCTCAACGATTTGGCTGATGAGTCGCCCCGGCTGTTGCTCGCACCGACAGGTTCGACGAACGCAGCGCCG
CCGACCGTGCCGATTCACGTCGGCGGGGCACATCTTCGGGAATGCCCACGGCCGTCTCGCCGGGCGCTGTCGGGTAGTAA
CGTCCGCGCTTCTGGCGGGGCGCATCGAAAGACCCCTCAGGCCGCCGGTGCGGCGCACAGCAGGCTGGTCATCACGGCTA
TCGCCGTCGGCGCGGTCGCCGCCGCAGCGAACGCAGCGGTCGACGAAACGGAGGCGCAGCAGCCGGTTTTGGTCGCCGAC
ACTGCGGCGTCCCCGGCCGCCCTCCCCGGCCCCTCGGGGATGCAGATCGTCCCAGTGGCGAACAGCTTTGATGCCGGGAT
CCATCTACAGGAATTGGTCAACGGCACGGCCTTCGCGCAGGAGCGGGCGCAGCGCGAGGCGCGGCTTCGGCGCCCACAGT
TCAGCTTTCCCGCCCGAGGCATTTTGACTTCGCGCTTTGGAGCCCGGTGGGGCACCCTGCACGCTGGCCTCGACATCGCC
AACGCCGTCGGTTCTCCGATCTACGCCGCATCCGACGGGGAGGTCATTGCCTCCGGTCCGACACCGGGTTTCGGCATGTG
GGTCAAAATCCGCGCTGCGGACGGCACGGTTACCCTCTACGGTCACATCGACACCACCATGGTGCAAACGGGCCAGCGGG
TGATGGCAGGCGACCAGATCGCCACCATGGGCAACCGAGGCAACTCGACCGGACCGCACCTGCACTTCGAGGTGCATCTC
AATGGAACTGACAAGATCGACCCGATGGCGTGGTTGGGGGAACGGGGCGTCCCCAACGACTAG

Upstream 100 bases:

>100_bases
GGGCGTTCATCGACGGTCGACGGCTTGCCCAATCGCGGGCGTTCGGTTAGCGTCTCGCCAACCAGATAACGAATCGGTAA
CGGCAAAGGATCGTCTCGAA

Downstream 100 bases:

>100_bases
GGCCGCTGCCCGACCGGCTCCACAATGCGAGCACAGTCAGCTACTGACGTCCTCAGTAGAATCGTGCCGAGCCCGGCTGG
GCGCTGCGCATTCGCAGTCG

Product: peptidase M23B

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 340; Mature: 340

Protein sequence:

>340_residues
MVHHRIARPDAAADRGATDVTEIIAFGEFGALMDMASCRSDPFAIDFEVLSAPELDDLNDLADESPRLLLAPTGSTNAAP
PTVPIHVGGAHLRECPRPSRRALSGSNVRASGGAHRKTPQAAGAAHSRLVITAIAVGAVAAAANAAVDETEAQQPVLVAD
TAASPAALPGPSGMQIVPVANSFDAGIHLQELVNGTAFAQERAQREARLRRPQFSFPARGILTSRFGARWGTLHAGLDIA
NAVGSPIYAASDGEVIASGPTPGFGMWVKIRAADGTVTLYGHIDTTMVQTGQRVMAGDQIATMGNRGNSTGPHLHFEVHL
NGTDKIDPMAWLGERGVPND

Sequences:

>Translated_340_residues
MVHHRIARPDAAADRGATDVTEIIAFGEFGALMDMASCRSDPFAIDFEVLSAPELDDLNDLADESPRLLLAPTGSTNAAP
PTVPIHVGGAHLRECPRPSRRALSGSNVRASGGAHRKTPQAAGAAHSRLVITAIAVGAVAAAANAAVDETEAQQPVLVAD
TAASPAALPGPSGMQIVPVANSFDAGIHLQELVNGTAFAQERAQREARLRRPQFSFPARGILTSRFGARWGTLHAGLDIA
NAVGSPIYAASDGEVIASGPTPGFGMWVKIRAADGTVTLYGHIDTTMVQTGQRVMAGDQIATMGNRGNSTGPHLHFEVHL
NGTDKIDPMAWLGERGVPND
>Mature_340_residues
MVHHRIARPDAAADRGATDVTEIIAFGEFGALMDMASCRSDPFAIDFEVLSAPELDDLNDLADESPRLLLAPTGSTNAAP
PTVPIHVGGAHLRECPRPSRRALSGSNVRASGGAHRKTPQAAGAAHSRLVITAIAVGAVAAAANAAVDETEAQQPVLVAD
TAASPAALPGPSGMQIVPVANSFDAGIHLQELVNGTAFAQERAQREARLRRPQFSFPARGILTSRFGARWGTLHAGLDIA
NAVGSPIYAASDGEVIASGPTPGFGMWVKIRAADGTVTLYGHIDTTMVQTGQRVMAGDQIATMGNRGNSTGPHLHFEVHL
NGTDKIDPMAWLGERGVPND

Specific function: Could be involved in cell wall degradation or formation [H]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI87081989, Length=88, Percent_Identity=43.1818181818182, Blast_Score=81, Evalue=1e-16,
Organism=Escherichia coli, GI1789099, Length=123, Percent_Identity=36.5853658536585, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI87082297, Length=129, Percent_Identity=32.5581395348837, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI87082174, Length=104, Percent_Identity=38.4615384615385, Blast_Score=69, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR013731
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF08525 OapA_N; PF01551 Peptidase_M23 [H]

EC number: 3.4.24.- [C]

Molecular weight: Translated: 35412; Mature: 35412

Theoretical pI: Translated: 6.23; Mature: 6.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVHHRIARPDAAADRGATDVTEIIAFGEFGALMDMASCRSDPFAIDFEVLSAPELDDLND
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCHHH
LADESPRLLLAPTGSTNAAPPTVPIHVGGAHLRECPRPSRRALSGSNVRASGGAHRKTPQ
HHCCCCCEEEEECCCCCCCCCEEEEEECCHHHHHCCCHHHHCCCCCCEECCCCCCCCCCH
AAGAAHSRLVITAIAVGAVAAAANAAVDETEAQQPVLVADTAASPAALPGPSGMQIVPVA
HHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCEEEEEC
NSFDAGIHLQELVNGTAFAQERAQREARLRRPQFSFPARGILTSRFGARWGTLHAGLDIA
CCCCCCEEHHHHHCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCCCCCHHCCCHHH
NAVGSPIYAASDGEVIASGPTPGFGMWVKIRAADGTVTLYGHIDTTMVQTGQRVMAGDQI
HHCCCCEEECCCCCEEECCCCCCCEEEEEEEECCCEEEEEECCCHHHHHCCCCHHCCCEE
ATMGNRGNSTGPHLHFEVHLNGTDKIDPMAWLGERGVPND
EECCCCCCCCCCEEEEEEEECCCCCCCHHHHHCCCCCCCC
>Mature Secondary Structure
MVHHRIARPDAAADRGATDVTEIIAFGEFGALMDMASCRSDPFAIDFEVLSAPELDDLND
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCHHH
LADESPRLLLAPTGSTNAAPPTVPIHVGGAHLRECPRPSRRALSGSNVRASGGAHRKTPQ
HHCCCCCEEEEECCCCCCCCCEEEEEECCHHHHHCCCHHHHCCCCCCEECCCCCCCCCCH
AAGAAHSRLVITAIAVGAVAAAANAAVDETEAQQPVLVADTAASPAALPGPSGMQIVPVA
HHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCEEEEEC
NSFDAGIHLQELVNGTAFAQERAQREARLRRPQFSFPARGILTSRFGARWGTLHAGLDIA
CCCCCCEEHHHHHCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCCCCCHHCCCHHH
NAVGSPIYAASDGEVIASGPTPGFGMWVKIRAADGTVTLYGHIDTTMVQTGQRVMAGDQI
HHCCCCEEECCCCCEEECCCCCCCEEEEEEEECCCEEEEEECCCHHHHHCCCCHHCCCEE
ATMGNRGNSTGPHLHFEVHLNGTDKIDPMAWLGERGVPND
EECCCCCCCCCCEEEEEEEECCCCCCCHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]