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The map label for this gene is 119899443

Identifier: 119899443

GI number: 119899443

Start: 3461877

End: 3462467

Strand: Reverse

Name: 119899443

Synonym: azo3153

Alternate gene names: NA

Gene position: 3462467-3461877 (Counterclockwise)

Preceding gene: 119899453

Following gene: 119899442

Centisome position: 79.12

GC content: 64.97

Gene sequence:

>591_bases
ATGACCGGCCTTCTCAAGGACTTACCGCTGGCTTCCCGGGTCGAACTCTCCGCGTTTCTCGCAGGCGTTGAAAAGCGCGC
GTTCAAGCAGGCCGTGTGGTCCTTGCGCGACGAGGAGGCCGCCCTCGATGCGGTCCAGGATGCAATGCTCAAGCTGTCGT
CGCGCTACGGCGATCGACCGGCCGACGAGCTGCCGATGCTGTTCCAGCGCATTCTCCAGAACGTCGTGCTGGACATGCAC
CGTCGACTGCGCGTCCGTCGCACCTGGGTGTCCCCGCTCTCTTCGCTGCAACTCGAGGCCGAGGAGGATAACGATCCGCT
CGACACGCTCGCGGCCGACTGCGCGCGTACCGACCGGGAGACGCCCCACGCGCAGTTCGAGCGCAAGCATCTGCTGGGTT
TGCTCGAACGGGAAATCGCGCGCTTGCCGAACCGTCAACGGGAGGCTTTCCTGTTGCGTTACTGGGAGGAGATGGACATC
GCCGAGACTGCTGCGGCGATGGGGTGTTCCGAAGGGAGCGTGAAAACGCACTGCTCGCGCGCCACGCACACGCTGGCGGC
GGCATTGAAGGCAAGGGGGGTGGGGCTATGA

Upstream 100 bases:

>100_bases
CCATCGAAAACTCGCTCAGTATCACGTTCAAGGAAACGACGAACGTTACCGTCCGCGGGGGGATTGGTCAAGGCTGCGGC
GCGCCGCGGCAGCGCGCCAG

Downstream 100 bases:

>100_bases
GCCTGCGGCGGCATGCCGATGACCGATTGACGGACGAAGATGCCACGGCGCGACGCATCGCAGCCTGCCTCGACCCGCTC
GCCCACGAGATCGATCCCGC

Product: RNA polymerase sigma factor

Products: NA

Alternate protein names: RNA Polymerase Sigma-24 Subunit ECF Subfamily; ECF Subfamily RNA Polymerase Sigma-24 Factor; Sigma-; RNA Polymerase Sigma Factor; RNA Polymerase Sigma Factor Transcription Regulator Protein; RNA Polymerase Sigma-E Factor; RNA Polymerase Sigma-70 Factor; Specialized Sigma Subunits Of RNA Polymerase; ECF Subfamily RNA Polymerase Sigma Factor

Number of amino acids: Translated: 196; Mature: 195

Protein sequence:

>196_residues
MTGLLKDLPLASRVELSAFLAGVEKRAFKQAVWSLRDEEAALDAVQDAMLKLSSRYGDRPADELPMLFQRILQNVVLDMH
RRLRVRRTWVSPLSSLQLEAEEDNDPLDTLAADCARTDRETPHAQFERKHLLGLLEREIARLPNRQREAFLLRYWEEMDI
AETAAAMGCSEGSVKTHCSRATHTLAAALKARGVGL

Sequences:

>Translated_196_residues
MTGLLKDLPLASRVELSAFLAGVEKRAFKQAVWSLRDEEAALDAVQDAMLKLSSRYGDRPADELPMLFQRILQNVVLDMH
RRLRVRRTWVSPLSSLQLEAEEDNDPLDTLAADCARTDRETPHAQFERKHLLGLLEREIARLPNRQREAFLLRYWEEMDI
AETAAAMGCSEGSVKTHCSRATHTLAAALKARGVGL
>Mature_195_residues
TGLLKDLPLASRVELSAFLAGVEKRAFKQAVWSLRDEEAALDAVQDAMLKLSSRYGDRPADELPMLFQRILQNVVLDMHR
RLRVRRTWVSPLSSLQLEAEEDNDPLDTLAADCARTDRETPHAQFERKHLLGLLEREIARLPNRQREAFLLRYWEEMDIA
ETAAAMGCSEGSVKTHCSRATHTLAAALKARGVGL

Specific function: Unknown

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22107; Mature: 21975

Theoretical pI: Translated: 6.68; Mature: 6.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTGLLKDLPLASRVELSAFLAGVEKRAFKQAVWSLRDEEAALDAVQDAMLKLSSRYGDRP
CCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
ADELPMLFQRILQNVVLDMHRRLRVRRTWVSPLSSLQLEAEEDNDPLDTLAADCARTDRE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCHHHHHHHHHHHCCCC
TPHAQFERKHLLGLLEREIARLPNRQREAFLLRYWEEMDIAETAAAMGCSEGSVKTHCSR
CCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
ATHTLAAALKARGVGL
HHHHHHHHHHHHCCCC
>Mature Secondary Structure 
TGLLKDLPLASRVELSAFLAGVEKRAFKQAVWSLRDEEAALDAVQDAMLKLSSRYGDRP
CCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
ADELPMLFQRILQNVVLDMHRRLRVRRTWVSPLSSLQLEAEEDNDPLDTLAADCARTDRE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCHHHHHHHHHHHCCCC
TPHAQFERKHLLGLLEREIARLPNRQREAFLLRYWEEMDIAETAAAMGCSEGSVKTHCSR
CCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
ATHTLAAALKARGVGL
HHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA