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The map label for this gene is ypjD [H]

Identifier: 119899522

GI number: 119899522

Start: 3563665

End: 3564489

Strand: Direct

Name: ypjD [H]

Synonym: azo3233

Alternate gene names: 119899522

Gene position: 3563665-3564489 (Clockwise)

Preceding gene: 119899516

Following gene: 119899523

Centisome position: 81.44

GC content: 65.45

Gene sequence:

>825_bases
ATGCCCCCGATTCTACTTCATCTCCTTCCCGCCTCGCTTTACGCCGGCCTCGGTGTCTGGTTCTGGCGCAGCTGCCTCAG
CGCGTCCGACCCGAAGGCCCGCCAGAGCATGAGCCGACCGGAACGGCTGCTGCTGCTCGCGGCGCTCGCCGTTCACGGAC
TCGCCCTGCGCGGCGCACTCTTTCCCGGCGACGAAATGCGCTTCGGTTTTGGCGTCGCGCTGTCCTTGATGGTCTGGCTC
GCCATCTGCTTTTACTGGGTGGAGACGCTCTACACACGGCTCGGCGGTCTGCACGCACTGGCGATGCCCGCCGGCGCGGT
CGCCAGCCTGATTCCCGCCCTGTTTCCCGGCCAGCACGTGCTCGCCAACGCGGCAACGCCAGGCTTTCGCGCCCACTTCA
TCGTCGCGATGCTTGCGTACAGCCTGTTCACGCTGGCGGCGCTGCACGCAATGCTGATGGCGTTCGCCGAGCGTCGATTG
CACGACGCCCGCTTCTCGAAGGCGCTTGCAACCCTGCCGCCACTGCTGACGATGGAAGCGCTGCTCTTCCGGCTGATCGG
CATTGCTTTCGTTCTGCTCACCTTCACGCTGCTGTCCGGCATCGTCTTCTCCGAGAACCTGTTCGGTCGCGCATTCCAGG
TCGACCACAAGACCGTTTTCGCTTTCATTTCCTGGCTGCTGTTCGGTGCCCTGCTGGTCGGCCGGAAGGTCCGCGGCTGG
CGCGGCCGGCTGGCGCTGCGGTGGACACTGGCAGGCTTCGTGACCTTGATGCTCGCCTATGTCGGCAGCCGCTTCGTCAT
CGAGGTGCTGCTTCACCGCACCTGA

Upstream 100 bases:

>100_bases
CAGTGTCTTAACGACCTTGGAAAGGCGCTGAGTGAGATTGTCGAGCATGTTCGCGGGGAGCCTTCGGGCCGGGATGACTT
GGAGTAAACTGCAGCAACGT

Downstream 100 bases:

>100_bases
CGATGGTGATATCCCGTCCGCTTGCTTCTCACGCTGCCCGCGCTCCCTTTACAAGGCCGGGAGCCAAGTGCAAGATCGCA
TGTCAGTCAGTTAAGAGTGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 274; Mature: 273

Protein sequence:

>274_residues
MPPILLHLLPASLYAGLGVWFWRSCLSASDPKARQSMSRPERLLLLAALAVHGLALRGALFPGDEMRFGFGVALSLMVWL
AICFYWVETLYTRLGGLHALAMPAGAVASLIPALFPGQHVLANAATPGFRAHFIVAMLAYSLFTLAALHAMLMAFAERRL
HDARFSKALATLPPLLTMEALLFRLIGIAFVLLTFTLLSGIVFSENLFGRAFQVDHKTVFAFISWLLFGALLVGRKVRGW
RGRLALRWTLAGFVTLMLAYVGSRFVIEVLLHRT

Sequences:

>Translated_274_residues
MPPILLHLLPASLYAGLGVWFWRSCLSASDPKARQSMSRPERLLLLAALAVHGLALRGALFPGDEMRFGFGVALSLMVWL
AICFYWVETLYTRLGGLHALAMPAGAVASLIPALFPGQHVLANAATPGFRAHFIVAMLAYSLFTLAALHAMLMAFAERRL
HDARFSKALATLPPLLTMEALLFRLIGIAFVLLTFTLLSGIVFSENLFGRAFQVDHKTVFAFISWLLFGALLVGRKVRGW
RGRLALRWTLAGFVTLMLAYVGSRFVIEVLLHRT
>Mature_273_residues
PPILLHLLPASLYAGLGVWFWRSCLSASDPKARQSMSRPERLLLLAALAVHGLALRGALFPGDEMRFGFGVALSLMVWLA
ICFYWVETLYTRLGGLHALAMPAGAVASLIPALFPGQHVLANAATPGFRAHFIVAMLAYSLFTLAALHAMLMAFAERRLH
DARFSKALATLPPLLTMEALLFRLIGIAFVLLTFTLLSGIVFSENLFGRAFQVDHKTVFAFISWLLFGALLVGRKVRGWR
GRLALRWTLAGFVTLMLAYVGSRFVIEVLLHRT

Specific function: Unknown

COG id: COG4137

COG function: function code R; ABC-type uncharacterized transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI145693174, Length=225, Percent_Identity=31.5555555555556, Blast_Score=83, Evalue=2e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002541 [H]

Pfam domain/function: PF01578 Cytochrom_C_asm [H]

EC number: NA

Molecular weight: Translated: 30223; Mature: 30092

Theoretical pI: Translated: 11.51; Mature: 11.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPPILLHLLPASLYAGLGVWFWRSCLSASDPKARQSMSRPERLLLLAALAVHGLALRGAL
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHCCC
FPGDEMRFGFGVALSLMVWLAICFYWVETLYTRLGGLHALAMPAGAVASLIPALFPGQHV
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCHHHHHHHHHHHCCCHHH
LANAATPGFRAHFIVAMLAYSLFTLAALHAMLMAFAERRLHDARFSKALATLPPLLTMEA
HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
LLFRLIGIAFVLLTFTLLSGIVFSENLFGRAFQVDHKTVFAFISWLLFGALLVGRKVRGW
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
RGRLALRWTLAGFVTLMLAYVGSRFVIEVLLHRT
HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
PPILLHLLPASLYAGLGVWFWRSCLSASDPKARQSMSRPERLLLLAALAVHGLALRGAL
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHCCC
FPGDEMRFGFGVALSLMVWLAICFYWVETLYTRLGGLHALAMPAGAVASLIPALFPGQHV
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCHHHHHHHHHHHCCCHHH
LANAATPGFRAHFIVAMLAYSLFTLAALHAMLMAFAERRLHDARFSKALATLPPLLTMEA
HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
LLFRLIGIAFVLLTFTLLSGIVFSENLFGRAFQVDHKTVFAFISWLLFGALLVGRKVRGW
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
RGRLALRWTLAGFVTLMLAYVGSRFVIEVLLHRT
HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]