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The map label for this gene is pcaQ [H]

Identifier: 119899293

GI number: 119899293

Start: 3300977

End: 3302122

Strand: Reverse

Name: pcaQ [H]

Synonym: azo3003

Alternate gene names: 119899293

Gene position: 3302122-3300977 (Counterclockwise)

Preceding gene: 119899299

Following gene: 119899292

Centisome position: 75.46

GC content: 72.08

Gene sequence:

>1146_bases
ATGGACAGTATTATTTTTCGTGGCCCTGCGGATAATGGCGAGGACCTCCACGAACATGCGCCGCACACCATGCCCAGACC
TTCCACCTCCCGGTCCGCCGTCCAGGACCCCGCCCCCCAGGCCCAGCCCGATCGCCGCGTGCTGCCGGACCTGCACGCGC
TCGATACCTTCATGACGGTGTGCGAGTCGGGCTCGATGTCGCTTGCGGCGCAGCGCCTGGGGGTGAGCCAGAGCGCGGTC
AGCCAGCTGGTCAAGGCGCTGGAGCAGACCTACGGCGTGCAGCTGCTCGACCGCGACGTGCGCCCGGCGCGGCCCACGCG
CGCCGGCAACATCCTGCTGGAGATGGCCGAGGGCCTGCTGAGCGATGCGCGCAGCATCGCCGAGCGCCTGCGCCAGAGCG
TGCGCCAGGACCACGCGCAGATCCGCCTCGGCTGCGTGGATTCCTTCGCCGCCACGGTGGGACCGTCGCTGATCCGCGCG
CTGTCCGGCTCGGCCCGCGAGCTGCAGCTGTGGTCCGGCCTGACCCCCGGGCTGAATGCGCAACTGCTGGCGCGCGACCT
CGACCTCGCGGTGTGCACCGAAATCCCCGCCGATCCGCGGCTGATGCAGCACCTGCTGTTTGCCGAAGCCTGGGTGGCGG
TGTTTCCGCGCAACGTGGAGTGCCCCCCGCTCGACGAAGCGCGCGACCTCAAGCGCCGGCTGCCGCCGCTGCCGCTGATC
CGCTACACCCAGCGCTCGGTCATCGGCCAGCAGATCGAACGCTTCCTGCGCCACCTGGGGCTGGAGCTGCCGCGGCGCTT
CGCCTTCGACGCCACCGACCCGCTGCTCAGCGTGGTGGCGGCGGGCCTGGGCTGGGCGATCAGCACGCCGCTGTGCCTGT
GGCAGTCGCGCGCCTGGCTGGACCAGGTGCAGGTCGTGCCGCTGCCGCCGTCCAGGCTGGGCCAGCGCGAATTCCACCTG
CTGTGCCGCGATGCGCAGTGGGCGCCGACCGCCGCCGAGATCGCCCGCCTGACCCGTACCGCCCTGCTGCAGGACGTCGC
GCCGGCGCTGCGTCGCGTGATGCCGGCGCTGGCGACCGGAGCCGACCCCGGCCCGGCCCCCTTTCACATTCCCGACCACC
TCCCCGACCCGAGTCTGCCGCCATGA

Upstream 100 bases:

>100_bases
CAAATCTTTCCATGTCGACTCCAGGCGGTAAGGGGGTGCGAAAACATGGACGCCACTGTAGTCAGCGTGCTGGAGCTGCC
ACGCTGCTTAAGCAAATCTT

Downstream 100 bases:

>100_bases
CCCCACCCGTCTTCGAGCTCCACCAGGGCACGCAGCCGCTGCTGCTCTCCATCCCCCATCTGGGCACCCACCTGCCCGCC
GAGATCACGCCGGCGCTCGC

Product: hypothetical protein

Products: NA

Alternate protein names: Pca operon transcriptional activator [H]

Number of amino acids: Translated: 381; Mature: 381

Protein sequence:

>381_residues
MDSIIFRGPADNGEDLHEHAPHTMPRPSTSRSAVQDPAPQAQPDRRVLPDLHALDTFMTVCESGSMSLAAQRLGVSQSAV
SQLVKALEQTYGVQLLDRDVRPARPTRAGNILLEMAEGLLSDARSIAERLRQSVRQDHAQIRLGCVDSFAATVGPSLIRA
LSGSARELQLWSGLTPGLNAQLLARDLDLAVCTEIPADPRLMQHLLFAEAWVAVFPRNVECPPLDEARDLKRRLPPLPLI
RYTQRSVIGQQIERFLRHLGLELPRRFAFDATDPLLSVVAAGLGWAISTPLCLWQSRAWLDQVQVVPLPPSRLGQREFHL
LCRDAQWAPTAAEIARLTRTALLQDVAPALRRVMPALATGADPGPAPFHIPDHLPDPSLPP

Sequences:

>Translated_381_residues
MDSIIFRGPADNGEDLHEHAPHTMPRPSTSRSAVQDPAPQAQPDRRVLPDLHALDTFMTVCESGSMSLAAQRLGVSQSAV
SQLVKALEQTYGVQLLDRDVRPARPTRAGNILLEMAEGLLSDARSIAERLRQSVRQDHAQIRLGCVDSFAATVGPSLIRA
LSGSARELQLWSGLTPGLNAQLLARDLDLAVCTEIPADPRLMQHLLFAEAWVAVFPRNVECPPLDEARDLKRRLPPLPLI
RYTQRSVIGQQIERFLRHLGLELPRRFAFDATDPLLSVVAAGLGWAISTPLCLWQSRAWLDQVQVVPLPPSRLGQREFHL
LCRDAQWAPTAAEIARLTRTALLQDVAPALRRVMPALATGADPGPAPFHIPDHLPDPSLPP
>Mature_381_residues
MDSIIFRGPADNGEDLHEHAPHTMPRPSTSRSAVQDPAPQAQPDRRVLPDLHALDTFMTVCESGSMSLAAQRLGVSQSAV
SQLVKALEQTYGVQLLDRDVRPARPTRAGNILLEMAEGLLSDARSIAERLRQSVRQDHAQIRLGCVDSFAATVGPSLIRA
LSGSARELQLWSGLTPGLNAQLLARDLDLAVCTEIPADPRLMQHLLFAEAWVAVFPRNVECPPLDEARDLKRRLPPLPLI
RYTQRSVIGQQIERFLRHLGLELPRRFAFDATDPLLSVVAAGLGWAISTPLCLWQSRAWLDQVQVVPLPPSRLGQREFHL
LCRDAQWAPTAAEIARLTRTALLQDVAPALRRVMPALATGADPGPAPFHIPDHLPDPSLPP

Specific function: Activates transcription of the pcaDCHGB operon for the catabolism of the phenolic compound protocatechuate [H]

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR012787
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 41854; Mature: 41854

Theoretical pI: Translated: 7.05; Mature: 7.05

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDSIIFRGPADNGEDLHEHAPHTMPRPSTSRSAVQDPAPQAQPDRRVLPDLHALDTFMTV
CCCCEECCCCCCCCHHHHCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHH
CESGSMSLAAQRLGVSQSAVSQLVKALEQTYGVQLLDRDVRPARPTRAGNILLEMAEGLL
HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCHHHHHHHHHHHHHH
SDARSIAERLRQSVRQDHAQIRLGCVDSFAATVGPSLIRALSGSARELQLWSGLTPGLNA
HHHHHHHHHHHHHHHHHHHHEEHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCH
QLLARDLDLAVCTEIPADPRLMQHLLFAEAWVAVFPRNVECPPLDEARDLKRRLPPLPLI
HHHHHHCCHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCHH
RYTQRSVIGQQIERFLRHLGLELPRRFAFDATDPLLSVVAAGLGWAISTPLCLWQSRAWL
HHHHHHHHHHHHHHHHHHHCHHHHHHHCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHH
DQVQVVPLPPSRLGQREFHLLCRDAQWAPTAAEIARLTRTALLQDVAPALRRVMPALATG
HCCEEEECCHHHHCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
ADPGPAPFHIPDHLPDPSLPP
CCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MDSIIFRGPADNGEDLHEHAPHTMPRPSTSRSAVQDPAPQAQPDRRVLPDLHALDTFMTV
CCCCEECCCCCCCCHHHHCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHH
CESGSMSLAAQRLGVSQSAVSQLVKALEQTYGVQLLDRDVRPARPTRAGNILLEMAEGLL
HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCHHHHHHHHHHHHHH
SDARSIAERLRQSVRQDHAQIRLGCVDSFAATVGPSLIRALSGSARELQLWSGLTPGLNA
HHHHHHHHHHHHHHHHHHHHEEHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCH
QLLARDLDLAVCTEIPADPRLMQHLLFAEAWVAVFPRNVECPPLDEARDLKRRLPPLPLI
HHHHHHCCHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCHH
RYTQRSVIGQQIERFLRHLGLELPRRFAFDATDPLLSVVAAGLGWAISTPLCLWQSRAWL
HHHHHHHHHHHHHHHHHHHCHHHHHHHCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHH
DQVQVVPLPPSRLGQREFHLLCRDAQWAPTAAEIARLTRTALLQDVAPALRRVMPALATG
HCCEEEECCHHHHCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
ADPGPAPFHIPDHLPDPSLPP
CCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11743193; 11743194 [H]