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The map label for this gene is psd

Identifier: 119899838

GI number: 119899838

Start: 3893550

End: 3894416

Strand: Reverse

Name: psd

Synonym: azo3549

Alternate gene names: 119899838

Gene position: 3894416-3893550 (Counterclockwise)

Preceding gene: 119899839

Following gene: 119899835

Centisome position: 88.99

GC content: 68.17

Gene sequence:

>867_bases
GTGTCCGACCGACTCGCCGTCCTGCCGCAGTACCTGCTGCCCAAGCAGCGCCTGACCCTGTTCATGGGCAGACTTGCCGG
CGCCCGCGCCGGCTCGCTCACCACCGCCGTGATCCGCTGGTTCATCGCCCGTTACGGGGTGGACATGAGCGAGGCCGAGA
ATCCGGACCCGGCCGCTTACGCGAGCTTCAACGAGTTCTTCACCCGCCCGCTGCGCGCCGGTGCGCGTCCGCTGGCGCAG
GCGGATTTCATCTGCCCGGTGGACGGCGCGATCAGCCAGTTCGGTGCGATCGAACGCGACCAGATCTTCCAGGCCAAGGG
CCACCGCTACACCACCACGGCGCTGCTGGGCGGCGACCGCGAGCTGGCGACGCATTTCGACCATGGCCACTTCGCCACCC
TCTACCTCAGCCCGCGCGACTACCACCGTATCCACATGCCTTGCGCGGGGCGGCTGACGCGGATGATCCATGTGCCGGGC
GAGCTGTTCTCGGTCAATCCCACCACCGCACGCGGCGTGCCCGGCCTCTTCGCCCGCAACGAGCGGGTGGTGTGCGTGTT
CGACGGCGAACACGGTCCCTTCGTGATGGTGCTGGTCGGCGCCACCATCGTCGGCAGCATGGCCACGGTGTGGCACGGCG
TGGTCAATTCCCCCCGCCCGGGCATGATCCGCGACTGGCGCTACCCGGAAGGCCAGGTGGTGCTGGGGCAGGGCGAGGAG
ATGGGCCGTTTCCTGCTCGGCTCCACCGTGGTGATGCTGTTCCCGCAGGATTGCCTCCGCTTCAATGCGGAGTGGGCGCC
GGAAAAGGCGATCCGGTTGGGCGAGAAGATGGGCGATCTTTTCTCCTGCACCCCGCAGGCCGTCTAA

Upstream 100 bases:

>100_bases
ACCGCGCGGGGTGCGGCGCGCTCCCACCTGCGGATGCGCCCGGATGCGGGCCGCATCGCCGCTATAATCCGCCGCTTCGT
CCAGCCCGAGAGCCCGCAAG

Downstream 100 bases:

>100_bases
GGCGCAGCTGTCGCTTCGGCGTCCGGCAGGCCGAAGTGCAGCAGCGGGTCCGGCCCGCTGCGCGCCGGGTCCAGCCGCGC
CTGCAGGAAGCCGAAGATCG

Product: phosphatidylserine decarboxylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 288; Mature: 287

Protein sequence:

>288_residues
MSDRLAVLPQYLLPKQRLTLFMGRLAGARAGSLTTAVIRWFIARYGVDMSEAENPDPAAYASFNEFFTRPLRAGARPLAQ
ADFICPVDGAISQFGAIERDQIFQAKGHRYTTTALLGGDRELATHFDHGHFATLYLSPRDYHRIHMPCAGRLTRMIHVPG
ELFSVNPTTARGVPGLFARNERVVCVFDGEHGPFVMVLVGATIVGSMATVWHGVVNSPRPGMIRDWRYPEGQVVLGQGEE
MGRFLLGSTVVMLFPQDCLRFNAEWAPEKAIRLGEKMGDLFSCTPQAV

Sequences:

>Translated_288_residues
MSDRLAVLPQYLLPKQRLTLFMGRLAGARAGSLTTAVIRWFIARYGVDMSEAENPDPAAYASFNEFFTRPLRAGARPLAQ
ADFICPVDGAISQFGAIERDQIFQAKGHRYTTTALLGGDRELATHFDHGHFATLYLSPRDYHRIHMPCAGRLTRMIHVPG
ELFSVNPTTARGVPGLFARNERVVCVFDGEHGPFVMVLVGATIVGSMATVWHGVVNSPRPGMIRDWRYPEGQVVLGQGEE
MGRFLLGSTVVMLFPQDCLRFNAEWAPEKAIRLGEKMGDLFSCTPQAV
>Mature_287_residues
SDRLAVLPQYLLPKQRLTLFMGRLAGARAGSLTTAVIRWFIARYGVDMSEAENPDPAAYASFNEFFTRPLRAGARPLAQA
DFICPVDGAISQFGAIERDQIFQAKGHRYTTTALLGGDRELATHFDHGHFATLYLSPRDYHRIHMPCAGRLTRMIHVPGE
LFSVNPTTARGVPGLFARNERVVCVFDGEHGPFVMVLVGATIVGSMATVWHGVVNSPRPGMIRDWRYPEGQVVLGQGEEM
GRFLLGSTVVMLFPQDCLRFNAEWAPEKAIRLGEKMGDLFSCTPQAV

Specific function: Unknown

COG id: COG0688

COG function: function code I; Phosphatidylserine decarboxylase

Gene ontology:

Cell location: Membrane-Associated [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phosphatidylserine decarboxylase family. Type 1 subfamily

Homologues:

Organism=Homo sapiens, GI13489112, Length=300, Percent_Identity=33.6666666666667, Blast_Score=133, Evalue=2e-31,
Organism=Escherichia coli, GI1790604, Length=251, Percent_Identity=56.5737051792829, Blast_Score=286, Evalue=9e-79,
Organism=Caenorhabditis elegans, GI71980843, Length=225, Percent_Identity=34.2222222222222, Blast_Score=120, Evalue=9e-28,
Organism=Caenorhabditis elegans, GI71980840, Length=225, Percent_Identity=34.2222222222222, Blast_Score=119, Evalue=1e-27,
Organism=Saccharomyces cerevisiae, GI6321609, Length=242, Percent_Identity=26.4462809917355, Blast_Score=98, Evalue=2e-21,
Organism=Saccharomyces cerevisiae, GI6324160, Length=160, Percent_Identity=37.5, Blast_Score=87, Evalue=4e-18,
Organism=Drosophila melanogaster, GI24649526, Length=282, Percent_Identity=32.6241134751773, Blast_Score=131, Evalue=4e-31,
Organism=Drosophila melanogaster, GI24649528, Length=282, Percent_Identity=32.6241134751773, Blast_Score=131, Evalue=4e-31,
Organism=Drosophila melanogaster, GI24649524, Length=282, Percent_Identity=32.6241134751773, Blast_Score=131, Evalue=4e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): PSD_AZOSB (A1KBF9)

Other databases:

- EMBL:   AM406670
- RefSeq:   YP_935051.1
- STRING:   A1KBF9
- GeneID:   4608002
- GenomeReviews:   AM406670_GR
- KEGG:   azo:azo3549
- eggNOG:   COG0688
- HOGENOM:   HBG302256
- OMA:   MATVWHG
- PhylomeDB:   A1KBF9
- ProtClustDB:   PRK00044
- BioCyc:   ASP62928:AZO3549-MONOMER
- HAMAP:   MF_00662
- InterPro:   IPR003817
- InterPro:   IPR005221
- PANTHER:   PTHR10067
- TIGRFAMs:   TIGR00163

Pfam domain/function: PF02666 PS_Dcarbxylase

EC number: =4.1.1.65

Molecular weight: Translated: 31882; Mature: 31751

Theoretical pI: Translated: 8.23; Mature: 8.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDRLAVLPQYLLPKQRLTLFMGRLAGARAGSLTTAVIRWFIARYGVDMSEAENPDPAAY
CCCCHHHCHHHHCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHCCCCCCHHH
ASFNEFFTRPLRAGARPLAQADFICPVDGAISQFGAIERDQIFQAKGHRYTTTALLGGDR
HHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHCCCEEEEEEEECCCH
ELATHFDHGHFATLYLSPRDYHRIHMPCAGRLTRMIHVPGELFSVNPTTARGVPGLFARN
HHHHHCCCCCEEEEEECCCCCEEEECCHHHHHHEEEECCCCEEECCCCCCCCCCCCEECC
ERVVCVFDGEHGPFVMVLVGATIVGSMATVWHGVVNSPRPGMIRDWRYPEGQVVLGQGEE
CEEEEEEECCCCCEEEEEEHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCEEECCCHH
MGRFLLGSTVVMLFPQDCLRFNAEWAPEKAIRLGEKMGDLFSCTPQAV
HHHHHHHCEEEEEECHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
SDRLAVLPQYLLPKQRLTLFMGRLAGARAGSLTTAVIRWFIARYGVDMSEAENPDPAAY
CCCHHHCHHHHCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHCCCCCCHHH
ASFNEFFTRPLRAGARPLAQADFICPVDGAISQFGAIERDQIFQAKGHRYTTTALLGGDR
HHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHCCCEEEEEEEECCCH
ELATHFDHGHFATLYLSPRDYHRIHMPCAGRLTRMIHVPGELFSVNPTTARGVPGLFARN
HHHHHCCCCCEEEEEECCCCCEEEECCHHHHHHEEEECCCCEEECCCCCCCCCCCCEECC
ERVVCVFDGEHGPFVMVLVGATIVGSMATVWHGVVNSPRPGMIRDWRYPEGQVVLGQGEE
CEEEEEEECCCCCEEEEEEHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCEEECCCHH
MGRFLLGSTVVMLFPQDCLRFNAEWAPEKAIRLGEKMGDLFSCTPQAV
HHHHHHHCEEEEEECHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA