| Definition | Azoarcus sp. BH72 chromosome, complete genome. |
|---|---|
| Accession | NC_008702 |
| Length | 4,376,040 |
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The map label for this gene is mrcA [H]
Identifier: 119899940
GI number: 119899940
Start: 4010609
End: 4012981
Strand: Direct
Name: mrcA [H]
Synonym: azo3651
Alternate gene names: 119899940
Gene position: 4010609-4012981 (Clockwise)
Preceding gene: 119899928
Following gene: 119899942
Centisome position: 91.65
GC content: 67.21
Gene sequence:
>2373_bases ATGCGCTGGGTTCTCTACCCCCTGGCAGCCCTGACCGCACTGGTGATTCTCGGCGTTGCAACCCTGGCCGCCATCTCGCT GCTGGCCTGGCCCAACCTGCCGTCGCTCGAGACCCTTACCGATTACCGCCCCCGCATCCCGTTGCGGATCTACACCGCGG ACGGCCACCTGCTGGGCGAGTTCGGCGAGGAGCGGCGCTCGGTGGTCCGAATCGAGTCGGTTCCTCCGGCGCTCAAGCAA GCCATCCTCGCGGCGGAGGACGAGCGCTTCTACGAGCATCCCGGCATCGACCTGATCGGCATCATGCGGGCGGCGCTCGC CAATATTACTTCCGGCGGACGTGGGCAGGGAGCTTCGACCATCACCATGCAGGTCGCGCGGAACTTTTTCCTGTCGCGGG AGAAAACCTTCAACCGAAAGTTCTACGAGATCCTCCTTGCGCTCAAGATCGAGCGCAGCCTGACCAAGGATCAGATCCTC GAGCTGTACGTCAATCAGATCTACCTCGGCCAGCGCGCCTACGGCTTTTCCGCCGCTGCGCGGGCGTACTACGGCAAGGA TCTGGGGCAGATCACGCTCGCGGAGGCGGCCATGCTTGCCGGTTTGCCGAAGGCGCCGTCCGCCTACAACCCGATCGCCA ACCCGGCGCGGGCAGCGCTGCGCCAGCAGTACGTGTTGCGGCGGATGCTCGAGGCGGGTTTCATCGACGAAGCGGCCTAT CGCGTCGCCGCAAACGCACCGAAAACGGCACCGGCCGCCAGCACGGCCAAGAACACCTCGGTGCTGCACGGGGATTACGT TGCGGAAATGGCGCGCCAGCTCGCCGTGGAGCAGTTCGGTGAGGACGCGTATCACCTCGGCATCCGGATTGTGACTACGG TGACCCGCGCCGATCAGGAGGCTGCCTACGCGGCCTTGCGCAAGGGGGTCATGGACTACGACCGCCGCCACGGCTACCGC GGTCCGGAAGCCTTCGTCGAGCTGCCGGCCGGCCGCGACCCCGAGACCCTGGACGACCTCCTCGCCGACTTCAGCGATCA TGACGACTTGCTGGTCGGTCTTGTGGTGGAAGCGGCACCCAAGAAGGTGCGGGTGTACCGCCACGGCGAGACACTCACGA TCGCCGGCGACGGCCTCAAGTTCGTTCAACCGATGCTGGACGAAAAGGCTCCGCAGTCGCGCCGGCTGCGCCCCGGCGCC GTCGTCCGCCTGCGTGAAGTCGACGACAAGGGCTGGGAGATCGTGCAGCTGCCGGACGTGCAGGCGGCGCTCGTTTCAGT CGACTCGCATACCGGCGCCGTCCGCGCACTCATCGGCGGCTTCGACTTCAACCGCAACAAGTTCAACCACGTCACCCAGG CGCAGCGCCAGCCGGGATCCAGCTTCAAGCCCTTCATCTACTCGGCGGCGCTCGAACGCGGCTATGCGCCCGGCAGCCTG GTGGACGACTCGCCGCTCTATTTCCCTGCGGGCGTCACCGGCAGCCAGGCCTGGGAACCCAAGAACTACGATGGCAAGTT CGATGGCCTGATGACCCTGCGCGACGCACTGGCGCGCTCGAAGAACATGGTGTCGATCCGACTGCTGCAGAACATCACGC CGACCTATGCGCAGGACTACGTGGGCCGGTTCGGCTTCGACCCCGCGCGTCACCCTCCCTACCTGACGATGGCGCTCGGC GCGGGCTCGGTGACCCCGTGGGAAATGGCGACCGCCTACTCCGTGTTCGCCAATGGGGGCTACCGCATCGAACCCTATGT GGTGAAGGAAATGTACGACGGCAACGGCCGTCTGGTGGCGCGGACCGACCCTCCAGTGGCCGGCGAGAGCGCCCCCCGCG TGATCGACCCACGCAACGCCTGGTTGATGGATTCGATGATGCAGGACGTCGTCCGGCGCGGCACCGCCACTCGCGCGCGC ACGCTCAACCGTTCCGATCTGGCGGGCAAGACCGGCACCACCAACGACTACCTCGACGCCTGGTTCTGCGGCTACAACCC GGACCTCGTGGCCGTGGCCTGGGTCGGCTTCAGCCAGCCTCGCAACATGGGCCGGGGCGAAACCGGCGGCGCAGCGGCGC TCCCGATCTGGATCAACTACATGAAGACCGCGCTGCAGGGCCGCCCCGAGACCTCGCAACCGCGCCCGGACGGGCTGCTG GCGGTGCCTGCCGGCGACGGAAGCCGCGAAGACTACATCTACGAAGAGAACAAGCCGGTCGCGCCGCCCCCGCGCGAAGA CCTGCCCTCCAGTCTGTTCTCGGACCGCTCGCCGGCGCTGGAAGCCCCCGAGGAAGCCATCCCGCCCGCGCCCCCGGTCC ACCAGGCGCCGGCCCCGGTCGTCGAACGGGTGCCGGTTCCGGTCAATCGCTAG
Upstream 100 bases:
>100_bases CGGGAGCCTGCACTATCGTCATATGAGGTCACAGCCGCCTTGAAGATGCCTCGCGGGCGCCCCGTATAATGCCGACCCCA CACAACTTTCGGGAAATCCC
Downstream 100 bases:
>100_bases ACGGCGCCAGTGCGACGGGGTGGCCGCCCTGCTCGCTCACCACGCGGGAGATCACGGCGTAAAGATCTTCCGCGGCGTCG CGGGTCGATACCCATCGCCC
Product: penicillin-binding protein 1A
Products: NA
Alternate protein names: PBP-1a; PBP1a; Penicillin-insensitive transglycosylase; Peptidoglycan TGase; Penicillin-sensitive transpeptidase; DD-transpeptidase [H]
Number of amino acids: Translated: 790; Mature: 790
Protein sequence:
>790_residues MRWVLYPLAALTALVILGVATLAAISLLAWPNLPSLETLTDYRPRIPLRIYTADGHLLGEFGEERRSVVRIESVPPALKQ AILAAEDERFYEHPGIDLIGIMRAALANITSGGRGQGASTITMQVARNFFLSREKTFNRKFYEILLALKIERSLTKDQIL ELYVNQIYLGQRAYGFSAAARAYYGKDLGQITLAEAAMLAGLPKAPSAYNPIANPARAALRQQYVLRRMLEAGFIDEAAY RVAANAPKTAPAASTAKNTSVLHGDYVAEMARQLAVEQFGEDAYHLGIRIVTTVTRADQEAAYAALRKGVMDYDRRHGYR GPEAFVELPAGRDPETLDDLLADFSDHDDLLVGLVVEAAPKKVRVYRHGETLTIAGDGLKFVQPMLDEKAPQSRRLRPGA VVRLREVDDKGWEIVQLPDVQAALVSVDSHTGAVRALIGGFDFNRNKFNHVTQAQRQPGSSFKPFIYSAALERGYAPGSL VDDSPLYFPAGVTGSQAWEPKNYDGKFDGLMTLRDALARSKNMVSIRLLQNITPTYAQDYVGRFGFDPARHPPYLTMALG AGSVTPWEMATAYSVFANGGYRIEPYVVKEMYDGNGRLVARTDPPVAGESAPRVIDPRNAWLMDSMMQDVVRRGTATRAR TLNRSDLAGKTGTTNDYLDAWFCGYNPDLVAVAWVGFSQPRNMGRGETGGAAALPIWINYMKTALQGRPETSQPRPDGLL AVPAGDGSREDYIYEENKPVAPPPREDLPSSLFSDRSPALEAPEEAIPPAPPVHQAPAPVVERVPVPVNR
Sequences:
>Translated_790_residues MRWVLYPLAALTALVILGVATLAAISLLAWPNLPSLETLTDYRPRIPLRIYTADGHLLGEFGEERRSVVRIESVPPALKQ AILAAEDERFYEHPGIDLIGIMRAALANITSGGRGQGASTITMQVARNFFLSREKTFNRKFYEILLALKIERSLTKDQIL ELYVNQIYLGQRAYGFSAAARAYYGKDLGQITLAEAAMLAGLPKAPSAYNPIANPARAALRQQYVLRRMLEAGFIDEAAY RVAANAPKTAPAASTAKNTSVLHGDYVAEMARQLAVEQFGEDAYHLGIRIVTTVTRADQEAAYAALRKGVMDYDRRHGYR GPEAFVELPAGRDPETLDDLLADFSDHDDLLVGLVVEAAPKKVRVYRHGETLTIAGDGLKFVQPMLDEKAPQSRRLRPGA VVRLREVDDKGWEIVQLPDVQAALVSVDSHTGAVRALIGGFDFNRNKFNHVTQAQRQPGSSFKPFIYSAALERGYAPGSL VDDSPLYFPAGVTGSQAWEPKNYDGKFDGLMTLRDALARSKNMVSIRLLQNITPTYAQDYVGRFGFDPARHPPYLTMALG AGSVTPWEMATAYSVFANGGYRIEPYVVKEMYDGNGRLVARTDPPVAGESAPRVIDPRNAWLMDSMMQDVVRRGTATRAR TLNRSDLAGKTGTTNDYLDAWFCGYNPDLVAVAWVGFSQPRNMGRGETGGAAALPIWINYMKTALQGRPETSQPRPDGLL AVPAGDGSREDYIYEENKPVAPPPREDLPSSLFSDRSPALEAPEEAIPPAPPVHQAPAPVVERVPVPVNR >Mature_790_residues MRWVLYPLAALTALVILGVATLAAISLLAWPNLPSLETLTDYRPRIPLRIYTADGHLLGEFGEERRSVVRIESVPPALKQ AILAAEDERFYEHPGIDLIGIMRAALANITSGGRGQGASTITMQVARNFFLSREKTFNRKFYEILLALKIERSLTKDQIL ELYVNQIYLGQRAYGFSAAARAYYGKDLGQITLAEAAMLAGLPKAPSAYNPIANPARAALRQQYVLRRMLEAGFIDEAAY RVAANAPKTAPAASTAKNTSVLHGDYVAEMARQLAVEQFGEDAYHLGIRIVTTVTRADQEAAYAALRKGVMDYDRRHGYR GPEAFVELPAGRDPETLDDLLADFSDHDDLLVGLVVEAAPKKVRVYRHGETLTIAGDGLKFVQPMLDEKAPQSRRLRPGA VVRLREVDDKGWEIVQLPDVQAALVSVDSHTGAVRALIGGFDFNRNKFNHVTQAQRQPGSSFKPFIYSAALERGYAPGSL VDDSPLYFPAGVTGSQAWEPKNYDGKFDGLMTLRDALARSKNMVSIRLLQNITPTYAQDYVGRFGFDPARHPPYLTMALG AGSVTPWEMATAYSVFANGGYRIEPYVVKEMYDGNGRLVARTDPPVAGESAPRVIDPRNAWLMDSMMQDVVRRGTATRAR TLNRSDLAGKTGTTNDYLDAWFCGYNPDLVAVAWVGFSQPRNMGRGETGGAAALPIWINYMKTALQGRPETSQPRPDGLL AVPAGDGSREDYIYEENKPVAPPPREDLPSSLFSDRSPALEAPEEAIPPAPPVHQAPAPVVERVPVPVNR
Specific function: Cell wall formation. Synthesis of cross-linked peptidoglycan from the lipid intermediates. The enzyme has a penicillin-insensitive transglycosylase N-terminal domain (formation of linear glycan strands) and a penicillin-sensitive transpeptidase C-terminal
COG id: COG5009
COG function: function code M; Membrane carboxypeptidase/penicillin-binding protein
Gene ontology:
Cell location: Cell inner membrane; Single-pass type II membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: In the C-terminal section; belongs to the transpeptidase family [H]
Homologues:
Organism=Escherichia coli, GI87082258, Length=843, Percent_Identity=37.6037959667853, Blast_Score=496, Evalue=1e-141, Organism=Escherichia coli, GI1786343, Length=254, Percent_Identity=36.6141732283465, Blast_Score=134, Evalue=3e-32, Organism=Escherichia coli, GI1788867, Length=191, Percent_Identity=40.3141361256544, Blast_Score=118, Evalue=1e-27, Organism=Escherichia coli, GI1789601, Length=165, Percent_Identity=35.1515151515151, Blast_Score=100, Evalue=5e-22,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012338 - InterPro: IPR001264 - InterPro: IPR011816 - InterPro: IPR001460 [H]
Pfam domain/function: PF00912 Transgly; PF00905 Transpeptidase [H]
EC number: 2.4.2.-; 3.4.-.-
Molecular weight: Translated: 86699; Mature: 86699
Theoretical pI: Translated: 7.14; Mature: 7.14
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.1 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.1 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRWVLYPLAALTALVILGVATLAAISLLAWPNLPSLETLTDYRPRIPLRIYTADGHLLGE CCEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCEEEEECCCCCHHH FGEERRSVVRIESVPPALKQAILAAEDERFYEHPGIDLIGIMRAALANITSGGRGQGAST HHHHHHHEEEECCCCHHHHHHHHHHCCHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCHH ITMQVARNFFLSREKTFNRKFYEILLALKIERSLTKDQILELYVNQIYLGQRAYGFSAAA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCHHHHH RAYYGKDLGQITLAEAAMLAGLPKAPSAYNPIANPARAALRQQYVLRRMLEAGFIDEAAY HHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHH RVAANAPKTAPAASTAKNTSVLHGDYVAEMARQLAVEQFGEDAYHLGIRIVTTVTRADQE HHHCCCCCCCCCCCCCCCCEEECHHHHHHHHHHHHHHHHCCCHHHHCEEEEEEEHHHHHH AAYAALRKGVMDYDRRHGYRGPEAFVELPAGRDPETLDDLLADFSDHDDLLVGLVVEAAP HHHHHHHHHHHHHHHHCCCCCCHHHEECCCCCCHHHHHHHHHCCCCCCCCEEHHHHHCCC KKVRVYRHGETLTIAGDGLKFVQPMLDEKAPQSRRLRPGAVVRLREVDDKGWEIVQLPDV CEEEEEECCCEEEEECCCHHHHHHHHHCCCCHHCCCCCCCEEEEEECCCCCCEEEECCCC QAALVSVDSHTGAVRALIGGFDFNRNKFNHVTQAQRQPGSSFKPFIYSAALERGYAPGSL CEEEEEECCCCCHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCC VDDSPLYFPAGVTGSQAWEPKNYDGKFDGLMTLRDALARSKNMVSIRLLQNITPTYAQDY CCCCCCEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEHHHCCHHHHHHH VGRFGFDPARHPPYLTMALGAGSVTPWEMATAYSVFANGGYRIEPYVVKEMYDGNGRLVA HHHCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHCCCCEEECEEEEEEEECCCCEEEE RTDPPVAGESAPRVIDPRNAWLMDSMMQDVVRRGTATRARTLNRSDLAGKTGTTNDYLDA ECCCCCCCCCCCCEECCCCHHHHHHHHHHHHHCCCCHHHHHCCCHHCCCCCCCCCCCCHH WFCGYNPDLVAVAWVGFSQPRNMGRGETGGAAALPIWINYMKTALQGRPETSQPRPDGLL EECCCCCCEEEEEEECCCCCCCCCCCCCCCCEEHHHHHHHHHHHHCCCCCCCCCCCCCEE AVPAGDGSREDYIYEENKPVAPPPREDLPSSLFSDRSPALEAPEEAIPPAPPVHQAPAPV EEECCCCCCCCCEEECCCCCCCCCHHHCCHHHHCCCCCCCCCCHHHCCCCCCCCCCCCCH VERVPVPVNR HHCCCCCCCC >Mature Secondary Structure MRWVLYPLAALTALVILGVATLAAISLLAWPNLPSLETLTDYRPRIPLRIYTADGHLLGE CCEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCEEEEECCCCCHHH FGEERRSVVRIESVPPALKQAILAAEDERFYEHPGIDLIGIMRAALANITSGGRGQGAST HHHHHHHEEEECCCCHHHHHHHHHHCCHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCHH ITMQVARNFFLSREKTFNRKFYEILLALKIERSLTKDQILELYVNQIYLGQRAYGFSAAA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCHHHHH RAYYGKDLGQITLAEAAMLAGLPKAPSAYNPIANPARAALRQQYVLRRMLEAGFIDEAAY HHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHH RVAANAPKTAPAASTAKNTSVLHGDYVAEMARQLAVEQFGEDAYHLGIRIVTTVTRADQE HHHCCCCCCCCCCCCCCCCEEECHHHHHHHHHHHHHHHHCCCHHHHCEEEEEEEHHHHHH AAYAALRKGVMDYDRRHGYRGPEAFVELPAGRDPETLDDLLADFSDHDDLLVGLVVEAAP HHHHHHHHHHHHHHHHCCCCCCHHHEECCCCCCHHHHHHHHHCCCCCCCCEEHHHHHCCC KKVRVYRHGETLTIAGDGLKFVQPMLDEKAPQSRRLRPGAVVRLREVDDKGWEIVQLPDV CEEEEEECCCEEEEECCCHHHHHHHHHCCCCHHCCCCCCCEEEEEECCCCCCEEEECCCC QAALVSVDSHTGAVRALIGGFDFNRNKFNHVTQAQRQPGSSFKPFIYSAALERGYAPGSL CEEEEEECCCCCHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCC VDDSPLYFPAGVTGSQAWEPKNYDGKFDGLMTLRDALARSKNMVSIRLLQNITPTYAQDY CCCCCCEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEHHHCCHHHHHHH VGRFGFDPARHPPYLTMALGAGSVTPWEMATAYSVFANGGYRIEPYVVKEMYDGNGRLVA HHHCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHCCCCEEECEEEEEEEECCCCEEEE RTDPPVAGESAPRVIDPRNAWLMDSMMQDVVRRGTATRARTLNRSDLAGKTGTTNDYLDA ECCCCCCCCCCCCEECCCCHHHHHHHHHHHHHCCCCHHHHHCCCHHCCCCCCCCCCCCHH WFCGYNPDLVAVAWVGFSQPRNMGRGETGGAAALPIWINYMKTALQGRPETSQPRPDGLL EECCCCCCEEEEEEECCCCCCCCCCCCCCCCEEHHHHHHHHHHHHCCCCCCCCCCCCCEE AVPAGDGSREDYIYEENKPVAPPPREDLPSSLFSDRSPALEAPEEAIPPAPPVHQAPAPV EEECCCCCCCCCEEECCCCCCCCCHHHCCHHHHCCCCCCCCCCHHHCCCCCCCCCCCCCH VERVPVPVNR HHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: Transferases; Acyltransferases; Aminoacyltransferases [C]
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA