Click here to switch to the map view.

The map label for this gene is yibD [C]

Identifier: 119899548

GI number: 119899548

Start: 3592004

End: 3592930

Strand: Reverse

Name: yibD [C]

Synonym: azo3259

Alternate gene names: 119899548

Gene position: 3592930-3592004 (Counterclockwise)

Preceding gene: 119899553

Following gene: 119899541

Centisome position: 82.1

GC content: 61.92

Gene sequence:

>927_bases
ATGAGTTCGACGCCGTCGGACCCCGCCATCTCTGTTGTGGTCTGTACCCGTAACAGGGGCGGGCAGCTAGAGGGCATGCT
GCGCAGTTTTTGCAGCCAAGACTTTGCCGTCGGGTGGGAGATGGTGGTGGTGGACAACGGTTCGTCTGACAACACGGGTG
AGGTCCTGACCCGCTTTGCTCTGGAATGTCCGTTTACGTTGCGTGTGGTGCTGGAGCCAACTCCGGGCTTGTCACGCGCC
CGCAACCGGGGCCTTGCCGCGGCGAGAGGCGAGTTCGTGGCCTTCACCGACGACGACTGCTATCCCCGGGACGACTATTT
GTCCGCCATCGTGGCGCTTTTTTGTGATCCTAAGGTGGTGTACGGCGGTGGGCGGCTCTTGCTCTACGATCCGACGGATC
AGCGCGTCACGATACAGGAGCGGGATCGCGCTGAAGTGCTTGAGCCCGGCAGCTTCATTCCCTCCGGTCTGATACATGGC
GCCAACCTCGTATGCCGGCGACAGGCTCTGCTCGACCTCGACGGCTTTGACGAGCGCCTCGGCGCTGGCACAACGTATAA
GTCGGGCGAAGACACGGACATCCTTAGGCGCCTAGCCCTTGCCGGTCACCGGGGTAGATACGATCCGGACATCGTTGTGT
ACCATCATCATGGACGGAAGACGGTGGAGGCGGCACGCCGGCTGGAGCAGGGCTACTCCTGGGGTATCGGTTCGTGCATG
CTCAAGTACGCGCTGAATCCGCAGAGTCGTTCCATCTACGCGCGAATTTGGTACTGGCGCCTGCGGCGTATCCCGTTTGC
TGATGCGGTTCGGGAAATCGTTGCGGCGTTGCGGTTCTTTCTGGAGTACGGCCCCACGTGGCGCAGCGTGTGGCGCCACC
CTCATGAGGGATTGGCTTCCCCCGTCGAGGCTCGAGAACCGGCATAA

Upstream 100 bases:

>100_bases
CGAGAACTTTGGCATGACTTGCATATGCCGGTCGCAACCGTATGCTACAAAGCAGGTTTGCGAACAACATGCCGCCGATT
GTCGGCCGAGGAGTCTTTAG

Downstream 100 bases:

>100_bases
CGCTCGCGGTGTACTGCGTAGGCTAGCGAATACCCAATGGCCCCTCGCAGTTCGCGCCACGTACGAGCCAGCGGTTGTTT
GAGAATCGTCCAGTACCAGT

Product: glycosyltransferase

Products: NA

Alternate protein names: ORF1 [H]

Number of amino acids: Translated: 308; Mature: 307

Protein sequence:

>308_residues
MSSTPSDPAISVVVCTRNRGGQLEGMLRSFCSQDFAVGWEMVVVDNGSSDNTGEVLTRFALECPFTLRVVLEPTPGLSRA
RNRGLAAARGEFVAFTDDDCYPRDDYLSAIVALFCDPKVVYGGGRLLLYDPTDQRVTIQERDRAEVLEPGSFIPSGLIHG
ANLVCRRQALLDLDGFDERLGAGTTYKSGEDTDILRRLALAGHRGRYDPDIVVYHHHGRKTVEAARRLEQGYSWGIGSCM
LKYALNPQSRSIYARIWYWRLRRIPFADAVREIVAALRFFLEYGPTWRSVWRHPHEGLASPVEAREPA

Sequences:

>Translated_308_residues
MSSTPSDPAISVVVCTRNRGGQLEGMLRSFCSQDFAVGWEMVVVDNGSSDNTGEVLTRFALECPFTLRVVLEPTPGLSRA
RNRGLAAARGEFVAFTDDDCYPRDDYLSAIVALFCDPKVVYGGGRLLLYDPTDQRVTIQERDRAEVLEPGSFIPSGLIHG
ANLVCRRQALLDLDGFDERLGAGTTYKSGEDTDILRRLALAGHRGRYDPDIVVYHHHGRKTVEAARRLEQGYSWGIGSCM
LKYALNPQSRSIYARIWYWRLRRIPFADAVREIVAALRFFLEYGPTWRSVWRHPHEGLASPVEAREPA
>Mature_307_residues
SSTPSDPAISVVVCTRNRGGQLEGMLRSFCSQDFAVGWEMVVVDNGSSDNTGEVLTRFALECPFTLRVVLEPTPGLSRAR
NRGLAAARGEFVAFTDDDCYPRDDYLSAIVALFCDPKVVYGGGRLLLYDPTDQRVTIQERDRAEVLEPGSFIPSGLIHGA
NLVCRRQALLDLDGFDERLGAGTTYKSGEDTDILRRLALAGHRGRYDPDIVVYHHHGRKTVEAARRLEQGYSWGIGSCML
KYALNPQSRSIYARIWYWRLRRIPFADAVREIVAALRFFLEYGPTWRSVWRHPHEGLASPVEAREPA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001173 [H]

Pfam domain/function: PF00535 Glycos_transf_2 [H]

EC number: 2.-.-.- [C]

Molecular weight: Translated: 34525; Mature: 34393

Theoretical pI: Translated: 7.14; Mature: 7.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSTPSDPAISVVVCTRNRGGQLEGMLRSFCSQDFAVGWEMVVVDNGSSDNTGEVLTRFA
CCCCCCCCCEEEEEEECCCCCCHHHHHHHHCCCHHCCCEEEEEEECCCCCCHHHHHHHHH
LECPFTLRVVLEPTPGLSRARNRGLAAARGEFVAFTDDDCYPRDDYLSAIVALFCDPKVV
HCCCEEEEEEEECCCCHHHHHHCCCEECCCCEEEECCCCCCCCHHHHHHHHHHHCCCEEE
YGGGRLLLYDPTDQRVTIQERDRAEVLEPGSFIPSGLIHGANLVCRRQALLDLDGFDERL
EECCEEEEECCCCCEEEECCCCCHHHCCCCCCCCHHHHHCCHHHHHHHHHHCCCCCHHHH
GAGTTYKSGEDTDILRRLALAGHRGRYDPDIVVYHHHGRKTVEAARRLEQGYSWGIGSCM
CCCCCCCCCCCHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHCCCCCHHHHH
LKYALNPQSRSIYARIWYWRLRRIPFADAVREIVAALRFFLEYGPTWRSVWRHPHEGLAS
HHHHCCCCCCCHHHHHEEHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHCCCHHHCCC
PVEAREPA
CCCCCCCC
>Mature Secondary Structure 
SSTPSDPAISVVVCTRNRGGQLEGMLRSFCSQDFAVGWEMVVVDNGSSDNTGEVLTRFA
CCCCCCCCEEEEEEECCCCCCHHHHHHHHCCCHHCCCEEEEEEECCCCCCHHHHHHHHH
LECPFTLRVVLEPTPGLSRARNRGLAAARGEFVAFTDDDCYPRDDYLSAIVALFCDPKVV
HCCCEEEEEEEECCCCHHHHHHCCCEECCCCEEEECCCCCCCCHHHHHHHHHHHCCCEEE
YGGGRLLLYDPTDQRVTIQERDRAEVLEPGSFIPSGLIHGANLVCRRQALLDLDGFDERL
EECCEEEEECCCCCEEEECCCCCHHHCCCCCCCCHHHHHCCHHHHHHHHHHCCCCCHHHH
GAGTTYKSGEDTDILRRLALAGHRGRYDPDIVVYHHHGRKTVEAARRLEQGYSWGIGSCM
CCCCCCCCCCCHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHCCCCCHHHHH
LKYALNPQSRSIYARIWYWRLRRIPFADAVREIVAALRFFLEYGPTWRSVWRHPHEGLAS
HHHHCCCCCCCHHHHHEEHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHCCCHHHCCC
PVEAREPA
CCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7836301 [H]