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The map label for this gene is ligT [C]

Identifier: 119900143

GI number: 119900143

Start: 4223747

End: 4224304

Strand: Direct

Name: ligT [C]

Synonym: azo3854

Alternate gene names: 119900143

Gene position: 4223747-4224304 (Clockwise)

Preceding gene: 119900142

Following gene: 119900144

Centisome position: 96.52

GC content: 75.09

Gene sequence:

>558_bases
ATGGCGGCTGGCCCCGCGTTGACCGACGCGGCGCGGCCGGCGCGGCTGTTTCTTGCGCTGTGGCCCGACGCGGCGACACG
TCGCACGCTGGCACAGGCGCGCGACCAGTGGCGCTGGGAACAGGGCAGCGCCCCGCGCAGCCCGGCGCCGGTGCGCAGCG
ACAAGCTCCACCTCACGCTGCATTTCATCGGCAATGTCGACCGCAGCCGGCTGCCGGCGCTGCAGGCCGGACTGGCGGTC
GCCTGCAGCGCCTTCGAACTCGCCTTCGGCCGCCATGCGCTGTGGGCGCGCGGCATTGCGGTGCTGGAACCGCTGGCGCT
GCCGCCCGCGCTGCTCGCGCTGCACGGTGCGCTCGGCGACGCTCTGCGGGACCTCGGCCTGCCGGTGGAACAGCGGCCGT
TCCGCCCGCATGTCACGCTGGCGCGCCACGCGCGCAACGCGCTCCCTCCGCTCCACACCCCGCCCTTCACCTGGCGCCCC
GCCGGTTATGCGCTGGTCGAAAGCCGGCTCGACGCCGGCGGCGGCTACCACCCGCTGACGCACTACCCCTGCCGCTGA

Upstream 100 bases:

>100_bases
TGAAGGTGCTCGACCGGCTCGACATCCGCCCCCGCCACGGCCGCGCCCAGGATGCCGACGACCCGCTGCACGCGGCGCGC
GCGGCGGAGCTGACCTCGCT

Downstream 100 bases:

>100_bases
ACCGCCGCACCAACCCCGGGCCGGACGGCGCATTGCCGGCGCGGCGCCGGCAACAAAAGCATCATGGGGGCGTCATGCGC
GACTGGCACGCTGGCGGTCT

Product: 2'-5' RNA ligase

Products: NA

Alternate protein names: 2 5' RNA Ligase

Number of amino acids: Translated: 185; Mature: 184

Protein sequence:

>185_residues
MAAGPALTDAARPARLFLALWPDAATRRTLAQARDQWRWEQGSAPRSPAPVRSDKLHLTLHFIGNVDRSRLPALQAGLAV
ACSAFELAFGRHALWARGIAVLEPLALPPALLALHGALGDALRDLGLPVEQRPFRPHVTLARHARNALPPLHTPPFTWRP
AGYALVESRLDAGGGYHPLTHYPCR

Sequences:

>Translated_185_residues
MAAGPALTDAARPARLFLALWPDAATRRTLAQARDQWRWEQGSAPRSPAPVRSDKLHLTLHFIGNVDRSRLPALQAGLAV
ACSAFELAFGRHALWARGIAVLEPLALPPALLALHGALGDALRDLGLPVEQRPFRPHVTLARHARNALPPLHTPPFTWRP
AGYALVESRLDAGGGYHPLTHYPCR
>Mature_184_residues
AAGPALTDAARPARLFLALWPDAATRRTLAQARDQWRWEQGSAPRSPAPVRSDKLHLTLHFIGNVDRSRLPALQAGLAVA
CSAFELAFGRHALWARGIAVLEPLALPPALLALHGALGDALRDLGLPVEQRPFRPHVTLARHARNALPPLHTPPFTWRPA
GYALVESRLDAGGGYHPLTHYPCR

Specific function: Specifically Ligates tRNA Half-Molecules Containing Nucleoside Base Modifications And Shows A Preference Among Different tRNA Species. Acts In The Absence Of ATP To Form A 2'-5' Phosphodiester Linkage. [C]

COG id: COG1514

COG function: function code J; 2'-5' RNA ligase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 6.5.1.- [C]

Molecular weight: Translated: 20143; Mature: 20012

Theoretical pI: Translated: 11.37; Mature: 11.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAAGPALTDAARPARLFLALWPDAATRRTLAQARDQWRWEQGSAPRSPAPVRSDKLHLTL
CCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEE
HFIGNVDRSRLPALQAGLAVACSAFELAFGRHALWARGIAVLEPLALPPALLALHGALGD
EEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
ALRDLGLPVEQRPFRPHVTLARHARNALPPLHTPPFTWRPAGYALVESRLDAGGGYHPLT
HHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCC
HYPCR
CCCCC
>Mature Secondary Structure 
AAGPALTDAARPARLFLALWPDAATRRTLAQARDQWRWEQGSAPRSPAPVRSDKLHLTL
CCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEE
HFIGNVDRSRLPALQAGLAVACSAFELAFGRHALWARGIAVLEPLALPPALLALHGALGD
EEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
ALRDLGLPVEQRPFRPHVTLARHARNALPPLHTPPFTWRPAGYALVESRLDAGGGYHPLT
HHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCC
HYPCR
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA