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The map label for this gene is yncD [C]

Identifier: 119899268

GI number: 119899268

Start: 3269103

End: 3271517

Strand: Direct

Name: yncD [C]

Synonym: azo2978

Alternate gene names: 119899268

Gene position: 3269103-3271517 (Clockwise)

Preceding gene: 119899267

Following gene: 119899269

Centisome position: 74.7

GC content: 70.31

Gene sequence:

>2415_bases
ATGAAGACCCCCTCCCCCCGCCGCCTGCGCGCTGCCCCGCTCACGCCGATCGCCGCCGCGCTCGCCACGCTGTTCGCCCC
CGCCCCGCTCCTTGCGCAGGAACTTGCGCTCGGCGCCGTCGAAGTGGTCGCCGTCGCGCCGCTGCCCGGCCTTGACCTGC
CGCGCGAGCAGGTGCCGTCCAATGTGCAGACCGTCACCAGCGCCGCGCTGCGCGCCAAGCAGAGCGTGGCGCTGCCGGAC
TTCCTCGGCGACCGCCTGCCCGGCGTGAACATCAACGAAATCCAGGGCAACCCTTTCCAGCCGGATGTGAACTACCGCGG
CTTCGCCGCCTCGCCGCTGCTCGGCACGCCGCAGGGGCTGTCGGTGTATCTGGACGGCGTGCGGGTGAACGAGCCCTTCG
GCGACACGGTGAACTGGGACCTGATCCCGCAGATGGCGCTCGACACCGTCACCCTGCTGCCCGGCTCCAACCCGCTGTAC
GGCCTCAACACGCTGGGCGGCGCGCTCGCGCTGCGCACCAAGAACGGCTTCGACCACCCCGGCGGCGAAGCGCAGGTGCT
GTGGGGCTCGTTCCAGCGCCGCAGCCTGGAGGTGGAACACGGCGGCAGCCACGGCGACACCGGCTATTACGTGGCCGCCA
ACCTGTTCAAGGAAGAGGGCTGGCGCGACCGTTCGCCGTCCGAGGTGCGCCAGTTCTTCGGCAAGCTCACCCAGCGCATC
GACAGCGGCGAGATCGACCTGACGCTGCTGCGCGCCGACACCGACCTCACCGGCAACGGCCTCGCGCCGGAATCCATGCT
CGACCAGCGCCGCCGCGCGGTGTTCACCCACCCGGACAACACCCGCAACGACATGACCATGGTGGCGCTCTCGGGGCGCT
ACTGGCTGGACGACCGCAACACGCTGTCGGCGTCGATCTACCACCGCGAAACCCGCACCCGCACGCTCAACGGCGACGCC
AACGACGACTTCGAGGAAGGCCCCAACGACGGCGACTGCGACCCGGCCGACTTCGCCAGCGGCTCGCCCGAAGAGGCGCA
GTGCGCGGCGGCCAACGGCGCCGGCGGCTTCAACGCCGAGACCGGCGCCAACAACCGCACCCGCAACATCCAGCGCGCCC
GCGGCGTGGCCCTGCAGTGGAGCCACACCGCGGACACCCACCAGCTTGCGGTCGGCGTCAGCCACGACCGCAGCAAGAAC
CGCTTCAGCCAGACCAGCCAGCTCGGCCTGCTCGACGCCAGTCGCGGCGTGGTGCCCACCGACGACGTCGAACTGGAGAA
CAGCCTGGACGGCGAAACCCGCACCAGCAGCATCTACCTGACCGACACCTACGCGCTGACGCCCGCGCTGCACCTGACCG
CCTCGGCGCGCTACAACCACACCCGCGTCATCAACCACGACCGCCTCGACCCGACCCCGCCCAACCTCGACGGCGACTTC
ACCTACCGCAAGCTCAACCCGGCGCTCGGCCTCACCTGGCAGGCCAGCGAGCAGCTCACGGTGTATGGCGGCTACTCGCA
GGGCAACCGCGCGCCCTCGCCGATCGAACTCGGCTGCGCCGACCCGGAAAATCCCTGCACGCTGCCCAACGCGCTTGCCG
CCGACCCCTTCCTCAAGCAGGTGGTCACCCGCACGCTGGAACTCGGCGTGCGCGGCACCGTGCCCGGCCTGCTCGGCGAC
AGCCTGCGCTGGAACGCCGGCCTGTACCGCAGCGTGAACCACGACGACATCCTCTTCGTCGGCACCTCCACCAGCGCCGG
CTACTTCACCAACTTCGGCCGCACCCGCCGCCAGGGCGCCGAACTGGGCCTGGCCGGCAAGCACCGCGGGCTTGACTGGG
CGCTGAACTACAACTACGTCGATGCCAGCTTCCAGTCCTCGGCCTGCATCCTGGCGGAGAACAACAGCTCGCGCGGGCAG
TCGGCCGAGTGCACCGCCGACGGCCAGGACGACGAAATCCTGGTGAAGAAGGGCGACACGCTGCCCGGCATCCCGCGCCA
CAGCCTCAAGCTGATGCTGTCCTGGCAGGCCACCGAGGCGCTGCGCGTGGGCGCCGACTTCGTCGCCTTCTCCTCGCAGT
ACGCCCGCGGCAACGAGAACAACCGCCACCGCTCCGGCGACGCCACCGACGCCTTCGGCGAAACCCGCACGTTCGAGGGC
AGCGGCAAGATCGCCGGCTACGGTGTGCTCAACCTCAACGCCGACTACAAGCTGGGCGGGGGCTGGACACTCTTCGGCCG
CGTCAATAACGTGTTCGATCGCAAGTACGCCACCGGCGGCGCGCTCGCGGAAAACCCCTTCGATGCCGGCGGCGCCTTCC
AGACCAATTCGGGCGACTGGGCGCGCGAAACCTTCTACGCCCCCGGCGCCCCGCGCGCCGGCTGGATCGGCCTGCGTTAC
CGCTGGGGAGCCTGA

Upstream 100 bases:

>100_bases
ACCGAGTACCGCCGCAGCGTCACCCACCTTTTCCCGCGTGCCGAGCAGGCCGCGCTCGAAGCCCAGGGCCGGCGCTGACC
TGCCCCGCTGGAACACGACA

Downstream 100 bases:

>100_bases
CCGCCATGAAAGCCGCCGCCTCGTCTCCGTCCCCCCGCCGCGCCGCACTCAGCCTGCACGCGCGCGTCAGCCTGGTGCTG
TGCGCGCTGGTGGCCGCGCT

Product: putative TonB-dependent receptor

Products: NA

Alternate protein names: NB-Dependent Receptor YncD; NB-Dependent Siderophore Receptor; Nb-Dependent Receptor; OM Receptor nB; NB Domain-Containing Protein; NB-Dependent Receptor-Like Protein; NB-Dependent Receptor Plug; NB-Dependent Receptor Protein; Outer Membrane Receptor Protein; Ferrienterobactin-Like Protein; Outer Membrane Receptor nB Dependent; Iron Complex Outer Membrane Receptor Protein; Outer Membrane Receptor Protein Mostly Fe Transport; NB-Dependent Receptor Domain Protein

Number of amino acids: Translated: 804; Mature: 804

Protein sequence:

>804_residues
MKTPSPRRLRAAPLTPIAAALATLFAPAPLLAQELALGAVEVVAVAPLPGLDLPREQVPSNVQTVTSAALRAKQSVALPD
FLGDRLPGVNINEIQGNPFQPDVNYRGFAASPLLGTPQGLSVYLDGVRVNEPFGDTVNWDLIPQMALDTVTLLPGSNPLY
GLNTLGGALALRTKNGFDHPGGEAQVLWGSFQRRSLEVEHGGSHGDTGYYVAANLFKEEGWRDRSPSEVRQFFGKLTQRI
DSGEIDLTLLRADTDLTGNGLAPESMLDQRRRAVFTHPDNTRNDMTMVALSGRYWLDDRNTLSASIYHRETRTRTLNGDA
NDDFEEGPNDGDCDPADFASGSPEEAQCAAANGAGGFNAETGANNRTRNIQRARGVALQWSHTADTHQLAVGVSHDRSKN
RFSQTSQLGLLDASRGVVPTDDVELENSLDGETRTSSIYLTDTYALTPALHLTASARYNHTRVINHDRLDPTPPNLDGDF
TYRKLNPALGLTWQASEQLTVYGGYSQGNRAPSPIELGCADPENPCTLPNALAADPFLKQVVTRTLELGVRGTVPGLLGD
SLRWNAGLYRSVNHDDILFVGTSTSAGYFTNFGRTRRQGAELGLAGKHRGLDWALNYNYVDASFQSSACILAENNSSRGQ
SAECTADGQDDEILVKKGDTLPGIPRHSLKLMLSWQATEALRVGADFVAFSSQYARGNENNRHRSGDATDAFGETRTFEG
SGKIAGYGVLNLNADYKLGGGWTLFGRVNNVFDRKYATGGALAENPFDAGGAFQTNSGDWARETFYAPGAPRAGWIGLRY
RWGA

Sequences:

>Translated_804_residues
MKTPSPRRLRAAPLTPIAAALATLFAPAPLLAQELALGAVEVVAVAPLPGLDLPREQVPSNVQTVTSAALRAKQSVALPD
FLGDRLPGVNINEIQGNPFQPDVNYRGFAASPLLGTPQGLSVYLDGVRVNEPFGDTVNWDLIPQMALDTVTLLPGSNPLY
GLNTLGGALALRTKNGFDHPGGEAQVLWGSFQRRSLEVEHGGSHGDTGYYVAANLFKEEGWRDRSPSEVRQFFGKLTQRI
DSGEIDLTLLRADTDLTGNGLAPESMLDQRRRAVFTHPDNTRNDMTMVALSGRYWLDDRNTLSASIYHRETRTRTLNGDA
NDDFEEGPNDGDCDPADFASGSPEEAQCAAANGAGGFNAETGANNRTRNIQRARGVALQWSHTADTHQLAVGVSHDRSKN
RFSQTSQLGLLDASRGVVPTDDVELENSLDGETRTSSIYLTDTYALTPALHLTASARYNHTRVINHDRLDPTPPNLDGDF
TYRKLNPALGLTWQASEQLTVYGGYSQGNRAPSPIELGCADPENPCTLPNALAADPFLKQVVTRTLELGVRGTVPGLLGD
SLRWNAGLYRSVNHDDILFVGTSTSAGYFTNFGRTRRQGAELGLAGKHRGLDWALNYNYVDASFQSSACILAENNSSRGQ
SAECTADGQDDEILVKKGDTLPGIPRHSLKLMLSWQATEALRVGADFVAFSSQYARGNENNRHRSGDATDAFGETRTFEG
SGKIAGYGVLNLNADYKLGGGWTLFGRVNNVFDRKYATGGALAENPFDAGGAFQTNSGDWARETFYAPGAPRAGWIGLRY
RWGA
>Mature_804_residues
MKTPSPRRLRAAPLTPIAAALATLFAPAPLLAQELALGAVEVVAVAPLPGLDLPREQVPSNVQTVTSAALRAKQSVALPD
FLGDRLPGVNINEIQGNPFQPDVNYRGFAASPLLGTPQGLSVYLDGVRVNEPFGDTVNWDLIPQMALDTVTLLPGSNPLY
GLNTLGGALALRTKNGFDHPGGEAQVLWGSFQRRSLEVEHGGSHGDTGYYVAANLFKEEGWRDRSPSEVRQFFGKLTQRI
DSGEIDLTLLRADTDLTGNGLAPESMLDQRRRAVFTHPDNTRNDMTMVALSGRYWLDDRNTLSASIYHRETRTRTLNGDA
NDDFEEGPNDGDCDPADFASGSPEEAQCAAANGAGGFNAETGANNRTRNIQRARGVALQWSHTADTHQLAVGVSHDRSKN
RFSQTSQLGLLDASRGVVPTDDVELENSLDGETRTSSIYLTDTYALTPALHLTASARYNHTRVINHDRLDPTPPNLDGDF
TYRKLNPALGLTWQASEQLTVYGGYSQGNRAPSPIELGCADPENPCTLPNALAADPFLKQVVTRTLELGVRGTVPGLLGD
SLRWNAGLYRSVNHDDILFVGTSTSAGYFTNFGRTRRQGAELGLAGKHRGLDWALNYNYVDASFQSSACILAENNSSRGQ
SAECTADGQDDEILVKKGDTLPGIPRHSLKLMLSWQATEALRVGADFVAFSSQYARGNENNRHRSGDATDAFGETRTFEG
SGKIAGYGVLNLNADYKLGGGWTLFGRVNNVFDRKYATGGALAENPFDAGGAFQTNSGDWARETFYAPGAPRAGWIGLRY
RWGA

Specific function: Probable Receptor, Tonb-Dependent. [C]

COG id: COG1629

COG function: function code P; Outer membrane receptor proteins, mostly Fe transport

Gene ontology:

Cell location: Outer Membrane [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787723, Length=770, Percent_Identity=24.2857142857143, Blast_Score=98, Evalue=2e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 86890; Mature: 86890

Theoretical pI: Translated: 5.34; Mature: 5.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTPSPRRLRAAPLTPIAAALATLFAPAPLLAQELALGAVEVVAVAPLPGLDLPREQVPS
CCCCCCCCEECCCCCHHHHHHHHHHCCCHHHHHHHHHCEEEEEEECCCCCCCCCHHHCCC
NVQTVTSAALRAKQSVALPDFLGDRLPGVNINEIQGNPFQPDVNYRGFAASPLLGTPQGL
HHHHHHHHHHHHHHCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCCCEECCCCCCCCCCC
SVYLDGVRVNEPFGDTVNWDLIPQMALDTVTLLPGSNPLYGLNTLGGALALRTKNGFDHP
EEEEECEEECCCCCCCCCCCCCCHHHHCEEEECCCCCCCEEHHCCCCEEEEEECCCCCCC
GGEAQVLWGSFQRRSLEVEHGGSHGDTGYYVAANLFKEEGWRDRSPSEVRQFFGKLTQRI
CCCEEEEEECCCCCEEEEECCCCCCCCCEEEEEEHHHHCCCCCCCHHHHHHHHHHHHHHC
DSGEIDLTLLRADTDLTGNGLAPESMLDQRRRAVFTHPDNTRNDMTMVALSGRYWLDDRN
CCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHEEEECCCCCCCCEEEEEECCEEEECCCC
TLSASIYHRETRTRTLNGDANDDFEEGPNDGDCDPADFASGSPEEAQCAAANGAGGFNAE
CEEEEEEECCCCCEEECCCCCCCHHCCCCCCCCCHHHCCCCCCCCCEEEECCCCCCCCCC
TGANNRTRNIQRARGVALQWSHTADTHQLAVGVSHDRSKNRFSQTSQLGLLDASRGVVPT
CCCCCCHHHHHHHCCEEEEECCCCCCEEEEEECCCCCCHHHHHHHHHCEEEECCCCCCCC
DDVELENSLDGETRTSSIYLTDTYALTPALHLTASARYNHTRVINHDRLDPTPPNLDGDF
CCCCCCCCCCCCCCCCEEEEEECCEECCEEEEEEECCCCCEEEEECCCCCCCCCCCCCCE
TYRKLNPALGLTWQASEQLTVYGGYSQGNRAPSPIELGCADPENPCTLPNALAADPFLKQ
EEEEECCCCCEEEECCCCEEEEECCCCCCCCCCCEEECCCCCCCCCCCCCHHHCCHHHHH
VVTRTLELGVRGTVPGLLGDSLRWNAGLYRSVNHDDILFVGTSTSAGYFTNFGRTRRQGA
HHHHHHHCCCCCCCCCHHCCCCCCCCCEEECCCCCCEEEEECCCCCCHHHCCCHHHHCCC
ELGLAGKHRGLDWALNYNYVDASFQSSACILAENNSSRGQSAECTADGQDDEILVKKGDT
CCCCCCCCCCCEEEEECCEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEECCCC
LPGIPRHSLKLMLSWQATEALRVGADFVAFSSQYARGNENNRHRSGDATDAFGETRTFEG
CCCCCCCCEEEEEEECCHHHHHHCCHHHHHCHHHHCCCCCCCCCCCCCCCCCCCCEEECC
SGKIAGYGVLNLNADYKLGGGWTLFGRVNNVFDRKYATGGALAENPFDAGGAFQTNSGDW
CCCEEEEEEEEECCCEEECCCEEEEECHHHHHHHHHCCCCCCCCCCCCCCCCEECCCCCC
ARETFYAPGAPRAGWIGLRYRWGA
HHHEEECCCCCCCCEEEEEEECCC
>Mature Secondary Structure
MKTPSPRRLRAAPLTPIAAALATLFAPAPLLAQELALGAVEVVAVAPLPGLDLPREQVPS
CCCCCCCCEECCCCCHHHHHHHHHHCCCHHHHHHHHHCEEEEEEECCCCCCCCCHHHCCC
NVQTVTSAALRAKQSVALPDFLGDRLPGVNINEIQGNPFQPDVNYRGFAASPLLGTPQGL
HHHHHHHHHHHHHHCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCCCEECCCCCCCCCCC
SVYLDGVRVNEPFGDTVNWDLIPQMALDTVTLLPGSNPLYGLNTLGGALALRTKNGFDHP
EEEEECEEECCCCCCCCCCCCCCHHHHCEEEECCCCCCCEEHHCCCCEEEEEECCCCCCC
GGEAQVLWGSFQRRSLEVEHGGSHGDTGYYVAANLFKEEGWRDRSPSEVRQFFGKLTQRI
CCCEEEEEECCCCCEEEEECCCCCCCCCEEEEEEHHHHCCCCCCCHHHHHHHHHHHHHHC
DSGEIDLTLLRADTDLTGNGLAPESMLDQRRRAVFTHPDNTRNDMTMVALSGRYWLDDRN
CCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHEEEECCCCCCCCEEEEEECCEEEECCCC
TLSASIYHRETRTRTLNGDANDDFEEGPNDGDCDPADFASGSPEEAQCAAANGAGGFNAE
CEEEEEEECCCCCEEECCCCCCCHHCCCCCCCCCHHHCCCCCCCCCEEEECCCCCCCCCC
TGANNRTRNIQRARGVALQWSHTADTHQLAVGVSHDRSKNRFSQTSQLGLLDASRGVVPT
CCCCCCHHHHHHHCCEEEEECCCCCCEEEEEECCCCCCHHHHHHHHHCEEEECCCCCCCC
DDVELENSLDGETRTSSIYLTDTYALTPALHLTASARYNHTRVINHDRLDPTPPNLDGDF
CCCCCCCCCCCCCCCCEEEEEECCEECCEEEEEEECCCCCEEEEECCCCCCCCCCCCCCE
TYRKLNPALGLTWQASEQLTVYGGYSQGNRAPSPIELGCADPENPCTLPNALAADPFLKQ
EEEEECCCCCEEEECCCCEEEEECCCCCCCCCCCEEECCCCCCCCCCCCCHHHCCHHHHH
VVTRTLELGVRGTVPGLLGDSLRWNAGLYRSVNHDDILFVGTSTSAGYFTNFGRTRRQGA
HHHHHHHCCCCCCCCCHHCCCCCCCCCEEECCCCCCEEEEECCCCCCHHHCCCHHHHCCC
ELGLAGKHRGLDWALNYNYVDASFQSSACILAENNSSRGQSAECTADGQDDEILVKKGDT
CCCCCCCCCCCEEEEECCEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEECCCC
LPGIPRHSLKLMLSWQATEALRVGADFVAFSSQYARGNENNRHRSGDATDAFGETRTFEG
CCCCCCCCEEEEEEECCHHHHHHCCHHHHHCHHHHCCCCCCCCCCCCCCCCCCCCEEECC
SGKIAGYGVLNLNADYKLGGGWTLFGRVNNVFDRKYATGGALAENPFDAGGAFQTNSGDW
CCCEEEEEEEEECCCEEECCCEEEEECHHHHHHHHHCCCCCCCCCCCCCCCCEECCCCCC
ARETFYAPGAPRAGWIGLRYRWGA
HHHEEECCCCCCCCEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA