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The map label for this gene is lpsB [H]

Identifier: 119899563

GI number: 119899563

Start: 3611287

End: 3612462

Strand: Reverse

Name: lpsB [H]

Synonym: azo3274

Alternate gene names: 119899563

Gene position: 3612462-3611287 (Counterclockwise)

Preceding gene: 119899564

Following gene: 119899562

Centisome position: 82.55

GC content: 68.96

Gene sequence:

>1176_bases
ATGAACGATCGCCGCCCGCTGATCATGCATGTGGTGTACAGCTTCGATGTCGGCGGGCTCGAGAACGGGGTCGTCAACCT
CATCAACCGGCTGCCCGAAGATGATTTCCGTCACAGCGTCGTCGCGCTGACCCGCTGTGCTCCGGCCTTTTGCGAACGCG
TTACGCGCCGCGATGTGGACTTCATCTCGCTGCACAAGCCGCAGGGGCACGGCATCCAGCTCTATCCCGCGCTCTACCGG
CTGTTCCGCGCGCGTCGGCCGGCGGTGGTGCACACCCGCAACCTGGCCGCGCTGGAAGCGGTGGTGCCGGCTTGGGCCGC
GCGGGTCCCGGTCCGAATTCATGGTGAGCACGGCTGGGACGCCTCCGATCCCGATGGACGCAGCCGCAAGTTCCAGTGGA
TGCGCCGGCTCTACACCCCTTTCGTCAGCCGCTACGTGGCCCTGTCCGGCCATCTGGAGCGTTATCTGCACGACGCGGTG
GGTATTTCCCCGGCGCGCATCGAACGCATCTGCAACGGCGTCGATACGCGCCGCTTCCAGGTCGCTCGCCCCCGCGCCCT
TATCGCCGGCGCACCCGTAGGGGCGGATGGCGAGATCGTGGTTGGCACGGTCGGCCGCCTGCAGACGGTCAAGGACCAGG
TCAATCTCGTGCGGGCTTTCGCGCTCGCCTTGCAGCAGGCGCCTGACGTGACGGGAGCGCGCCTGGTGATTGCCGGCGAT
GGGCCCCAGCGCGCCCAGGTCGAGGCCGAGATCGCACGGAGCGGCATCGGCGAGCGGGTGTGGCTCGCCGGTGAGCGCAA
GGATGTCCCGGATGTCATGCGGGGGCTGGACGTCTTCGTGTTACCGTCGCTTGCCGAGGGCATTTCGAACACCATCCTGG
AAGCGATGGCCTGCGGGCTGCCGGTGCTGGCCACCGATGTGGGCGGCAATGCGGAGCTGGTCGCGGCCGGGGACACCGGA
GGGCTGGTGCCGCCGGCCGACAGCCAGGCGATGGCCACTGCCTTGATCGCCTACCTGCGCCACCCGGCGCTGCGCCAGCG
TCACGGGGAGGCCGGACGGCGGCGCGCGGAAGCAGTGTTCAGCCTGGACGGCATGATCAACCGTTACCACGCCCTGTACG
ACAACCTGCTCGCGGCGGCCGGCCAGCCGCGCGAAGCCGTCGGCAACCCGACCTGA

Upstream 100 bases:

>100_bases
CCGAAGGCGATGACAACGGCGCGGATGAAGCCATTGCGGCGCTGCTCGCGCAGCACCAGGACGGAATTGTCACCGCCGTC
AGCCAAGCGGAGCGCGCACG

Downstream 100 bases:

>100_bases
CGAGAGGAAGACCCTAAGCATGTGCGGAATCGCCGGCCTGTTCGATACCCGGGGCAAACGCGACTTCGACCGCGGCCTGA
TGTCGCGCATGAACGACATC

Product: glycosyltransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 391; Mature: 391

Protein sequence:

>391_residues
MNDRRPLIMHVVYSFDVGGLENGVVNLINRLPEDDFRHSVVALTRCAPAFCERVTRRDVDFISLHKPQGHGIQLYPALYR
LFRARRPAVVHTRNLAALEAVVPAWAARVPVRIHGEHGWDASDPDGRSRKFQWMRRLYTPFVSRYVALSGHLERYLHDAV
GISPARIERICNGVDTRRFQVARPRALIAGAPVGADGEIVVGTVGRLQTVKDQVNLVRAFALALQQAPDVTGARLVIAGD
GPQRAQVEAEIARSGIGERVWLAGERKDVPDVMRGLDVFVLPSLAEGISNTILEAMACGLPVLATDVGGNAELVAAGDTG
GLVPPADSQAMATALIAYLRHPALRQRHGEAGRRRAEAVFSLDGMINRYHALYDNLLAAAGQPREAVGNPT

Sequences:

>Translated_391_residues
MNDRRPLIMHVVYSFDVGGLENGVVNLINRLPEDDFRHSVVALTRCAPAFCERVTRRDVDFISLHKPQGHGIQLYPALYR
LFRARRPAVVHTRNLAALEAVVPAWAARVPVRIHGEHGWDASDPDGRSRKFQWMRRLYTPFVSRYVALSGHLERYLHDAV
GISPARIERICNGVDTRRFQVARPRALIAGAPVGADGEIVVGTVGRLQTVKDQVNLVRAFALALQQAPDVTGARLVIAGD
GPQRAQVEAEIARSGIGERVWLAGERKDVPDVMRGLDVFVLPSLAEGISNTILEAMACGLPVLATDVGGNAELVAAGDTG
GLVPPADSQAMATALIAYLRHPALRQRHGEAGRRRAEAVFSLDGMINRYHALYDNLLAAAGQPREAVGNPT
>Mature_391_residues
MNDRRPLIMHVVYSFDVGGLENGVVNLINRLPEDDFRHSVVALTRCAPAFCERVTRRDVDFISLHKPQGHGIQLYPALYR
LFRARRPAVVHTRNLAALEAVVPAWAARVPVRIHGEHGWDASDPDGRSRKFQWMRRLYTPFVSRYVALSGHLERYLHDAV
GISPARIERICNGVDTRRFQVARPRALIAGAPVGADGEIVVGTVGRLQTVKDQVNLVRAFALALQQAPDVTGARLVIAGD
GPQRAQVEAEIARSGIGERVWLAGERKDVPDVMRGLDVFVLPSLAEGISNTILEAMACGLPVLATDVGGNAELVAAGDTG
GLVPPADSQAMATALIAYLRHPALRQRHGEAGRRRAEAVFSLDGMINRYHALYDNLLAAAGQPREAVGNPT

Specific function: Acts at transfer of mannose group to a 3-deoxy-D-mono octulonic acid (KDO) via an alpha-1,5 linkage [H]

COG id: COG0438

COG function: function code M; Glycosyltransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 1 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001296 [H]

Pfam domain/function: PF00534 Glycos_transf_1 [H]

EC number: NA

Molecular weight: Translated: 42610; Mature: 42610

Theoretical pI: Translated: 9.38; Mature: 9.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNDRRPLIMHVVYSFDVGGLENGVVNLINRLPEDDFRHSVVALTRCAPAFCERVTRRDVD
CCCCCCEEEEEEECCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
FISLHKPQGHGIQLYPALYRLFRARRPAVVHTRNLAALEAVVPAWAARVPVRIHGEHGWD
EEEEECCCCCCEEHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCEEEECCCCCC
ASDPDGRSRKFQWMRRLYTPFVSRYVALSGHLERYLHDAVGISPARIERICNGVDTRRFQ
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCEE
VARPRALIAGAPVGADGEIVVGTVGRLQTVKDQVNLVRAFALALQQAPDVTGARLVIAGD
ECCCCEEEECCCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECC
GPQRAQVEAEIARSGIGERVWLAGERKDVPDVMRGLDVFVLPSLAEGISNTILEAMACGL
CCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHCCCCCEEHHHHHHHHHHHHHHHHHCCC
PVLATDVGGNAELVAAGDTGGLVPPADSQAMATALIAYLRHPALRQRHGEAGRRRAEAVF
CEEEECCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCHHHHHHCCHHHHHHHHHHH
SLDGMINRYHALYDNLLAAAGQPREAVGNPT
HHHHHHHHHHHHHHHHHHHCCCCHHHCCCCC
>Mature Secondary Structure
MNDRRPLIMHVVYSFDVGGLENGVVNLINRLPEDDFRHSVVALTRCAPAFCERVTRRDVD
CCCCCCEEEEEEECCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
FISLHKPQGHGIQLYPALYRLFRARRPAVVHTRNLAALEAVVPAWAARVPVRIHGEHGWD
EEEEECCCCCCEEHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCEEEECCCCCC
ASDPDGRSRKFQWMRRLYTPFVSRYVALSGHLERYLHDAVGISPARIERICNGVDTRRFQ
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCEE
VARPRALIAGAPVGADGEIVVGTVGRLQTVKDQVNLVRAFALALQQAPDVTGARLVIAGD
ECCCCEEEECCCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECC
GPQRAQVEAEIARSGIGERVWLAGERKDVPDVMRGLDVFVLPSLAEGISNTILEAMACGL
CCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHCCCCCEEHHHHHHHHHHHHHHHHHCCC
PVLATDVGGNAELVAAGDTGGLVPPADSQAMATALIAYLRHPALRQRHGEAGRRRAEAVF
CEEEECCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCHHHHHHCCHHHHHHHHHHH
SLDGMINRYHALYDNLLAAAGQPREAVGNPT
HHHHHHHHHHHHHHHHHHHCCCCHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Glycosyltransferases; Hexosyltransferases [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11157937; 11481430 [H]