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The map label for this gene is ydcN [C]

Identifier: 119899299

GI number: 119899299

Start: 3307684

End: 3308286

Strand: Reverse

Name: ydcN [C]

Synonym: azo3009

Alternate gene names: 119899299

Gene position: 3308286-3307684 (Counterclockwise)

Preceding gene: 119899306

Following gene: 119899293

Centisome position: 75.6

GC content: 63.52

Gene sequence:

>603_bases
ATGGAAAACCTCACTGAAAAAAGCGCCCCCGTACTGGAAGAATCGGTCGGTGCCGTGATCCGCGAACTGCGCCTGAAAGA
AGGCCTGACCATTGCTCAAGTGGCTGAATTGGCAGGGATAAGCCGCGGCATGCTGTCGAAGATCGAGACCGGCAGCACGA
TGGCGGGCATGGATACGCTGGCGCGCATCGCGCGTTCGCTCGGGGTGGCGATGTCGGCGCTGTTCAGCCGCTACGACGCG
ACCACGGCGTCGGCGCAGCACGTGAAGGGCGGGGCAGGCATGGAAGTGGTGCGCCGTGGCACCAAAAGCGGGCATACCTA
CCACCTGCTGGCCTATGGCCAGGGGCCGGTGAAGGCCTTCGAACCCTTCCTGATCACCATGGAAGACGACAGCCAGACCT
ATCCCACCTTCCAGCATCCGGGCATGGAATTCCTCTACATGCTGGAAGGCCAGCTGGAATACCGCTGCGGCCAGCAGACC
TATCTGCTGGAGCCGGGCGATTCGCTGAGCTTCGACGGCGAGGCGCCGCACGGCCCGGCGAGGCTGACCCAGTGCCCGAT
CAAGTTCCTGTCGATCATCGTGTATCCGCGCGGCGCGGAGTGA

Upstream 100 bases:

>100_bases
AGCGCGAAGGACGTCGCCTTGTTTCTTGTAATGCAACATGTGTGCCTGTGAGGAATCATGCTCGATATGAAAAGCGGACG
CCAGCGCTTAAACTCGGGAC

Downstream 100 bases:

>100_bases
CTAAGGGCCCCCACGCTCCGCCTGCGTGCGGTCGCAAGCGCGCCGGCTTTGCACCGCCGGCCCGTTCCGCAGGCAGGGAG
CAGTGCTCCGCGAAATCCCT

Product: putative DNA binding helix-turn helix protein

Products: NA

Alternate protein names: Transcriptional Regulator XRE Family; XRE Family Transcriptional Regulator; Cupin 2 Domain-Containing Protein; Cupin 2 Conserved Barrel Domain Protein; HTH-Type Transcriptional Regulator; Helix-Turn-Helix Domain-Containing Protein; Regulatory Protein; Helix-Turn-Helix Domain Protein; Cro/CI Family Transcriptional Regulator; MerR Family Transcriptional Regulator; Transcriptional Regulator Protein; Cupin Domain Protein; Transcription Regulator; Transcriptional Regulator MerR Family; Transcriptional Regulator-Like Protein; Transcriptional Regulatory Protein; Epoxidase; Helix-Turn-Helix/Cupin Domain Protein; Cupin 2 Barrel Domain-Containing Protein; Transcriptional Regulator Merr Family; Helix-Turn-Helix Transcriptional Regulator; Helix-Turn-Helix Family Protein; Xre Family xin-Antitoxin System Antitoxin Component; Transcriptional Regulator HTH_3 Family; Transcriptional Regulator Protein LacI Family; Transcriptional Regulator Xre Family; XRE Family-Like Protein; Transcriptional Regulator XRE Family With Cupin Sensor

Number of amino acids: Translated: 200; Mature: 200

Protein sequence:

>200_residues
MENLTEKSAPVLEESVGAVIRELRLKEGLTIAQVAELAGISRGMLSKIETGSTMAGMDTLARIARSLGVAMSALFSRYDA
TTASAQHVKGGAGMEVVRRGTKSGHTYHLLAYGQGPVKAFEPFLITMEDDSQTYPTFQHPGMEFLYMLEGQLEYRCGQQT
YLLEPGDSLSFDGEAPHGPARLTQCPIKFLSIIVYPRGAE

Sequences:

>Translated_200_residues
MENLTEKSAPVLEESVGAVIRELRLKEGLTIAQVAELAGISRGMLSKIETGSTMAGMDTLARIARSLGVAMSALFSRYDA
TTASAQHVKGGAGMEVVRRGTKSGHTYHLLAYGQGPVKAFEPFLITMEDDSQTYPTFQHPGMEFLYMLEGQLEYRCGQQT
YLLEPGDSLSFDGEAPHGPARLTQCPIKFLSIIVYPRGAE
>Mature_200_residues
MENLTEKSAPVLEESVGAVIRELRLKEGLTIAQVAELAGISRGMLSKIETGSTMAGMDTLARIARSLGVAMSALFSRYDA
TTASAQHVKGGAGMEVVRRGTKSGHTYHLLAYGQGPVKAFEPFLITMEDDSQTYPTFQHPGMEFLYMLEGQLEYRCGQQT
YLLEPGDSLSFDGEAPHGPARLTQCPIKFLSIIVYPRGAE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21735; Mature: 21735

Theoretical pI: Translated: 5.63; Mature: 5.63

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MENLTEKSAPVLEESVGAVIRELRLKEGLTIAQVAELAGISRGMLSKIETGSTMAGMDTL
CCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
ARIARSLGVAMSALFSRYDATTASAQHVKGGAGMEVVRRGTKSGHTYHLLAYGQGPVKAF
HHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCHHHHHHCCCCCCEEEEEEECCCCCCCC
EPFLITMEDDSQTYPTFQHPGMEFLYMLEGQLEYRCGQQTYLLEPGDSLSFDGEAPHGPA
CCEEEEECCCCCCCCCCCCCCCEEEEEECCCCEEECCCEEEEECCCCCCCCCCCCCCCCH
RLTQCPIKFLSIIVYPRGAE
HHHHHHHHHHHEEECCCCCC
>Mature Secondary Structure
MENLTEKSAPVLEESVGAVIRELRLKEGLTIAQVAELAGISRGMLSKIETGSTMAGMDTL
CCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
ARIARSLGVAMSALFSRYDATTASAQHVKGGAGMEVVRRGTKSGHTYHLLAYGQGPVKAF
HHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCHHHHHHCCCCCCEEEEEEECCCCCCCC
EPFLITMEDDSQTYPTFQHPGMEFLYMLEGQLEYRCGQQTYLLEPGDSLSFDGEAPHGPA
CCEEEEECCCCCCCCCCCCCCCEEEEEECCCCEEECCCEEEEECCCCCCCCCCCCCCCCH
RLTQCPIKFLSIIVYPRGAE
HHHHHHHHHHHEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA