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The map label for this gene is ycjD [H]

Identifier: 119899357

GI number: 119899357

Start: 3376848

End: 3377219

Strand: Reverse

Name: ycjD [H]

Synonym: azo3067

Alternate gene names: 119899357

Gene position: 3377219-3376848 (Counterclockwise)

Preceding gene: 119899358

Following gene: 119899356

Centisome position: 77.18

GC content: 62.63

Gene sequence:

>372_bases
ATGCAAGGACGCAACACCCCGACCAAGAACTTCGCCCGCAACCTGCGCCGCAACTCCACCGACGCTGAACGAGTGCTCTG
GCGGCATCTGCGTGGTGGTCAGTTCGGCGCGAAGTTCCGCCGTCAGCATCCTTTCGCGGACTACGTGCTCGATTTCGTAT
GCCTTGAACTGAAGCTGGTGGTGGAACTCGATGGCGGGCAGCATGCCGAGCGCGTCGCGTATGACGATGCGCGTACCGCG
ATACTGCGGACGGCGGGCTTCGATGTAATTCGCTTCTGGAACAGCGAGGTATTTCAGGAGCCGGACGCGGTGGTGGAGCG
GTTGCGGTTGGTGATCGAGGGGCGGCGACCGTTGTTCGAAGCCCGCGGCTGA

Upstream 100 bases:

>100_bases
TCAAGGGGAGGGCTGGGGTGGGGATGGGGTAAACACGCCGCTTGCCGCCCCCACGAAACGCTGTAGATTCGTGACGTTGT
CATTATTCGCGTGCCCCACA

Downstream 100 bases:

>100_bases
CCCCATCCCCACCCTAGCCCTCCCCTTGAAGGGGAGGGGACTCAAACCGCCGCGTTCGGAAACGGCGATACGACAACCAT
GAGCCGGCGACAGAATCCGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 123; Mature: 123

Protein sequence:

>123_residues
MQGRNTPTKNFARNLRRNSTDAERVLWRHLRGGQFGAKFRRQHPFADYVLDFVCLELKLVVELDGGQHAERVAYDDARTA
ILRTAGFDVIRFWNSEVFQEPDAVVERLRLVIEGRRPLFEARG

Sequences:

>Translated_123_residues
MQGRNTPTKNFARNLRRNSTDAERVLWRHLRGGQFGAKFRRQHPFADYVLDFVCLELKLVVELDGGQHAERVAYDDARTA
ILRTAGFDVIRFWNSEVFQEPDAVVERLRLVIEGRRPLFEARG
>Mature_123_residues
MQGRNTPTKNFARNLRRNSTDAERVLWRHLRGGQFGAKFRRQHPFADYVLDFVCLELKLVVELDGGQHAERVAYDDARTA
ILRTAGFDVIRFWNSEVFQEPDAVVERLRLVIEGRRPLFEARG

Specific function: Unknown

COG id: COG2852

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To H.influenzae HI_1162 and to HI_0925 [H]

Homologues:

Organism=Escherichia coli, GI1787546, Length=110, Percent_Identity=50, Blast_Score=108, Evalue=1e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004603
- InterPro:   IPR007569
- InterPro:   IPR011335 [H]

Pfam domain/function: PF04480 DUF559 [H]

EC number: NA

Molecular weight: Translated: 14328; Mature: 14328

Theoretical pI: Translated: 10.29; Mature: 10.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQGRNTPTKNFARNLRRNSTDAERVLWRHLRGGQFGAKFRRQHPFADYVLDFVCLELKLV
CCCCCCCHHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHCCCHHHHHHHHHHHHHHHE
VELDGGQHAERVAYDDARTAILRTAGFDVIRFWNSEVFQEPDAVVERLRLVIEGRRPLFE
EEECCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCC
ARG
CCC
>Mature Secondary Structure
MQGRNTPTKNFARNLRRNSTDAERVLWRHLRGGQFGAKFRRQHPFADYVLDFVCLELKLV
CCCCCCCHHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHCCCHHHHHHHHHHHHHHHE
VELDGGQHAERVAYDDARTAILRTAGFDVIRFWNSEVFQEPDAVVERLRLVIEGRRPLFE
EEECCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCC
ARG
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 8075395; 1364817 [H]