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The map label for this gene is brkB [C]

Identifier: 119899352

GI number: 119899352

Start: 3371066

End: 3372010

Strand: Reverse

Name: brkB [C]

Synonym: azo3062

Alternate gene names: 119899352

Gene position: 3372010-3371066 (Counterclockwise)

Preceding gene: 119899353

Following gene: 119899351

Centisome position: 77.06

GC content: 71.32

Gene sequence:

>945_bases
ATGAAGACGGCGCTGCGTTACTGGAGCGGGGTGGCCAAGACGACCGTGCGGCTGTGGCTGGACGCGCAGGTCTTCGTGCA
TGCGGCGGCGCTCGCCTTCTTCACGGTGTTTTCGGTGGCGCCGGTGGTGATCGTGGTGGTCTCCATCGTCGGCACCGTGT
TGGGCGAGCGCGCGGCGCAGGGCGAGATCGCCGAGCAGCTGCAGTCGGTGATCGGGGCCGAGGCCGCGGCGGCGGTACAG
ACCGCGGTGGAGGGCAGCCGGATCGAGCGCAGCGGCATCCTGCCCACGCTCGCCGGCATCGGTGCGCTGCTGCTCGGCGC
CACCAGCGTGTTCGGCCAGATGCAGACCGCGCTCAACGCGATCTGGGGCGTGGCGCCCAAGCCCACGCGCAGCAGCGTGT
GGTTGTTGATCAAGGCGCGCCTGCTGTCGCTGACGGTGGTGCTGGCGATCGGTTTCGTGCTGCTGGTGTCGCTGTTGCTC
AGCGTGGCGGTGCAGGCGGTGGTGACGTTCGCGCAGGACTGGCTGCCGATACCCGGCGGGCTGCTCGTCGGGCTGGACAG
CGTGGTGTCGCTGGTGGTGGTGACGCTGCTGTTCGCCACCATCTTCCGCGTGCTGCCGGACGTGGTGCTGGGCTGGCGCG
ACGTGCTGCTCGGCGCCTTCGCCACCGCGCTGCTGTTTTCGCTCGGCCGCGGGCTGATCGCCACCTATCTGTCGACCACC
GCCACCGCCTCCACCTACGGCGCCGCCGGCTCGCTGGTGCTGCTGCTGATGTGGGTGAACTACTCCTCGCTGATCCTGCT
GTTCGGCGCGGCCTTCACGCGCGCGCACGTCGAGGCCCGCGGCCGCACGGTGCAGCCGCGCGCCACGGCCGTGGTGGTGC
ACCGCGAGCTGGTCGAGGCCGGCGGCGCGGTGCCGGCGGTGGCCGATTCGTCCACCGCGCGCTGA

Upstream 100 bases:

>100_bases
TCCTAGAATCGAGCCACGGACATGCTGCGGAGAGCGCAATGGAAAGGCGGGCGGCAAGCAGGGCGCGGGCGTGGCCCGGG
GCGGACCGGGAGGGCGCGCG

Downstream 100 bases:

>100_bases
GCCGGCGCGGCAGGCGGCGTGTCGAAGCCCGTTCCCCGCGCGGCCCGTCGACAGGCGCAGGGCGAAGGGCGCTCCGACGG
CTTGCCGGGGCGGTAATTGA

Product: exoribonuclease II

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 314; Mature: 314

Protein sequence:

>314_residues
MKTALRYWSGVAKTTVRLWLDAQVFVHAAALAFFTVFSVAPVVIVVVSIVGTVLGERAAQGEIAEQLQSVIGAEAAAAVQ
TAVEGSRIERSGILPTLAGIGALLLGATSVFGQMQTALNAIWGVAPKPTRSSVWLLIKARLLSLTVVLAIGFVLLVSLLL
SVAVQAVVTFAQDWLPIPGGLLVGLDSVVSLVVVTLLFATIFRVLPDVVLGWRDVLLGAFATALLFSLGRGLIATYLSTT
ATASTYGAAGSLVLLLMWVNYSSLILLFGAAFTRAHVEARGRTVQPRATAVVVHRELVEAGGAVPAVADSSTAR

Sequences:

>Translated_314_residues
MKTALRYWSGVAKTTVRLWLDAQVFVHAAALAFFTVFSVAPVVIVVVSIVGTVLGERAAQGEIAEQLQSVIGAEAAAAVQ
TAVEGSRIERSGILPTLAGIGALLLGATSVFGQMQTALNAIWGVAPKPTRSSVWLLIKARLLSLTVVLAIGFVLLVSLLL
SVAVQAVVTFAQDWLPIPGGLLVGLDSVVSLVVVTLLFATIFRVLPDVVLGWRDVLLGAFATALLFSLGRGLIATYLSTT
ATASTYGAAGSLVLLLMWVNYSSLILLFGAAFTRAHVEARGRTVQPRATAVVVHRELVEAGGAVPAVADSSTAR
>Mature_314_residues
MKTALRYWSGVAKTTVRLWLDAQVFVHAAALAFFTVFSVAPVVIVVVSIVGTVLGERAAQGEIAEQLQSVIGAEAAAAVQ
TAVEGSRIERSGILPTLAGIGALLLGATSVFGQMQTALNAIWGVAPKPTRSSVWLLIKARLLSLTVVLAIGFVLLVSLLL
SVAVQAVVTFAQDWLPIPGGLLVGLDSVVSLVVVTLLFATIFRVLPDVVLGWRDVLLGAFATALLFSLGRGLIATYLSTT
ATASTYGAAGSLVLLLMWVNYSSLILLFGAAFTRAHVEARGRTVQPRATAVVVHRELVEAGGAVPAVADSSTAR

Specific function: 3' To 5' Exoribonuclease Necessary For 3'Maturation Of tRNA Molecules. [C]

COG id: COG1295

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0761 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017039
- InterPro:   IPR004664 [H]

Pfam domain/function: PF03631 Ribonuclease_BN [H]

EC number: 3.1.-.- [C]

Molecular weight: Translated: 32740; Mature: 32740

Theoretical pI: Translated: 10.42; Mature: 10.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTALRYWSGVAKTTVRLWLDAQVFVHAAALAFFTVFSVAPVVIVVVSIVGTVLGERAAQ
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
GEIAEQLQSVIGAEAAAAVQTAVEGSRIERSGILPTLAGIGALLLGATSVFGQMQTALNA
CHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
IWGVAPKPTRSSVWLLIKARLLSLTVVLAIGFVLLVSLLLSVAVQAVVTFAQDWLPIPGG
HHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH
LLVGLDSVVSLVVVTLLFATIFRVLPDVVLGWRDVLLGAFATALLFSLGRGLIATYLSTT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ATASTYGAAGSLVLLLMWVNYSSLILLFGAAFTRAHVEARGRTVQPRATAVVVHRELVEA
HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCHHHHHHHHHHHHHC
GGAVPAVADSSTAR
CCCCCCCCCCCCCC
>Mature Secondary Structure
MKTALRYWSGVAKTTVRLWLDAQVFVHAAALAFFTVFSVAPVVIVVVSIVGTVLGERAAQ
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
GEIAEQLQSVIGAEAAAAVQTAVEGSRIERSGILPTLAGIGALLLGATSVFGQMQTALNA
CHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
IWGVAPKPTRSSVWLLIKARLLSLTVVLAIGFVLLVSLLLSVAVQAVVTFAQDWLPIPGG
HHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH
LLVGLDSVVSLVVVTLLFATIFRVLPDVVLGWRDVLLGAFATALLFSLGRGLIATYLSTT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ATASTYGAAGSLVLLLMWVNYSSLILLFGAAFTRAHVEARGRTVQPRATAVVVHRELVEA
HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCHHHHHHHHHHHHHC
GGAVPAVADSSTAR
CCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA